Wall clock time and date at job start Wed Apr 1 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 N 1.46500 * 109.45713 * 304.45700 * 3 2 1 5 5 C 1.36937 * 120.00341 * 297.25282 * 4 3 2 6 6 H 1.08003 * 119.99335 * 354.17021 * 5 4 3 7 7 C 1.38805 * 120.00256 * 174.17108 * 5 4 3 8 8 N 1.31621 * 119.99871 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99911 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47394 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47168 * 120.00169 * 9 7 5 12 12 H 1.48500 * 109.46833 * 239.99721 * 9 7 5 13 13 C 1.53041 * 109.46043 * 184.48873 * 3 2 1 14 14 C 1.53199 * 109.31261 * 178.60252 * 13 3 2 15 15 N 1.46918 * 108.76764 * 54.64832 * 14 13 3 16 16 C 1.34781 * 120.63141 * 126.40837 * 15 14 13 17 17 O 1.21561 * 120.00435 * 187.80167 * 16 15 14 18 18 C 1.47820 * 119.99804 * 7.79712 * 16 15 14 19 19 C 1.39452 * 120.00687 * 189.46322 * 18 16 15 20 20 N 1.32017 * 119.98077 * 179.75615 * 19 18 16 21 21 C 1.32793 * 119.99409 * 0.51987 * 20 19 18 22 22 N 1.38399 * 119.99550 * 179.70826 * 21 20 19 23 23 C 1.46507 * 119.99953 * 185.02235 * 22 21 20 24 24 C 1.46502 * 120.00357 * 5.02451 * 22 21 20 25 25 C 1.39845 * 120.00397 * 359.73270 * 21 20 19 26 26 N 1.31484 * 120.02043 * 0.02562 * 25 21 20 27 27 C 1.46925 * 118.74478 * 306.38906 * 15 14 13 28 28 C 1.53036 * 109.46306 * 64.43191 * 3 2 1 29 29 H 1.08994 * 109.47362 * 298.94564 * 1 2 3 30 30 H 1.09003 * 109.46667 * 58.94062 * 1 2 3 31 31 H 1.08995 * 109.47609 * 178.93431 * 1 2 3 32 32 H 1.08995 * 109.47316 * 239.99559 * 2 1 3 33 33 H 1.09000 * 109.46923 * 119.99367 * 2 1 3 34 34 H 0.97000 * 119.99992 * 117.26043 * 4 3 2 35 35 H 0.97004 * 119.99663 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.49635 * 298.55865 * 13 3 2 37 37 H 1.08995 * 109.50008 * 58.66026 * 13 3 2 38 38 H 1.09008 * 109.59031 * 294.86159 * 14 13 3 39 39 H 1.09001 * 109.58565 * 174.43655 * 14 13 3 40 40 H 1.07997 * 120.00231 * 0.02562 * 19 18 16 41 41 H 1.08994 * 109.47259 * 90.00040 * 23 22 21 42 42 H 1.08996 * 109.47409 * 210.00456 * 23 22 21 43 43 H 1.09007 * 109.46900 * 330.00017 * 23 22 21 44 44 H 1.09003 * 109.46975 * 89.99710 * 24 22 21 45 45 H 1.09001 * 109.47246 * 209.99508 * 24 22 21 46 46 H 1.08993 * 109.47011 * 329.99909 * 24 22 21 47 47 H 1.07997 * 119.99134 * 180.02562 * 25 21 20 48 48 H 1.08999 * 109.58415 * 293.82558 * 27 15 14 49 49 H 1.08989 * 109.59275 * 173.39396 * 27 15 14 50 50 H 1.09005 * 109.49747 * 301.33584 * 28 3 2 51 51 H 1.08993 * 109.49895 * 61.43100 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4659 2.1631 -1.1390 5 6 1.7499 1.7615 -2.4170 6 1 2.4698 0.9749 -2.5883 7 6 1.1126 2.3654 -3.4921 8 7 0.2356 3.3244 -3.2832 9 14 1.4995 1.8170 -5.2354 10 1 2.5122 0.7316 -5.1996 11 1 0.2604 1.3176 -5.8838 12 1 2.0340 2.9666 -6.0087 13 6 3.5663 1.4436 -0.1129 14 6 4.0707 2.8897 -0.1478 15 7 3.5524 3.5996 1.0295 16 6 4.3885 4.2525 1.8609 17 8 3.9698 4.7148 2.9043 18 6 5.8147 4.4064 1.5039 19 6 6.7188 4.9029 2.4424 20 7 7.9933 5.0355 2.1246 21 6 8.4120 4.7059 0.9083 22 7 9.7470 4.8507 0.5732 23 6 10.1899 4.5922 -0.7992 24 6 10.7172 5.2623 1.5908 25 6 7.5039 4.2130 -0.0342 26 7 6.2354 4.0763 0.2834 27 6 2.1053 3.5847 1.2831 28 6 1.6229 2.1308 1.3016 29 1 -0.3634 0.4973 0.8992 30 1 -0.3633 0.5302 -0.8804 31 1 -0.3634 -1.0274 -0.0191 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.8846 2.9248 -0.9879 35 1 -0.2095 3.7467 -4.0345 36 1 3.9951 0.9292 0.7472 37 1 3.8637 0.9325 -1.0285 38 1 3.7158 3.3788 -1.0550 39 1 5.1605 2.8971 -0.1286 40 1 6.3772 5.1746 3.4302 41 1 10.1329 5.5134 -1.3789 42 1 11.2191 4.2335 -0.7873 43 1 9.5473 3.8373 -1.2523 44 1 11.1247 4.3789 2.0826 45 1 11.5254 5.8200 1.1177 46 1 10.2234 5.8939 2.3292 47 1 7.8448 3.9446 -1.0232 48 1 1.5902 4.1305 0.4926 49 1 1.8982 4.0507 2.2464 50 1 0.5369 2.1090 1.3929 51 1 2.0701 1.6099 2.1481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755069535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:47 Heat of formation + Delta-G solvation = 63.046569 kcal Electronic energy + Delta-G solvation = -31939.420375 eV Core-core repulsion = 27875.600250 eV Total energy + Delta-G solvation = -4063.820124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.42408 -39.65841 -37.95539 -37.14557 -34.94434 -34.05700 -32.53002 -31.32246 -30.44547 -29.95444 -28.92834 -28.84668 -26.58061 -24.80531 -24.45425 -23.67901 -23.13193 -22.30647 -21.30508 -19.95778 -18.36378 -17.96150 -17.67152 -16.97604 -16.69034 -16.03293 -15.74660 -15.21976 -15.08994 -14.78783 -14.63893 -14.29239 -14.07192 -13.83725 -13.74456 -13.54792 -13.21595 -13.06940 -12.94996 -12.76904 -12.65751 -12.48527 -12.36834 -12.19172 -11.58605 -11.43962 -11.16026 -11.06557 -11.01264 -10.84923 -10.58548 -10.51798 -10.31345 -10.19649 -10.15055 -9.97473 -9.87150 -9.59250 -9.34396 -8.90092 -8.59474 -8.18271 -7.91321 -6.86442 -5.71928 -2.99275 0.57027 0.99998 2.38605 2.91954 3.35034 3.44171 3.50190 3.52407 3.80636 4.06617 4.09753 4.21866 4.62491 4.66988 4.77106 4.86084 4.89260 5.06938 5.18726 5.20524 5.36277 5.42846 5.45689 5.48837 5.50146 5.68365 5.75470 5.82190 5.93167 6.01423 6.09164 6.20790 6.23238 6.27517 6.30831 6.32909 6.49342 6.60012 6.69309 6.71058 6.75127 6.79147 6.92287 7.04911 7.08424 7.20535 7.24505 7.28327 7.63348 7.77810 7.90117 8.45693 8.47011 9.58386 10.16391 10.52375 11.50721 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.003269 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.253994 B = 8564.081437 C =10076.108910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 C 0.201 3.799 4 N -0.712 5.712 5 C -0.223 4.223 6 H 0.069 0.931 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.898 3.102 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.294 1.294 13 C -0.135 4.135 14 C 0.088 3.912 15 N -0.576 5.576 16 C 0.576 3.424 17 O -0.556 6.556 18 C -0.040 4.040 19 C 0.168 3.832 20 N -0.509 5.509 21 C 0.368 3.632 22 N -0.602 5.602 23 C 0.087 3.913 24 C 0.093 3.907 25 C -0.013 4.013 26 N -0.355 5.355 27 C 0.114 3.886 28 C -0.129 4.129 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.031 0.969 32 H 0.058 0.942 33 H 0.038 0.962 34 H 0.383 0.617 35 H 0.252 0.748 36 H 0.042 0.958 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.181 0.819 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.052 0.948 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.172 0.828 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.008 1.103 8.862 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.110 3.890 4 N -0.353 5.353 5 C -0.355 4.355 6 H 0.087 0.913 7 C -0.209 4.209 8 N -0.581 5.581 9 Si 0.730 3.270 10 H -0.207 1.207 11 H -0.222 1.222 12 H -0.222 1.222 13 C -0.175 4.175 14 C -0.034 4.034 15 N -0.306 5.306 16 C 0.362 3.638 17 O -0.435 6.435 18 C -0.180 4.180 19 C 0.006 3.994 20 N -0.232 5.232 21 C 0.129 3.871 22 N -0.314 5.314 23 C -0.056 4.056 24 C -0.050 4.050 25 C -0.184 4.184 26 N -0.071 5.071 27 C -0.008 4.008 28 C -0.168 4.168 29 H 0.058 0.942 30 H 0.095 0.905 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.218 0.782 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.141 0.859 40 H 0.198 0.802 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.101 0.899 47 H 0.189 0.811 48 H 0.096 0.904 49 H 0.100 0.900 50 H 0.094 0.906 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.983 1.286 9.215 21.140 hybrid contribution 0.003 -0.192 -1.261 1.276 sum 18.986 1.094 7.954 20.614 Atomic orbital electron populations 1.21657 0.96151 0.99541 1.02434 1.21904 0.96358 0.98251 0.99727 1.19563 0.91136 0.90937 0.87411 1.42446 1.57476 1.35112 1.00291 1.19127 1.17810 1.15388 0.83151 0.91293 1.24673 0.99319 0.99414 0.97454 1.69665 1.30877 1.27814 1.29722 0.86246 0.77250 0.77620 0.85861 1.20712 1.22171 1.22177 1.22324 0.98203 0.96334 1.00666 1.22803 1.01724 0.91601 0.87230 1.47961 1.07016 1.49542 1.26058 1.17509 0.83864 0.79034 0.83392 1.90738 1.76840 1.51701 1.24257 1.21815 0.96611 1.07478 0.92053 1.23449 0.86481 0.89336 1.00125 1.68087 1.16830 1.21080 1.17154 1.19598 0.86482 0.90136 0.90902 1.46193 1.03452 1.70936 1.10826 1.21880 1.01045 1.01760 0.80868 1.21689 0.91537 1.00168 0.91594 1.23449 0.89330 1.04509 1.01112 1.68441 1.14256 1.07736 1.16689 1.21643 0.79400 0.97570 1.02183 1.22104 1.01281 0.95263 0.98106 0.94150 0.90476 0.94986 0.92326 0.94368 0.78246 0.93776 0.93897 0.90959 0.89712 0.85898 0.80249 0.92115 0.90402 0.90402 0.92930 0.91377 0.89934 0.81143 0.90409 0.89969 0.90600 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.44 37.16 0.35 -2.18 16 2 C -0.12 -2.21 4.78 -26.73 -0.13 -2.34 16 3 C 0.20 3.76 0.43 -131.78 -0.06 3.70 16 4 N -0.71 -16.09 3.12 -47.20 -0.15 -16.24 16 5 C -0.22 -5.66 8.69 -15.06 -0.13 -5.79 16 6 H 0.07 1.73 6.75 -52.48 -0.35 1.38 16 7 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 8 N -0.93 -26.99 13.07 55.49 0.73 -26.27 16 9 Si 0.90 21.75 29.55 -169.99 -5.02 16.72 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 C -0.13 -2.40 4.66 -26.61 -0.12 -2.52 16 14 C 0.09 1.57 5.62 -3.71 -0.02 1.55 16 15 N -0.58 -10.22 2.97 -173.89 -0.52 -10.73 16 16 C 0.58 10.08 7.64 -12.34 -0.09 9.99 16 17 O -0.56 -10.62 15.80 5.31 0.08 -10.54 16 18 C -0.04 -0.60 6.56 -82.88 -0.54 -1.14 16 19 C 0.17 2.23 10.76 -17.02 -0.18 2.05 16 20 N -0.51 -6.32 9.22 -11.96 -0.11 -6.43 16 21 C 0.37 4.09 7.37 -155.00 -1.14 2.95 16 22 N -0.60 -4.88 3.37 -189.51 -0.64 -5.51 16 23 C 0.09 0.43 10.28 59.85 0.62 1.04 16 24 C 0.09 0.60 10.50 59.85 0.63 1.23 16 25 C -0.01 -0.15 10.42 -17.10 -0.18 -0.33 16 26 N -0.36 -5.12 6.29 -9.44 -0.06 -5.18 16 27 C 0.11 2.02 6.17 -3.71 -0.02 2.00 16 28 C -0.13 -2.19 4.72 -26.61 -0.13 -2.32 16 29 H 0.04 0.67 6.57 -51.93 -0.34 0.33 16 30 H 0.08 1.66 7.43 -51.93 -0.39 1.27 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 1.13 7.71 -51.93 -0.40 0.73 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.38 9.47 6.57 -40.82 -0.27 9.21 16 35 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 37 H 0.07 1.35 7.07 -51.93 -0.37 0.98 16 38 H 0.08 1.78 7.69 -51.92 -0.40 1.38 16 39 H 0.12 2.04 4.03 -82.96 -0.33 1.71 16 40 H 0.18 2.16 7.66 -52.49 -0.40 1.75 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 43 H 0.08 0.34 5.98 -51.93 -0.31 0.03 16 44 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.07 0.29 8.07 -51.93 -0.42 -0.13 16 46 H 0.08 0.64 7.30 -51.93 -0.38 0.26 16 47 H 0.17 1.46 6.02 -52.49 -0.32 1.14 16 48 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 49 H 0.08 1.42 7.00 -51.94 -0.36 1.05 16 50 H 0.08 1.26 6.51 -51.93 -0.34 0.92 16 51 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -31.21 392.86 -8.85 -40.06 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.83 Total: 10.76 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -1.25 Total: 7.43 kcal Atomic # 7 Polarization: -69.61 SS G_CDS: -0.75 Total: -70.36 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.21 -8.85 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755069535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.109 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds