Wall clock time and date at job start Wed Apr 1 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30842 * 126.46342 * 2 1 4 4 N 1.28910 * 109.74106 * 180.02562 * 3 2 1 5 5 C 1.29835 * 109.47717 * 0.02736 * 4 3 2 6 6 N 1.34696 * 126.47081 * 180.02562 * 2 1 3 7 7 C 1.46256 * 128.84019 * 359.83075 * 6 2 1 8 8 C 1.53320 * 108.72240 * 197.12851 * 7 6 2 9 9 H 1.09000 * 109.43865 * 69.72997 * 8 7 6 10 10 C 1.50703 * 109.45213 * 189.67043 * 8 7 6 11 11 O 1.21278 * 119.99826 * 0.11647 * 10 8 7 12 12 N 1.34783 * 120.00065 * 180.11432 * 10 8 7 13 13 C 1.46499 * 119.99903 * 359.97438 * 12 10 8 14 14 C 1.46499 * 119.99826 * 180.02562 * 12 10 8 15 15 H 1.09002 * 109.47391 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.46840 * 120.00322 * 14 12 10 17 17 N 1.46504 * 109.47054 * 304.99499 * 16 14 12 18 18 C 1.36938 * 119.99997 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99654 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99791 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99636 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00370 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47330 * 89.99701 * 22 20 18 24 24 H 1.48503 * 109.47375 * 210.00124 * 22 20 18 25 25 H 1.48504 * 109.46903 * 330.00091 * 22 20 18 26 26 C 1.53002 * 109.46799 * 240.00088 * 14 12 10 27 27 C 1.53005 * 117.49643 * 248.74546 * 26 14 12 28 28 C 1.53002 * 117.49437 * 180.09073 * 26 14 12 29 29 C 1.53140 * 109.58603 * 309.70526 * 8 7 6 30 30 C 1.50805 * 128.51893 * 179.89839 * 5 4 3 31 31 H 1.08996 * 109.46578 * 269.96920 * 1 2 3 32 32 H 1.08996 * 109.47515 * 29.97543 * 1 2 3 33 33 H 1.09003 * 109.46450 * 149.97901 * 1 2 3 34 34 H 1.09003 * 109.59701 * 77.36107 * 7 6 2 35 35 H 1.09000 * 109.59930 * 316.89696 * 7 6 2 36 36 H 1.08994 * 109.47057 * 269.99924 * 13 12 10 37 37 H 1.09006 * 109.46711 * 30.00085 * 13 12 10 38 38 H 1.08998 * 109.46853 * 149.99878 * 13 12 10 39 39 H 1.08991 * 109.47625 * 64.99762 * 16 14 12 40 40 H 1.09002 * 109.46642 * 184.99913 * 16 14 12 41 41 H 0.97000 * 119.99700 * 0.02562 * 17 16 14 42 42 H 0.96997 * 119.99537 * 179.97438 * 21 20 18 43 43 H 1.08994 * 115.55292 * 34.41893 * 26 14 12 44 44 H 1.08999 * 117.50011 * 0.02562 * 27 26 14 45 45 H 1.08997 * 117.49550 * 145.02497 * 27 26 14 46 46 H 1.08999 * 117.49669 * 214.97697 * 28 26 14 47 47 H 1.08995 * 117.50214 * 359.97193 * 28 26 14 48 48 H 1.09003 * 109.50113 * 189.38019 * 29 8 7 49 49 H 1.09008 * 109.49839 * 309.44615 * 29 8 7 50 50 H 1.09005 * 109.72285 * 76.23421 * 30 5 4 51 51 H 1.08993 * 109.72927 * 315.55747 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9368 -2.4979 0.0022 8 6 3.1553 -3.3253 0.4281 9 1 3.3624 -3.1492 1.4837 10 6 2.8693 -4.7888 0.2101 11 8 1.7993 -5.1366 -0.2426 12 7 3.8026 -5.7111 0.5183 13 6 5.0953 -5.2908 1.0646 14 6 3.5247 -7.1337 0.3059 15 1 2.5213 -7.2507 -0.1037 16 6 4.5471 -7.7121 -0.6745 17 7 4.5389 -6.9246 -1.9098 18 6 5.3776 -7.2578 -2.9397 19 1 6.0453 -8.1009 -2.8412 20 6 5.3703 -6.5112 -4.1100 21 7 6.1767 -6.8312 -5.0997 22 14 4.2159 -5.0526 -4.2801 23 1 4.8950 -3.8245 -3.7945 24 1 3.8426 -4.8805 -5.7072 25 1 2.9922 -5.2931 -3.4739 26 6 3.6202 -7.8767 1.6399 27 6 4.7849 -8.8518 1.8236 28 6 3.3634 -9.3849 1.6284 29 6 4.3721 -2.9138 -0.4058 30 6 4.8053 -1.4969 -0.0045 31 1 -0.3632 -0.0006 1.0277 32 1 -0.3634 0.8901 -0.5134 33 1 -0.3632 -0.8899 -0.5142 34 1 1.6243 -2.7959 -0.9986 35 1 1.1205 -2.6606 0.7061 36 1 5.7965 -5.1196 0.2479 37 1 4.9673 -4.3694 1.6328 38 1 5.4838 -6.0707 1.7195 39 1 5.5403 -7.6760 -0.2271 40 1 4.2881 -8.7464 -0.9012 41 1 3.9395 -6.1671 -1.9981 42 1 6.1713 -6.3098 -5.9176 43 1 3.2901 -7.3166 2.5147 44 1 5.4833 -8.9636 0.9942 45 1 5.2207 -8.9334 2.8194 46 1 2.8646 -9.8171 2.4959 47 1 3.1259 -9.8478 0.6706 48 1 5.1908 -3.6097 -0.2228 49 1 4.1104 -2.9300 -1.4639 50 1 5.2484 -1.5144 0.9912 51 1 5.5305 -1.1171 -0.7241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755572305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:19 Heat of formation + Delta-G solvation = 94.553832 kcal Electronic energy + Delta-G solvation = -32564.928296 eV Core-core repulsion = 28502.474429 eV Total energy + Delta-G solvation = -4062.453867 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.45350 -40.64417 -38.38971 -36.84413 -35.42622 -34.49795 -34.08236 -31.94806 -31.32162 -30.65582 -28.70929 -27.55150 -26.87803 -25.39710 -24.25958 -23.28638 -22.56132 -21.84166 -21.57611 -20.62226 -19.54832 -18.98215 -17.76993 -17.60322 -16.78965 -16.57716 -16.27860 -15.72057 -15.29120 -15.15200 -14.71575 -14.38340 -14.31960 -14.16006 -13.98104 -13.83822 -13.63943 -13.31981 -13.01120 -12.88081 -12.79198 -12.62005 -12.55521 -12.42476 -12.06877 -11.78303 -11.71769 -11.63643 -11.48750 -11.29102 -11.12570 -10.92445 -10.88622 -10.54272 -10.42910 -10.27082 -10.24933 -9.98130 -9.74665 -9.68532 -9.08315 -8.99181 -8.63700 -7.32906 -5.85908 -3.21433 1.67207 2.20742 2.44158 2.74397 2.87574 3.25480 3.35141 3.38275 3.77315 3.85873 4.01987 4.11217 4.28636 4.31034 4.50266 4.58175 4.64151 4.73193 4.76266 4.89317 4.92052 4.95702 5.02532 5.06091 5.12224 5.15299 5.26128 5.38301 5.40285 5.41946 5.46373 5.49978 5.54431 5.61669 5.66959 5.67953 5.72457 5.77373 5.84218 5.90733 5.91868 6.06522 6.09282 6.15377 6.19350 6.45522 6.63234 6.70547 7.29206 7.89217 8.02476 8.33067 8.63219 9.11893 9.84433 10.04028 11.32305 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.004248 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.729241 B = 6589.695537 C = 8325.325107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.177 3.823 3 N -0.301 5.301 4 N -0.292 5.292 5 C 0.176 3.824 6 N -0.468 5.468 7 C 0.123 3.877 8 C -0.119 4.119 9 H 0.110 0.890 10 C 0.524 3.476 11 O -0.537 6.537 12 N -0.590 5.590 13 C 0.071 3.929 14 C 0.157 3.843 15 H 0.105 0.895 16 C 0.148 3.852 17 N -0.751 5.751 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.011 3.989 21 N -0.931 5.931 22 Si 0.870 3.130 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.274 1.274 26 C -0.161 4.161 27 C -0.183 4.183 28 C -0.171 4.171 29 C -0.139 4.139 30 C -0.029 4.029 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.099 0.901 48 H 0.110 0.890 49 H 0.080 0.920 50 H 0.098 0.902 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.847 4.627 18.388 20.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.090 4.090 3 N -0.142 5.142 4 N -0.131 5.131 5 C -0.092 4.092 6 N -0.160 5.160 7 C 0.000 4.000 8 C -0.141 4.141 9 H 0.128 0.872 10 C 0.310 3.690 11 O -0.414 6.414 12 N -0.321 5.321 13 C -0.072 4.072 14 C 0.054 3.946 15 H 0.123 0.877 16 C 0.020 3.980 17 N -0.397 5.397 18 C -0.374 4.374 19 H 0.108 0.892 20 C -0.186 4.186 21 N -0.578 5.578 22 Si 0.701 3.299 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.200 1.200 26 C -0.180 4.180 27 C -0.220 4.220 28 C -0.209 4.209 29 C -0.177 4.177 30 C -0.069 4.069 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.122 0.878 44 H 0.127 0.873 45 H 0.109 0.891 46 H 0.111 0.889 47 H 0.118 0.882 48 H 0.128 0.872 49 H 0.099 0.901 50 H 0.117 0.883 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.823 5.760 18.000 20.093 hybrid contribution -1.139 -0.322 -0.287 1.218 sum -7.962 5.438 17.713 20.167 Atomic orbital electron populations 1.20217 0.83741 1.04691 1.03964 1.24651 0.97086 0.82747 1.04559 1.74465 0.96166 1.23689 1.19885 1.74036 1.12235 1.08028 1.18788 1.24758 0.87118 0.92557 1.04729 1.45987 1.07060 1.08449 1.54460 1.21780 0.97579 0.75343 1.05313 1.21571 0.96444 0.92987 1.03056 0.87159 1.20016 0.84126 0.86927 0.77900 1.90728 1.24411 1.81591 1.44696 1.47614 1.15246 1.06380 1.62877 1.22012 0.85166 1.00711 0.99308 1.20959 1.01934 0.78294 0.93384 0.87708 1.21104 0.95863 0.94676 0.86393 1.42639 1.47743 1.35269 1.14028 1.19016 1.14000 1.12178 0.92256 0.89151 1.24607 0.98839 0.98882 0.96234 1.69683 1.40504 1.41758 1.05879 0.86753 0.81698 0.84017 0.77472 1.20918 1.21588 1.20017 1.22528 1.04713 0.92219 0.98570 1.23235 0.91901 1.03521 1.03306 1.22968 0.99394 0.95090 1.03438 1.22123 0.97733 0.96907 1.00929 1.20235 0.91227 0.90923 1.04504 0.89636 0.88653 0.90268 0.87909 0.87898 0.90843 0.91365 0.90351 0.94599 0.94516 0.80543 0.92978 0.87836 0.87274 0.89115 0.88938 0.88246 0.87215 0.90079 0.88333 0.87490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 10.29 36.00 0.37 -0.18 16 2 C 0.18 2.27 8.07 -155.45 -1.25 1.01 16 3 N -0.30 -4.80 12.23 32.70 0.40 -4.40 16 4 N -0.29 -4.74 12.21 32.76 0.40 -4.34 16 5 C 0.18 2.39 7.75 -155.31 -1.20 1.18 16 6 N -0.47 -5.86 3.11 -110.86 -0.35 -6.21 16 7 C 0.12 1.37 5.46 -4.01 -0.02 1.35 16 8 C -0.12 -1.27 1.73 -91.53 -0.16 -1.43 16 9 H 0.11 0.90 7.37 -51.93 -0.38 0.52 16 10 C 0.52 7.21 6.78 -10.98 -0.07 7.13 16 11 O -0.54 -9.21 15.15 5.56 0.08 -9.12 16 12 N -0.59 -7.56 2.24 -173.93 -0.39 -7.95 16 13 C 0.07 0.69 7.97 59.85 0.48 1.16 16 14 C 0.16 2.23 2.59 -67.93 -0.18 2.05 16 15 H 0.11 1.75 6.90 -51.93 -0.36 1.39 16 16 C 0.15 2.55 4.19 -4.04 -0.02 2.53 16 17 N -0.75 -16.81 5.24 -59.91 -0.31 -17.13 16 18 C -0.24 -6.62 10.47 -15.06 -0.16 -6.78 16 19 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 20 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 21 N -0.93 -28.61 13.97 55.49 0.78 -27.84 16 22 Si 0.87 21.88 27.73 -169.99 -4.71 17.17 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 25 H -0.27 -6.80 6.52 56.52 0.37 -6.43 16 26 C -0.16 -1.75 4.97 -90.61 -0.45 -2.20 16 27 C -0.18 -1.82 9.51 -26.69 -0.25 -2.07 16 28 C -0.17 -1.74 9.94 -26.69 -0.27 -2.01 16 29 C -0.14 -1.58 4.88 -26.40 -0.13 -1.71 16 30 C -0.03 -0.30 6.34 -27.57 -0.17 -0.48 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.56 8.04 -51.93 -0.42 0.14 16 34 H 0.10 1.30 7.79 -51.93 -0.40 0.90 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 0.82 6.80 -51.93 -0.35 0.47 16 37 H 0.07 0.47 6.09 -51.93 -0.32 0.15 16 38 H 0.08 0.67 7.20 -51.93 -0.37 0.30 16 39 H 0.04 0.60 6.30 -51.93 -0.33 0.27 16 40 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 41 H 0.36 8.26 4.93 -40.82 -0.20 8.06 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.11 1.23 5.80 -51.93 -0.30 0.93 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.10 1.10 7.66 -51.93 -0.40 0.70 16 48 H 0.11 1.16 4.43 -51.93 -0.23 0.93 16 49 H 0.08 1.17 8.12 -51.92 -0.42 0.75 16 50 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 395.42 15.07 5.96 5.96 Total: -1.00 -35.87 395.42 -9.57 -45.44 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.84 Total: 8.64 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -3.58 Total: -0.23 kcal Atomic # 7 Polarization: -68.38 SS G_CDS: 0.53 Total: -67.86 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.12 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.87 -9.57 -45.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755572305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.997 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds