Wall clock time and date at job start Wed Apr 1 2020 04:37:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 N 1.40448 * 126.82086 * 2 1
4 4 C 1.30712 * 106.79200 * 179.97438 * 3 2 1
5 5 C 1.50696 * 125.52998 * 180.02562 * 4 3 2
6 6 C 1.53005 * 117.49588 * 8.71810 * 5 4 3
7 7 C 1.53005 * 117.49707 * 300.06287 * 5 4 3
8 8 N 1.33244 * 108.94716 * 359.75942 * 4 3 2
9 9 C 1.30837 * 109.82712 * 0.40591 * 8 4 3
10 10 C 1.50698 * 125.96420 * 179.86465 * 9 8 4
11 11 C 1.50700 * 109.47151 * 269.69212 * 10 9 8
12 12 O 1.21284 * 120.00164 * 359.97438 * 11 10 9
13 13 N 1.34777 * 119.99963 * 179.97438 * 11 10 9
14 14 C 1.46932 * 120.62883 * 180.02562 * 13 11 10
15 15 C 1.53192 * 108.77844 * 126.36628 * 14 13 11
16 16 C 1.53045 * 109.30943 * 54.63390 * 15 14 13
17 17 C 1.53003 * 109.45779 * 178.62811 * 16 15 14
18 18 N 1.46490 * 109.46384 * 58.65283 * 16 15 14
19 19 C 1.36935 * 120.00121 * 179.97438 * 18 16 15
20 20 H 1.07997 * 120.00139 * 0.02562 * 19 18 16
21 21 C 1.38816 * 120.00401 * 180.02562 * 19 18 16
22 22 N 1.31624 * 119.99569 * 0.02562 * 21 19 18
23 23 Si 1.86800 * 120.00172 * 180.02562 * 21 19 18
24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19
25 25 H 1.48505 * 109.46653 * 299.99639 * 23 21 19
26 26 H 1.48495 * 109.47483 * 60.00002 * 23 21 19
27 27 C 1.53044 * 109.52582 * 298.63661 * 16 15 14
28 28 C 1.46920 * 120.63159 * 359.96999 * 13 11 10
29 29 H 1.08999 * 109.46819 * 270.04298 * 1 2 3
30 30 H 1.08997 * 109.47226 * 30.03935 * 1 2 3
31 31 H 1.08995 * 109.47368 * 150.04086 * 1 2 3
32 32 H 1.09000 * 115.55445 * 154.39142 * 5 4 3
33 33 H 1.08993 * 117.49771 * 0.02562 * 6 5 4
34 34 H 1.09004 * 117.49431 * 145.01902 * 6 5 4
35 35 H 1.09002 * 117.49487 * 214.97679 * 7 5 4
36 36 H 1.08997 * 117.49774 * 359.97283 * 7 5 4
37 37 H 1.08994 * 109.47490 * 149.69048 * 10 9 8
38 38 H 1.09009 * 109.46872 * 29.68309 * 10 9 8
39 39 H 1.08996 * 109.58846 * 6.57565 * 14 13 11
40 40 H 1.09003 * 109.57689 * 246.15068 * 14 13 11
41 41 H 1.08995 * 109.49437 * 294.68286 * 15 14 13
42 42 H 1.08996 * 109.52274 * 174.59662 * 15 14 13
43 43 H 1.08997 * 109.46965 * 300.02851 * 17 16 15
44 44 H 1.09002 * 109.46920 * 60.02578 * 17 16 15
45 45 H 1.08994 * 109.46997 * 180.02562 * 17 16 15
46 46 H 0.97000 * 120.00577 * 359.97352 * 18 16 15
47 47 H 0.97001 * 119.99885 * 359.97438 * 22 21 19
48 48 H 1.09000 * 109.49970 * 181.31217 * 27 16 15
49 49 H 1.09001 * 109.50257 * 301.41366 * 27 16 15
50 50 H 1.08998 * 109.58779 * 353.42447 * 28 13 11
51 51 H 1.09004 * 109.58787 * 113.70161 * 28 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 7 2.3067 1.1243 0.0000
4 6 3.5348 0.6766 0.0006
5 6 4.7776 1.5289 0.0013
6 6 4.6014 3.0348 0.2072
7 6 4.9763 2.4893 -1.1731
8 7 3.5097 -0.6556 0.0062
9 6 2.2707 -1.0761 0.0006
10 6 1.8246 -2.5155 0.0013
11 6 1.6761 -2.9961 -1.4193
12 8 1.9090 -2.2436 -2.3415
13 7 1.2844 -4.2621 -1.6649
14 6 1.1356 -4.7453 -3.0445
15 6 1.9625 -6.0241 -3.2110
16 6 1.5478 -7.0376 -2.1418
17 6 2.3475 -8.3289 -2.3262
18 7 0.1176 -7.3265 -2.2717
19 6 -0.4824 -8.2122 -1.4169
20 1 0.0987 -8.6974 -0.6467
21 6 -1.8376 -8.4864 -1.5402
22 7 -2.5458 -7.8954 -2.4792
23 14 -2.6562 -9.6941 -0.3736
24 1 -4.0971 -9.8113 -0.7134
25 1 -2.0079 -11.0239 -0.5029
26 1 -2.5143 -9.2077 1.0222
27 6 1.8271 -6.4590 -0.7528
28 6 0.9992 -5.1855 -0.5584
29 1 -0.3633 0.0008 1.0277
30 1 -0.3633 0.8896 -0.5144
31 1 -0.3634 -0.8903 -0.5132
32 1 5.6667 1.0634 0.4267
33 1 3.5866 3.4088 0.3425
34 1 5.3747 3.5599 0.7678
35 1 5.9961 2.6559 -1.5199
36 1 4.2083 2.5043 -1.9464
37 1 0.8670 -2.5989 0.5150
38 1 2.5673 -3.1258 0.5154
39 1 1.4944 -3.9853 -3.7386
40 1 0.0860 -4.9601 -3.2451
41 1 3.0211 -5.7899 -3.0992
42 1 1.7856 -6.4460 -4.2003
43 1 2.1484 -8.7414 -3.3153
44 1 3.4117 -8.1141 -2.2295
45 1 2.0520 -9.0510 -1.5651
46 1 -0.4046 -6.8904 -2.9631
47 1 -2.1208 -7.2680 -3.0847
48 1 1.5533 -7.1902 0.0078
49 1 2.8870 -6.2207 -0.6642
50 1 1.2680 -4.7159 0.3879
51 1 -0.0620 -5.4343 -0.5543
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755134676.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:48
Heat of formation + Delta-G solvation = 75.727405 kcal
Electronic energy + Delta-G solvation = -31345.571721 eV
Core-core repulsion = 27282.301479 eV
Total energy + Delta-G solvation = -4063.270242 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.24 seconds
Orbital eigenvalues (eV)
-43.30153 -41.38172 -39.38375 -38.17847 -36.23012 -34.95324 -34.46883 -33.78630
-32.18130 -30.63599 -30.11818 -28.98009 -28.17763 -25.71929 -24.79471 -24.32065
-24.29533 -23.31727 -22.18010 -21.14271 -20.73130 -19.77890 -18.86529 -18.48154
-18.06097 -17.23848 -16.93693 -16.69650 -16.46630 -16.31501 -15.88809 -15.66779
-15.34634 -15.03552 -14.89266 -14.79926 -14.64198 -14.23971 -14.19484 -14.11558
-13.55397 -13.37626 -13.21628 -13.12496 -12.80150 -12.73742 -12.69796 -12.57235
-12.43331 -12.24716 -12.12782 -11.89797 -11.89204 -11.73777 -11.49534 -11.45232
-11.13031 -11.08365 -10.92650 -10.81916 -10.71455 -10.21263 -9.71205 -8.95624
-8.20846 -5.15036 0.41086 1.25920 1.44484 1.57279 1.63999 1.72024
1.87227 2.01207 2.72994 2.79343 2.97505 3.29778 3.39380 3.47220
3.54542 3.71006 3.86289 3.89902 3.95278 3.98169 4.03739 4.10325
4.18575 4.23414 4.26705 4.29006 4.36824 4.51933 4.52656 4.61062
4.63737 4.72608 4.74398 4.79900 4.88200 4.96142 4.98844 5.03438
5.09121 5.13400 5.21532 5.23612 5.25620 5.33822 5.35151 5.51580
5.61307 5.72048 5.80227 6.34878 6.65037 6.99358 7.00805 7.23912
8.15051 8.28216 9.30516
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.018945 B = 0.002401 C = 0.002274
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1477.592021 B =11661.299113 C =12310.657854
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.376 5.376
3 N -0.338 5.338
4 C 0.240 3.760
5 C -0.092 4.092
6 C -0.143 4.143
7 C -0.156 4.156
8 N -0.558 5.558
9 C 0.296 3.704
10 C -0.059 4.059
11 C 0.521 3.479
12 O -0.583 6.583
13 N -0.592 5.592
14 C 0.123 3.877
15 C -0.121 4.121
16 C 0.192 3.808
17 C -0.144 4.144
18 N -0.735 5.735
19 C -0.295 4.295
20 H 0.070 0.930
21 C -0.108 4.108
22 N -0.985 5.985
23 Si 1.116 2.884
24 H -0.305 1.305
25 H -0.286 1.286
26 H -0.275 1.275
27 C -0.130 4.130
28 C 0.117 3.883
29 H 0.110 0.890
30 H 0.097 0.903
31 H 0.097 0.903
32 H 0.142 0.858
33 H 0.090 0.910
34 H 0.132 0.868
35 H 0.129 0.871
36 H 0.076 0.924
37 H 0.152 0.848
38 H 0.155 0.845
39 H 0.079 0.921
40 H 0.053 0.947
41 H 0.082 0.918
42 H 0.070 0.930
43 H 0.035 0.965
44 H 0.066 0.934
45 H 0.042 0.958
46 H 0.356 0.644
47 H 0.242 0.758
48 H 0.069 0.931
49 H 0.077 0.923
50 H 0.112 0.888
51 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.683 15.563 8.628 21.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.166 5.166
3 N -0.167 5.167
4 C -0.042 4.042
5 C -0.113 4.113
6 C -0.181 4.181
7 C -0.194 4.194
8 N -0.286 5.286
9 C 0.019 3.981
10 C -0.101 4.101
11 C 0.308 3.692
12 O -0.464 6.464
13 N -0.324 5.324
14 C 0.000 4.000
15 C -0.160 4.160
16 C 0.103 3.897
17 C -0.203 4.203
18 N -0.377 5.377
19 C -0.427 4.427
20 H 0.088 0.912
21 C -0.299 4.299
22 N -0.634 5.634
23 Si 0.944 3.056
24 H -0.231 1.231
25 H -0.213 1.213
26 H -0.201 1.201
27 C -0.170 4.170
28 C -0.004 4.004
29 H 0.128 0.872
30 H 0.115 0.885
31 H 0.115 0.885
32 H 0.159 0.841
33 H 0.108 0.892
34 H 0.150 0.850
35 H 0.147 0.853
36 H 0.094 0.906
37 H 0.169 0.831
38 H 0.172 0.828
39 H 0.097 0.903
40 H 0.071 0.929
41 H 0.100 0.900
42 H 0.089 0.911
43 H 0.054 0.946
44 H 0.085 0.915
45 H 0.061 0.939
46 H 0.189 0.811
47 H 0.053 0.947
48 H 0.088 0.912
49 H 0.095 0.905
50 H 0.130 0.870
51 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges 11.452 15.630 8.751 21.261
hybrid contribution 0.505 0.219 -1.227 1.344
sum 11.957 15.849 7.524 21.232
Atomic orbital electron populations
1.22294 0.71686 1.05766 1.05713 1.50333 1.09027 1.03302 1.53906
1.77823 1.01701 1.08592 1.28617 1.23678 0.93416 0.89415 0.97643
1.20284 0.92733 0.90655 1.07589 1.23096 1.03920 0.92036 0.99014
1.23090 1.03984 1.00947 0.91414 1.70195 1.20632 1.11574 1.26229
1.23710 0.86032 0.92407 0.95943 1.20366 1.07427 0.86842 0.95448
1.20489 0.76187 0.81440 0.91045 1.90721 1.52472 1.55599 1.47563
1.48067 1.65545 1.10778 1.08010 1.21386 0.99597 0.96013 0.83042
1.22023 1.00225 0.94328 0.99409 1.19786 0.83636 0.92690 0.93630
1.22128 0.99284 0.98349 1.00550 1.42682 1.04952 1.51790 1.38289
1.20146 0.94069 1.18178 1.10304 0.91188 1.26756 0.94761 1.05062
1.03354 1.70996 1.38311 1.32727 1.21404 0.82733 0.74510 0.74194
0.74168 1.23150 1.21319 1.20122 1.22209 0.99473 0.96716 0.98633
1.21786 1.00384 0.89565 0.88706 0.87171 0.88464 0.88460 0.84072
0.89174 0.85027 0.85313 0.90557 0.83060 0.82762 0.90292 0.92871
0.89978 0.91107 0.94569 0.91473 0.93917 0.81087 0.94715 0.91200
0.90494 0.86952 0.92175
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 1.44 11.16 127.77 1.43 2.86 16
2 N -0.38 -9.72 4.04 -359.88 -1.45 -11.17 16
3 N -0.34 -9.87 12.24 -51.34 -0.63 -10.50 16
4 C 0.24 6.95 7.68 138.63 1.07 8.02 16
5 C -0.09 -1.95 6.33 -11.54 -0.07 -2.02 16
6 C -0.14 -2.26 10.14 30.62 0.31 -1.95 16
7 C -0.16 -2.74 10.24 30.62 0.31 -2.43 16
8 N -0.56 -17.26 11.19 -179.73 -2.01 -19.27 16
9 C 0.30 7.99 6.48 138.22 0.90 8.88 16
10 C -0.06 -1.21 4.17 29.10 0.12 -1.08 16
11 C 0.52 14.70 7.69 87.66 0.67 15.37 16
12 O -0.58 -21.53 15.45 -3.04 -0.05 -21.57 16
13 N -0.59 -16.58 2.97 -819.02 -2.43 -19.01 16
14 C 0.12 3.84 6.16 86.36 0.53 4.37 16
15 C -0.12 -3.61 4.96 30.67 0.15 -3.46 16
16 C 0.19 6.38 0.74 3.64 0.00 6.38 16
17 C -0.14 -4.64 8.44 71.98 0.61 -4.03 16
18 N -0.73 -31.55 4.14 -303.23 -1.25 -32.80 16
19 C -0.30 -14.38 8.68 84.03 0.73 -13.65 16
20 H 0.07 3.31 6.70 -2.91 -0.02 3.29 16
21 C -0.11 -5.79 5.50 84.86 0.47 -5.32 16
22 N -0.98 -58.16 13.70 21.65 0.30 -57.86 16
23 Si 1.12 48.93 29.92 68.60 2.05 50.98 16
24 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16
25 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16
26 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16
27 C -0.13 -3.66 4.70 30.65 0.14 -3.51 16
28 C 0.12 3.06 6.08 86.34 0.52 3.58 16
29 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16
31 H 0.10 1.51 7.72 -2.39 -0.02 1.49 16
32 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16
33 H 0.09 1.67 7.88 -2.39 -0.02 1.65 16
34 H 0.13 1.29 8.14 -2.38 -0.02 1.28 16
35 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16
36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
37 H 0.15 1.98 7.56 -2.39 -0.02 1.97 16
38 H 0.15 2.47 7.69 -2.38 -0.02 2.45 16
39 H 0.08 2.57 7.00 -2.39 -0.02 2.55 16
40 H 0.05 1.88 6.94 -2.39 -0.02 1.86 16
41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16
42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16
43 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16
44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
45 H 0.04 1.48 7.27 -2.39 -0.02 1.47 16
46 H 0.36 16.75 5.29 -92.71 -0.49 16.26 16
47 H 0.24 14.27 6.77 -92.71 -0.63 13.64 16
48 H 0.07 2.11 7.31 -2.39 -0.02 2.09 16
49 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16
50 H 0.11 1.96 5.93 -2.39 -0.01 1.95 16
51 H 0.06 1.99 7.75 -2.38 -0.02 1.98 16
Total: -1.00 -75.75 405.48 3.01 -72.74
By element:
Atomic # 1 Polarization: 35.86 SS G_CDS: 0.59 Total: 36.46 kcal
Atomic # 6 Polarization: 4.12 SS G_CDS: 7.89 Total: 12.01 kcal
Atomic # 7 Polarization: -143.13 SS G_CDS: -7.48 Total: -150.62 kcal
Atomic # 8 Polarization: -21.53 SS G_CDS: -0.05 Total: -21.57 kcal
Atomic # 14 Polarization: 48.93 SS G_CDS: 2.05 Total: 50.98 kcal
Total: -75.75 3.01 -72.74 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755134676.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 148.468 kcal
(2) G-P(sol) polarization free energy of solvation -75.747 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.721 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.740 kcal
(6) G-S(sol) free energy of system = (1) + (5) 75.727 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.24 seconds