Wall clock time and date at job start Wed Apr 1 2020 04:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40448 * 126.82086 * 2 1 4 4 C 1.30712 * 106.79200 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.52998 * 180.02562 * 4 3 2 6 6 C 1.53005 * 117.49588 * 8.71810 * 5 4 3 7 7 C 1.53005 * 117.49707 * 300.06287 * 5 4 3 8 8 N 1.33244 * 108.94716 * 359.75942 * 4 3 2 9 9 C 1.30837 * 109.82712 * 0.40591 * 8 4 3 10 10 C 1.50698 * 125.96420 * 179.86465 * 9 8 4 11 11 C 1.50700 * 109.47151 * 269.69212 * 10 9 8 12 12 O 1.21284 * 120.00164 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99963 * 179.97438 * 11 10 9 14 14 C 1.46932 * 120.62883 * 180.02562 * 13 11 10 15 15 C 1.53192 * 108.77844 * 126.36628 * 14 13 11 16 16 C 1.53045 * 109.30943 * 54.63390 * 15 14 13 17 17 C 1.53003 * 109.45779 * 178.62811 * 16 15 14 18 18 N 1.46490 * 109.46384 * 58.65283 * 16 15 14 19 19 C 1.36935 * 120.00121 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16 21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16 22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19 26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19 27 27 C 1.53044 * 109.52582 * 298.63661 * 16 15 14 28 28 C 1.46920 * 120.63159 * 359.96999 * 13 11 10 29 29 H 1.08999 * 109.46819 * 270.04298 * 1 2 3 30 30 H 1.08997 * 109.47226 * 30.03935 * 1 2 3 31 31 H 1.08995 * 109.47368 * 150.04086 * 1 2 3 32 32 H 1.09000 * 115.55445 * 154.39142 * 5 4 3 33 33 H 1.08993 * 117.49771 * 0.02562 * 6 5 4 34 34 H 1.09004 * 117.49431 * 145.01902 * 6 5 4 35 35 H 1.09002 * 117.49487 * 214.97679 * 7 5 4 36 36 H 1.08997 * 117.49774 * 359.97283 * 7 5 4 37 37 H 1.08994 * 109.47490 * 149.69048 * 10 9 8 38 38 H 1.09009 * 109.46872 * 29.68309 * 10 9 8 39 39 H 1.08996 * 109.58846 * 6.57565 * 14 13 11 40 40 H 1.09003 * 109.57689 * 246.15068 * 14 13 11 41 41 H 1.08995 * 109.49437 * 294.68286 * 15 14 13 42 42 H 1.08996 * 109.52274 * 174.59662 * 15 14 13 43 43 H 1.08997 * 109.46965 * 300.02851 * 17 16 15 44 44 H 1.09002 * 109.46920 * 60.02578 * 17 16 15 45 45 H 1.08994 * 109.46997 * 180.02562 * 17 16 15 46 46 H 0.97000 * 120.00577 * 359.97352 * 18 16 15 47 47 H 0.97001 * 119.99885 * 359.97438 * 22 21 19 48 48 H 1.09000 * 109.49970 * 181.31217 * 27 16 15 49 49 H 1.09001 * 109.50257 * 301.41366 * 27 16 15 50 50 H 1.08998 * 109.58779 * 353.42447 * 28 13 11 51 51 H 1.09004 * 109.58787 * 113.70161 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5348 0.6766 0.0006 5 6 4.7776 1.5289 0.0013 6 6 4.6014 3.0348 0.2072 7 6 4.9763 2.4893 -1.1731 8 7 3.5097 -0.6556 0.0062 9 6 2.2707 -1.0761 0.0006 10 6 1.8246 -2.5155 0.0013 11 6 1.6761 -2.9961 -1.4193 12 8 1.9090 -2.2436 -2.3415 13 7 1.2844 -4.2621 -1.6649 14 6 1.1356 -4.7453 -3.0445 15 6 1.9625 -6.0241 -3.2110 16 6 1.5478 -7.0376 -2.1418 17 6 2.3475 -8.3289 -2.3262 18 7 0.1176 -7.3265 -2.2717 19 6 -0.4824 -8.2122 -1.4169 20 1 0.0987 -8.6974 -0.6467 21 6 -1.8376 -8.4864 -1.5402 22 7 -2.5458 -7.8954 -2.4792 23 14 -2.6562 -9.6941 -0.3736 24 1 -4.0971 -9.8113 -0.7134 25 1 -2.0079 -11.0239 -0.5029 26 1 -2.5143 -9.2077 1.0222 27 6 1.8271 -6.4590 -0.7528 28 6 0.9992 -5.1855 -0.5584 29 1 -0.3633 0.0008 1.0277 30 1 -0.3633 0.8896 -0.5144 31 1 -0.3634 -0.8903 -0.5132 32 1 5.6667 1.0634 0.4267 33 1 3.5866 3.4088 0.3425 34 1 5.3747 3.5599 0.7678 35 1 5.9961 2.6559 -1.5199 36 1 4.2083 2.5043 -1.9464 37 1 0.8670 -2.5989 0.5150 38 1 2.5673 -3.1258 0.5154 39 1 1.4944 -3.9853 -3.7386 40 1 0.0860 -4.9601 -3.2451 41 1 3.0211 -5.7899 -3.0992 42 1 1.7856 -6.4460 -4.2003 43 1 2.1484 -8.7414 -3.3153 44 1 3.4117 -8.1141 -2.2295 45 1 2.0520 -9.0510 -1.5651 46 1 -0.4046 -6.8904 -2.9631 47 1 -2.1208 -7.2680 -3.0847 48 1 1.5533 -7.1902 0.0078 49 1 2.8870 -6.2207 -0.6642 50 1 1.2680 -4.7159 0.3879 51 1 -0.0620 -5.4343 -0.5543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755134676.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:48 Heat of formation + Delta-G solvation = 75.727405 kcal Electronic energy + Delta-G solvation = -31345.571721 eV Core-core repulsion = 27282.301479 eV Total energy + Delta-G solvation = -4063.270242 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.30153 -41.38172 -39.38375 -38.17847 -36.23012 -34.95324 -34.46883 -33.78630 -32.18130 -30.63599 -30.11818 -28.98009 -28.17763 -25.71929 -24.79471 -24.32065 -24.29533 -23.31727 -22.18010 -21.14271 -20.73130 -19.77890 -18.86529 -18.48154 -18.06097 -17.23848 -16.93693 -16.69650 -16.46630 -16.31501 -15.88809 -15.66779 -15.34634 -15.03552 -14.89266 -14.79926 -14.64198 -14.23971 -14.19484 -14.11558 -13.55397 -13.37626 -13.21628 -13.12496 -12.80150 -12.73742 -12.69796 -12.57235 -12.43331 -12.24716 -12.12782 -11.89797 -11.89204 -11.73777 -11.49534 -11.45232 -11.13031 -11.08365 -10.92650 -10.81916 -10.71455 -10.21263 -9.71205 -8.95624 -8.20846 -5.15036 0.41086 1.25920 1.44484 1.57279 1.63999 1.72024 1.87227 2.01207 2.72994 2.79343 2.97505 3.29778 3.39380 3.47220 3.54542 3.71006 3.86289 3.89902 3.95278 3.98169 4.03739 4.10325 4.18575 4.23414 4.26705 4.29006 4.36824 4.51933 4.52656 4.61062 4.63737 4.72608 4.74398 4.79900 4.88200 4.96142 4.98844 5.03438 5.09121 5.13400 5.21532 5.23612 5.25620 5.33822 5.35151 5.51580 5.61307 5.72048 5.80227 6.34878 6.65037 6.99358 7.00805 7.23912 8.15051 8.28216 9.30516 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.002401 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.592021 B =11661.299113 C =12310.657854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.376 5.376 3 N -0.338 5.338 4 C 0.240 3.760 5 C -0.092 4.092 6 C -0.143 4.143 7 C -0.156 4.156 8 N -0.558 5.558 9 C 0.296 3.704 10 C -0.059 4.059 11 C 0.521 3.479 12 O -0.583 6.583 13 N -0.592 5.592 14 C 0.123 3.877 15 C -0.121 4.121 16 C 0.192 3.808 17 C -0.144 4.144 18 N -0.735 5.735 19 C -0.295 4.295 20 H 0.070 0.930 21 C -0.108 4.108 22 N -0.985 5.985 23 Si 1.116 2.884 24 H -0.305 1.305 25 H -0.286 1.286 26 H -0.275 1.275 27 C -0.130 4.130 28 C 0.117 3.883 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.076 0.924 37 H 0.152 0.848 38 H 0.155 0.845 39 H 0.079 0.921 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.042 0.958 46 H 0.356 0.644 47 H 0.242 0.758 48 H 0.069 0.931 49 H 0.077 0.923 50 H 0.112 0.888 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.683 15.563 8.628 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.166 5.166 3 N -0.167 5.167 4 C -0.042 4.042 5 C -0.113 4.113 6 C -0.181 4.181 7 C -0.194 4.194 8 N -0.286 5.286 9 C 0.019 3.981 10 C -0.101 4.101 11 C 0.308 3.692 12 O -0.464 6.464 13 N -0.324 5.324 14 C 0.000 4.000 15 C -0.160 4.160 16 C 0.103 3.897 17 C -0.203 4.203 18 N -0.377 5.377 19 C -0.427 4.427 20 H 0.088 0.912 21 C -0.299 4.299 22 N -0.634 5.634 23 Si 0.944 3.056 24 H -0.231 1.231 25 H -0.213 1.213 26 H -0.201 1.201 27 C -0.170 4.170 28 C -0.004 4.004 29 H 0.128 0.872 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.159 0.841 33 H 0.108 0.892 34 H 0.150 0.850 35 H 0.147 0.853 36 H 0.094 0.906 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.189 0.811 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.095 0.905 50 H 0.130 0.870 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.452 15.630 8.751 21.261 hybrid contribution 0.505 0.219 -1.227 1.344 sum 11.957 15.849 7.524 21.232 Atomic orbital electron populations 1.22294 0.71686 1.05766 1.05713 1.50333 1.09027 1.03302 1.53906 1.77823 1.01701 1.08592 1.28617 1.23678 0.93416 0.89415 0.97643 1.20284 0.92733 0.90655 1.07589 1.23096 1.03920 0.92036 0.99014 1.23090 1.03984 1.00947 0.91414 1.70195 1.20632 1.11574 1.26229 1.23710 0.86032 0.92407 0.95943 1.20366 1.07427 0.86842 0.95448 1.20489 0.76187 0.81440 0.91045 1.90721 1.52472 1.55599 1.47563 1.48067 1.65545 1.10778 1.08010 1.21386 0.99597 0.96013 0.83042 1.22023 1.00225 0.94328 0.99409 1.19786 0.83636 0.92690 0.93630 1.22128 0.99284 0.98349 1.00550 1.42682 1.04952 1.51790 1.38289 1.20146 0.94069 1.18178 1.10304 0.91188 1.26756 0.94761 1.05062 1.03354 1.70996 1.38311 1.32727 1.21404 0.82733 0.74510 0.74194 0.74168 1.23150 1.21319 1.20122 1.22209 0.99473 0.96716 0.98633 1.21786 1.00384 0.89565 0.88706 0.87171 0.88464 0.88460 0.84072 0.89174 0.85027 0.85313 0.90557 0.83060 0.82762 0.90292 0.92871 0.89978 0.91107 0.94569 0.91473 0.93917 0.81087 0.94715 0.91200 0.90494 0.86952 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 11.16 127.77 1.43 2.86 16 2 N -0.38 -9.72 4.04 -359.88 -1.45 -11.17 16 3 N -0.34 -9.87 12.24 -51.34 -0.63 -10.50 16 4 C 0.24 6.95 7.68 138.63 1.07 8.02 16 5 C -0.09 -1.95 6.33 -11.54 -0.07 -2.02 16 6 C -0.14 -2.26 10.14 30.62 0.31 -1.95 16 7 C -0.16 -2.74 10.24 30.62 0.31 -2.43 16 8 N -0.56 -17.26 11.19 -179.73 -2.01 -19.27 16 9 C 0.30 7.99 6.48 138.22 0.90 8.88 16 10 C -0.06 -1.21 4.17 29.10 0.12 -1.08 16 11 C 0.52 14.70 7.69 87.66 0.67 15.37 16 12 O -0.58 -21.53 15.45 -3.04 -0.05 -21.57 16 13 N -0.59 -16.58 2.97 -819.02 -2.43 -19.01 16 14 C 0.12 3.84 6.16 86.36 0.53 4.37 16 15 C -0.12 -3.61 4.96 30.67 0.15 -3.46 16 16 C 0.19 6.38 0.74 3.64 0.00 6.38 16 17 C -0.14 -4.64 8.44 71.98 0.61 -4.03 16 18 N -0.73 -31.55 4.14 -303.23 -1.25 -32.80 16 19 C -0.30 -14.38 8.68 84.03 0.73 -13.65 16 20 H 0.07 3.31 6.70 -2.91 -0.02 3.29 16 21 C -0.11 -5.79 5.50 84.86 0.47 -5.32 16 22 N -0.98 -58.16 13.70 21.65 0.30 -57.86 16 23 Si 1.12 48.93 29.92 68.60 2.05 50.98 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 25 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 27 C -0.13 -3.66 4.70 30.65 0.14 -3.51 16 28 C 0.12 3.06 6.08 86.34 0.52 3.58 16 29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.51 7.72 -2.39 -0.02 1.49 16 32 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.09 1.67 7.88 -2.39 -0.02 1.65 16 34 H 0.13 1.29 8.14 -2.38 -0.02 1.28 16 35 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.15 1.98 7.56 -2.39 -0.02 1.97 16 38 H 0.15 2.47 7.69 -2.38 -0.02 2.45 16 39 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16 40 H 0.05 1.88 6.94 -2.39 -0.02 1.86 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.04 1.48 7.27 -2.39 -0.02 1.47 16 46 H 0.36 16.75 5.29 -92.71 -0.49 16.26 16 47 H 0.24 14.27 6.77 -92.71 -0.63 13.64 16 48 H 0.07 2.11 7.31 -2.39 -0.02 2.09 16 49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.11 1.96 5.93 -2.39 -0.01 1.95 16 51 H 0.06 1.99 7.75 -2.38 -0.02 1.98 16 Total: -1.00 -75.75 405.48 3.01 -72.74 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.59 Total: 36.46 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 7.89 Total: 12.01 kcal Atomic # 7 Polarization: -143.13 SS G_CDS: -7.48 Total: -150.62 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal Total: -75.75 3.01 -72.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755134676.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.468 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds