Wall clock time and date at job start Wed Apr 1 2020 06:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 N 1.46500 * 109.45713 * 304.45700 * 3 2 1 5 5 C 1.36937 * 120.00341 * 297.25282 * 4 3 2 6 6 H 1.08003 * 119.99335 * 354.17021 * 5 4 3 7 7 C 1.38805 * 120.00256 * 174.17108 * 5 4 3 8 8 N 1.31621 * 119.99871 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99911 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47394 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.47168 * 120.00169 * 9 7 5 12 12 H 1.48500 * 109.46833 * 239.99721 * 9 7 5 13 13 C 1.53041 * 109.46043 * 184.48873 * 3 2 1 14 14 C 1.53199 * 109.31261 * 178.60252 * 13 3 2 15 15 N 1.46918 * 108.76764 * 54.64832 * 14 13 3 16 16 C 1.34781 * 120.63141 * 126.40837 * 15 14 13 17 17 O 1.21561 * 120.00435 * 187.80167 * 16 15 14 18 18 C 1.47820 * 119.99804 * 7.79712 * 16 15 14 19 19 C 1.39452 * 120.00687 * 189.46322 * 18 16 15 20 20 N 1.32017 * 119.98077 * 179.75615 * 19 18 16 21 21 C 1.32793 * 119.99409 * 0.51987 * 20 19 18 22 22 N 1.38399 * 119.99550 * 179.70826 * 21 20 19 23 23 C 1.46507 * 119.99953 * 185.02235 * 22 21 20 24 24 C 1.46502 * 120.00357 * 5.02451 * 22 21 20 25 25 C 1.39845 * 120.00397 * 359.73270 * 21 20 19 26 26 N 1.31484 * 120.02043 * 0.02562 * 25 21 20 27 27 C 1.46925 * 118.74478 * 306.38906 * 15 14 13 28 28 C 1.53036 * 109.46306 * 64.43191 * 3 2 1 29 29 H 1.08994 * 109.47362 * 298.94564 * 1 2 3 30 30 H 1.09003 * 109.46667 * 58.94062 * 1 2 3 31 31 H 1.08995 * 109.47609 * 178.93431 * 1 2 3 32 32 H 1.08995 * 109.47316 * 239.99559 * 2 1 3 33 33 H 1.09000 * 109.46923 * 119.99367 * 2 1 3 34 34 H 0.97000 * 119.99992 * 117.26043 * 4 3 2 35 35 H 0.97004 * 119.99663 * 179.97438 * 8 7 5 36 36 H 1.09007 * 109.49635 * 298.55865 * 13 3 2 37 37 H 1.08995 * 109.50008 * 58.66026 * 13 3 2 38 38 H 1.09008 * 109.59031 * 294.86159 * 14 13 3 39 39 H 1.09001 * 109.58565 * 174.43655 * 14 13 3 40 40 H 1.07997 * 120.00231 * 0.02562 * 19 18 16 41 41 H 1.08994 * 109.47259 * 90.00040 * 23 22 21 42 42 H 1.08996 * 109.47409 * 210.00456 * 23 22 21 43 43 H 1.09007 * 109.46900 * 330.00017 * 23 22 21 44 44 H 1.09003 * 109.46975 * 89.99710 * 24 22 21 45 45 H 1.09001 * 109.47246 * 209.99508 * 24 22 21 46 46 H 1.08993 * 109.47011 * 329.99909 * 24 22 21 47 47 H 1.07997 * 119.99134 * 180.02562 * 25 21 20 48 48 H 1.08999 * 109.58415 * 293.82558 * 27 15 14 49 49 H 1.08989 * 109.59275 * 173.39396 * 27 15 14 50 50 H 1.09005 * 109.49747 * 301.33584 * 28 3 2 51 51 H 1.08993 * 109.49895 * 61.43100 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4659 2.1631 -1.1390 5 6 1.7499 1.7615 -2.4170 6 1 2.4698 0.9749 -2.5883 7 6 1.1126 2.3654 -3.4921 8 7 0.2356 3.3244 -3.2832 9 14 1.4995 1.8170 -5.2354 10 1 2.5122 0.7316 -5.1996 11 1 0.2604 1.3176 -5.8838 12 1 2.0340 2.9666 -6.0087 13 6 3.5663 1.4436 -0.1129 14 6 4.0707 2.8897 -0.1478 15 7 3.5524 3.5996 1.0295 16 6 4.3885 4.2525 1.8609 17 8 3.9698 4.7148 2.9043 18 6 5.8147 4.4064 1.5039 19 6 6.7188 4.9029 2.4424 20 7 7.9933 5.0355 2.1246 21 6 8.4120 4.7059 0.9083 22 7 9.7470 4.8507 0.5732 23 6 10.1899 4.5922 -0.7992 24 6 10.7172 5.2623 1.5908 25 6 7.5039 4.2130 -0.0342 26 7 6.2354 4.0763 0.2834 27 6 2.1053 3.5847 1.2831 28 6 1.6229 2.1308 1.3016 29 1 -0.3634 0.4973 0.8992 30 1 -0.3633 0.5302 -0.8804 31 1 -0.3634 -1.0274 -0.0191 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 0.8846 2.9248 -0.9879 35 1 -0.2095 3.7467 -4.0345 36 1 3.9951 0.9292 0.7472 37 1 3.8637 0.9325 -1.0285 38 1 3.7158 3.3788 -1.0550 39 1 5.1605 2.8971 -0.1286 40 1 6.3772 5.1746 3.4302 41 1 10.1329 5.5134 -1.3789 42 1 11.2191 4.2335 -0.7873 43 1 9.5473 3.8373 -1.2523 44 1 11.1247 4.3789 2.0826 45 1 11.5254 5.8200 1.1177 46 1 10.2234 5.8939 2.3292 47 1 7.8448 3.9446 -1.0232 48 1 1.5902 4.1305 0.4926 49 1 1.8982 4.0507 2.2464 50 1 0.5369 2.1090 1.3929 51 1 2.0701 1.6099 2.1481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755069535.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:12:46 Heat of formation + Delta-G solvation = 44.378281 kcal Electronic energy + Delta-G solvation = -31940.229892 eV Core-core repulsion = 27875.600250 eV Total energy + Delta-G solvation = -4064.629642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.42739 -40.98422 -39.35986 -37.96863 -36.31778 -35.17779 -34.37449 -32.44503 -31.89758 -31.33882 -30.64637 -29.36344 -27.53119 -26.22316 -25.59919 -25.31201 -24.34087 -23.45838 -22.60312 -21.28307 -19.80193 -19.03244 -18.89734 -18.49742 -17.92772 -17.12064 -16.84728 -16.49194 -16.16526 -16.07938 -15.67183 -15.55267 -15.46217 -15.25266 -15.13303 -14.91905 -14.59350 -14.25421 -14.21022 -13.85525 -13.80867 -13.42075 -13.20325 -13.06220 -12.89014 -12.84869 -12.80240 -12.56648 -12.43380 -12.30054 -12.24253 -12.08469 -11.94766 -11.67661 -11.42163 -11.35033 -11.22644 -11.12469 -10.89431 -10.73517 -9.79740 -9.56043 -8.80853 -8.74834 -7.79431 -5.03798 -0.43494 0.04677 1.50224 1.51935 1.59812 1.69795 1.71417 2.06798 2.65483 2.74936 3.05145 3.21958 3.36292 3.55110 3.67750 3.89416 3.99355 4.04650 4.13419 4.23506 4.23999 4.33623 4.39355 4.49493 4.55033 4.57213 4.62578 4.73417 4.75677 4.77045 4.81474 4.88342 4.89831 4.93477 5.02262 5.07109 5.17822 5.21901 5.27249 5.32379 5.43987 5.56499 5.60686 5.65143 5.67851 5.74728 5.81364 5.96810 6.30576 6.42832 6.49317 6.74404 7.11691 7.49909 8.26694 8.50981 9.44617 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.003269 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.253994 B = 8564.081437 C =10076.108910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.119 4.119 3 C 0.194 3.806 4 N -0.715 5.715 5 C -0.197 4.197 6 H 0.074 0.926 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.304 1.304 12 H -0.302 1.302 13 C -0.129 4.129 14 C 0.099 3.901 15 N -0.582 5.582 16 C 0.575 3.425 17 O -0.579 6.579 18 C -0.072 4.072 19 C 0.176 3.824 20 N -0.521 5.521 21 C 0.371 3.629 22 N -0.591 5.591 23 C 0.076 3.924 24 C 0.087 3.913 25 C -0.006 4.006 26 N -0.378 5.378 27 C 0.117 3.883 28 C -0.119 4.119 29 H 0.053 0.947 30 H 0.036 0.964 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.370 0.630 35 H 0.243 0.757 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.142 0.858 40 H 0.186 0.814 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.201 0.799 48 H 0.053 0.947 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.304 -0.155 9.346 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.104 3.896 4 N -0.354 5.354 5 C -0.330 4.330 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.623 5.623 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.232 1.232 12 H -0.230 1.230 13 C -0.169 4.169 14 C -0.023 4.023 15 N -0.311 5.311 16 C 0.363 3.637 17 O -0.460 6.460 18 C -0.210 4.210 19 C 0.015 3.985 20 N -0.244 5.244 21 C 0.129 3.871 22 N -0.301 5.301 23 C -0.065 4.065 24 C -0.055 4.055 25 C -0.180 4.180 26 N -0.093 5.093 27 C -0.005 4.005 28 C -0.158 4.158 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.203 0.797 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.158 0.842 40 H 0.202 0.798 41 H 0.089 0.911 42 H 0.121 0.879 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.217 0.783 48 H 0.071 0.929 49 H 0.104 0.896 50 H 0.097 0.903 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 22.345 -0.011 9.724 24.369 hybrid contribution -0.733 0.236 -1.372 1.573 sum 21.612 0.225 8.352 23.171 Atomic orbital electron populations 1.21566 0.96201 1.00245 1.01140 1.21854 0.96228 0.97335 1.00395 1.19831 0.91659 0.91308 0.86786 1.42553 1.57167 1.34988 1.00729 1.19384 1.15828 1.13616 0.84157 0.90814 1.25290 1.00435 1.00490 1.00605 1.69815 1.32908 1.29784 1.29828 0.85345 0.76781 0.77200 0.82188 1.18994 1.23235 1.23045 1.22256 0.97225 0.96372 1.01073 1.22675 1.02790 0.91083 0.85717 1.47979 1.06928 1.50017 1.26187 1.17867 0.84901 0.78053 0.82869 1.90705 1.77652 1.52446 1.25195 1.21409 0.95471 1.10975 0.93166 1.23469 0.86640 0.88452 0.99968 1.68168 1.16169 1.22076 1.17985 1.19869 0.87839 0.89023 0.90373 1.46635 1.02415 1.68608 1.12467 1.22206 1.02604 1.02645 0.79048 1.21860 0.91606 1.00650 0.91377 1.23902 0.88296 1.03509 1.02292 1.68159 1.15857 1.08795 1.16504 1.21525 0.79729 0.97947 1.01337 1.22026 1.01568 0.94557 0.97604 0.92800 0.94488 0.93175 0.93756 0.91476 0.79735 0.94803 0.91866 0.91800 0.93563 0.84166 0.79755 0.91106 0.87876 0.89696 0.92103 0.88553 0.91400 0.78267 0.92885 0.89646 0.90302 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.69 9.44 71.98 0.68 -4.01 16 2 C -0.12 -4.07 4.78 30.59 0.15 -3.92 16 3 C 0.19 7.13 0.43 3.63 0.00 7.13 16 4 N -0.71 -32.96 3.12 -303.23 -0.94 -33.91 16 5 C -0.20 -10.13 8.69 84.03 0.73 -9.40 16 6 H 0.07 3.68 6.75 -2.91 -0.02 3.66 16 7 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 8 N -0.97 -58.37 13.07 21.65 0.28 -58.09 16 9 Si 0.95 45.56 29.55 68.60 2.03 47.59 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 12 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 13 C -0.13 -4.46 4.66 30.67 0.14 -4.31 16 14 C 0.10 3.55 5.62 86.37 0.49 4.03 16 15 N -0.58 -20.87 2.97 -822.33 -2.44 -23.31 16 16 C 0.57 20.36 7.64 86.78 0.66 21.02 16 17 O -0.58 -22.43 15.80 -3.91 -0.06 -22.49 16 18 C -0.07 -2.18 6.56 41.76 0.27 -1.90 16 19 C 0.18 4.60 10.76 84.96 0.91 5.52 16 20 N -0.52 -12.23 9.22 -191.75 -1.77 -13.99 16 21 C 0.37 7.40 7.37 133.32 0.98 8.39 16 22 N -0.59 -7.61 3.37 -753.49 -2.54 -10.16 16 23 C 0.08 0.43 10.28 127.77 1.31 1.75 16 24 C 0.09 0.85 10.50 127.77 1.34 2.19 16 25 C -0.01 -0.13 10.42 85.13 0.89 0.75 16 26 N -0.38 -10.57 6.29 -183.79 -1.16 -11.72 16 27 C 0.12 4.22 6.17 86.36 0.53 4.76 16 28 C -0.12 -3.95 4.72 30.67 0.14 -3.80 16 29 H 0.05 1.71 6.57 -2.39 -0.02 1.69 16 30 H 0.04 1.58 7.43 -2.39 -0.02 1.57 16 31 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.64 7.71 -2.39 -0.02 1.62 16 33 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.37 19.05 6.57 -92.71 -0.61 18.44 16 35 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 36 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 37 H 0.06 2.31 7.07 -2.39 -0.02 2.29 16 38 H 0.05 2.00 7.69 -2.38 -0.02 1.98 16 39 H 0.14 4.59 4.03 -63.65 -0.26 4.33 16 40 H 0.19 4.44 7.66 -2.91 -0.02 4.42 16 41 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.10 0.14 8.07 -2.39 -0.02 0.12 16 43 H 0.08 0.40 5.98 -2.38 -0.01 0.39 16 44 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.10 0.43 8.07 -2.39 -0.02 0.41 16 46 H 0.07 0.91 7.30 -2.39 -0.02 0.89 16 47 H 0.20 2.79 6.02 -2.91 -0.02 2.77 16 48 H 0.05 2.16 6.99 -2.39 -0.02 2.14 16 49 H 0.09 3.00 7.00 -2.39 -0.02 2.99 16 50 H 0.08 2.56 6.51 -2.38 -0.02 2.55 16 51 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -69.68 392.86 3.20 -66.48 By element: Atomic # 1 Polarization: 35.10 SS G_CDS: 0.10 Total: 35.20 kcal Atomic # 6 Polarization: 14.69 SS G_CDS: 9.71 Total: 24.40 kcal Atomic # 7 Polarization: -142.61 SS G_CDS: -8.57 Total: -151.18 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.06 Total: -22.49 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -69.68 3.20 -66.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755069535.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.858 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds