Wall clock time and date at job start Wed Apr 1 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30842 * 126.46342 * 2 1 4 4 N 1.28910 * 109.74106 * 180.02562 * 3 2 1 5 5 C 1.29835 * 109.47717 * 0.02736 * 4 3 2 6 6 N 1.34696 * 126.47081 * 180.02562 * 2 1 3 7 7 C 1.46256 * 128.84019 * 359.83075 * 6 2 1 8 8 C 1.53320 * 108.72240 * 197.12851 * 7 6 2 9 9 H 1.09000 * 109.43865 * 69.72997 * 8 7 6 10 10 C 1.50703 * 109.45213 * 189.67043 * 8 7 6 11 11 O 1.21278 * 119.99826 * 0.11647 * 10 8 7 12 12 N 1.34783 * 120.00065 * 180.11432 * 10 8 7 13 13 C 1.46499 * 119.99903 * 359.97438 * 12 10 8 14 14 C 1.46499 * 119.99826 * 180.02562 * 12 10 8 15 15 H 1.09002 * 109.47391 * 359.97438 * 14 12 10 16 16 C 1.53000 * 109.46840 * 120.00322 * 14 12 10 17 17 N 1.46504 * 109.47054 * 304.99499 * 16 14 12 18 18 C 1.36938 * 119.99997 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99654 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99791 * 180.02562 * 18 17 16 21 21 N 1.31622 * 119.99636 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00370 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47330 * 89.99701 * 22 20 18 24 24 H 1.48503 * 109.47375 * 210.00124 * 22 20 18 25 25 H 1.48504 * 109.46903 * 330.00091 * 22 20 18 26 26 C 1.53002 * 109.46799 * 240.00088 * 14 12 10 27 27 C 1.53005 * 117.49643 * 248.74546 * 26 14 12 28 28 C 1.53002 * 117.49437 * 180.09073 * 26 14 12 29 29 C 1.53140 * 109.58603 * 309.70526 * 8 7 6 30 30 C 1.50805 * 128.51893 * 179.89839 * 5 4 3 31 31 H 1.08996 * 109.46578 * 269.96920 * 1 2 3 32 32 H 1.08996 * 109.47515 * 29.97543 * 1 2 3 33 33 H 1.09003 * 109.46450 * 149.97901 * 1 2 3 34 34 H 1.09003 * 109.59701 * 77.36107 * 7 6 2 35 35 H 1.09000 * 109.59930 * 316.89696 * 7 6 2 36 36 H 1.08994 * 109.47057 * 269.99924 * 13 12 10 37 37 H 1.09006 * 109.46711 * 30.00085 * 13 12 10 38 38 H 1.08998 * 109.46853 * 149.99878 * 13 12 10 39 39 H 1.08991 * 109.47625 * 64.99762 * 16 14 12 40 40 H 1.09002 * 109.46642 * 184.99913 * 16 14 12 41 41 H 0.97000 * 119.99700 * 0.02562 * 17 16 14 42 42 H 0.96997 * 119.99537 * 179.97438 * 21 20 18 43 43 H 1.08994 * 115.55292 * 34.41893 * 26 14 12 44 44 H 1.08999 * 117.50011 * 0.02562 * 27 26 14 45 45 H 1.08997 * 117.49550 * 145.02497 * 27 26 14 46 46 H 1.08999 * 117.49669 * 214.97697 * 28 26 14 47 47 H 1.08995 * 117.50214 * 359.97193 * 28 26 14 48 48 H 1.09003 * 109.50113 * 189.38019 * 29 8 7 49 49 H 1.09008 * 109.49839 * 309.44615 * 29 8 7 50 50 H 1.09005 * 109.72285 * 76.23421 * 30 5 4 51 51 H 1.08993 * 109.72927 * 315.55747 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5192 0.6814 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3076 -1.0832 -0.0005 7 6 1.9368 -2.4979 0.0022 8 6 3.1553 -3.3253 0.4281 9 1 3.3624 -3.1492 1.4837 10 6 2.8693 -4.7888 0.2101 11 8 1.7993 -5.1366 -0.2426 12 7 3.8026 -5.7111 0.5183 13 6 5.0953 -5.2908 1.0646 14 6 3.5247 -7.1337 0.3059 15 1 2.5213 -7.2507 -0.1037 16 6 4.5471 -7.7121 -0.6745 17 7 4.5389 -6.9246 -1.9098 18 6 5.3776 -7.2578 -2.9397 19 1 6.0453 -8.1009 -2.8412 20 6 5.3703 -6.5112 -4.1100 21 7 6.1767 -6.8312 -5.0997 22 14 4.2159 -5.0526 -4.2801 23 1 4.8950 -3.8245 -3.7945 24 1 3.8426 -4.8805 -5.7072 25 1 2.9922 -5.2931 -3.4739 26 6 3.6202 -7.8767 1.6399 27 6 4.7849 -8.8518 1.8236 28 6 3.3634 -9.3849 1.6284 29 6 4.3721 -2.9138 -0.4058 30 6 4.8053 -1.4969 -0.0045 31 1 -0.3632 -0.0006 1.0277 32 1 -0.3634 0.8901 -0.5134 33 1 -0.3632 -0.8899 -0.5142 34 1 1.6243 -2.7959 -0.9986 35 1 1.1205 -2.6606 0.7061 36 1 5.7965 -5.1196 0.2479 37 1 4.9673 -4.3694 1.6328 38 1 5.4838 -6.0707 1.7195 39 1 5.5403 -7.6760 -0.2271 40 1 4.2881 -8.7464 -0.9012 41 1 3.9395 -6.1671 -1.9981 42 1 6.1713 -6.3098 -5.9176 43 1 3.2901 -7.3166 2.5147 44 1 5.4833 -8.9636 0.9942 45 1 5.2207 -8.9334 2.8194 46 1 2.8646 -9.8171 2.4959 47 1 3.1259 -9.8478 0.6706 48 1 5.1908 -3.6097 -0.2228 49 1 4.1104 -2.9300 -1.4639 50 1 5.2484 -1.5144 0.9912 51 1 5.5305 -1.1171 -0.7241 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755572305.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:18 Heat of formation + Delta-G solvation = 72.272254 kcal Electronic energy + Delta-G solvation = -32565.894497 eV Core-core repulsion = 28502.474429 eV Total energy + Delta-G solvation = -4063.420069 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.43673 -41.68259 -39.39928 -37.83839 -36.56828 -36.02995 -35.10107 -33.51372 -32.67144 -31.52165 -30.02938 -28.44098 -27.82629 -26.64883 -25.45896 -24.29022 -23.80703 -23.06242 -22.49766 -21.60034 -20.60038 -20.23076 -19.32875 -18.74146 -17.78406 -17.58282 -17.32837 -16.92681 -16.35928 -16.15078 -16.12293 -15.55435 -15.40195 -15.20214 -15.14582 -14.87874 -14.77760 -14.70979 -14.01840 -13.96371 -13.90120 -13.54228 -13.46066 -13.34838 -13.29566 -13.05766 -12.95732 -12.81527 -12.66204 -12.37145 -12.33247 -12.23899 -12.10535 -11.91740 -11.88504 -11.45038 -11.36355 -11.20858 -11.07427 -10.94972 -10.72397 -10.07462 -9.67794 -9.33348 -8.08762 -5.39483 0.73135 1.22428 1.28095 1.29484 1.33657 1.40806 1.71363 1.91536 2.37813 2.92851 2.97890 3.12672 3.22515 3.23653 3.43911 3.46840 3.51654 3.75811 3.86523 3.90280 3.98627 4.04025 4.09830 4.13372 4.15971 4.23642 4.34931 4.40467 4.47460 4.57931 4.60495 4.61441 4.68724 4.73166 4.77280 4.82261 4.88778 4.89457 4.91136 4.94666 5.07050 5.09190 5.13320 5.17303 5.24391 5.35342 5.52071 5.72531 5.80788 6.15616 6.30353 6.99735 7.02559 7.61276 7.79760 7.96798 9.12788 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009575 B = 0.004248 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.729241 B = 6589.695537 C = 8325.325107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.181 3.819 3 N -0.343 5.343 4 N -0.331 5.331 5 C 0.173 3.827 6 N -0.470 5.470 7 C 0.124 3.876 8 C -0.108 4.108 9 H 0.148 0.852 10 C 0.518 3.482 11 O -0.577 6.577 12 N -0.590 5.590 13 C 0.062 3.938 14 C 0.166 3.834 15 H 0.077 0.923 16 C 0.146 3.854 17 N -0.754 5.754 18 C -0.222 4.222 19 H 0.066 0.934 20 C -0.050 4.050 21 N -0.977 5.977 22 Si 0.931 3.069 23 H -0.267 1.267 24 H -0.301 1.301 25 H -0.272 1.272 26 C -0.157 4.157 27 C -0.172 4.172 28 C -0.174 4.174 29 C -0.135 4.135 30 C -0.023 4.023 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.361 0.639 42 H 0.257 0.743 43 H 0.123 0.877 44 H 0.092 0.908 45 H 0.116 0.884 46 H 0.114 0.886 47 H 0.083 0.917 48 H 0.121 0.879 49 H 0.045 0.955 50 H 0.135 0.865 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.384 4.907 21.823 23.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.087 4.087 3 N -0.184 5.184 4 N -0.170 5.170 5 C -0.095 4.095 6 N -0.161 5.161 7 C 0.002 3.998 8 C -0.129 4.129 9 H 0.166 0.834 10 C 0.306 3.694 11 O -0.457 6.457 12 N -0.320 5.320 13 C -0.079 4.079 14 C 0.062 3.938 15 H 0.095 0.905 16 C 0.020 3.980 17 N -0.399 5.399 18 C -0.353 4.353 19 H 0.084 0.916 20 C -0.242 4.242 21 N -0.628 5.628 22 Si 0.760 3.240 23 H -0.193 1.193 24 H -0.228 1.228 25 H -0.198 1.198 26 C -0.176 4.176 27 C -0.209 4.209 28 C -0.212 4.212 29 C -0.173 4.173 30 C -0.062 4.062 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.144 0.856 36 H 0.076 0.924 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.193 0.807 42 H 0.066 0.934 43 H 0.141 0.859 44 H 0.110 0.890 45 H 0.134 0.866 46 H 0.132 0.868 47 H 0.101 0.899 48 H 0.139 0.861 49 H 0.064 0.936 50 H 0.153 0.847 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.348 6.044 21.498 23.509 hybrid contribution -0.967 -0.550 -1.337 1.739 sum -8.315 5.494 20.161 22.490 Atomic orbital electron populations 1.20442 0.80794 1.05612 1.05706 1.25424 0.98656 0.82171 1.02489 1.74378 0.96597 1.25359 1.22025 1.73940 1.12848 1.09598 1.20596 1.25295 0.88367 0.92300 1.03586 1.46097 1.06789 1.08839 1.54345 1.21825 0.98539 0.74552 1.04907 1.21544 0.95803 0.90547 1.05012 0.83409 1.20521 0.83645 0.88120 0.77088 1.90714 1.26177 1.82373 1.46463 1.47721 1.16258 1.05624 1.62404 1.22276 0.83228 1.03091 0.99308 1.20672 0.99069 0.79753 0.94336 0.90496 1.21295 0.97748 0.93791 0.85203 1.42681 1.46730 1.35750 1.14725 1.19028 1.12930 1.10311 0.93033 0.91596 1.25213 1.00821 1.01817 0.96344 1.69830 1.42915 1.43467 1.06590 0.85788 0.79975 0.81738 0.76528 1.19262 1.22824 1.19791 1.22389 1.05914 0.92313 0.97007 1.23236 0.91319 1.02311 1.04033 1.23046 0.99948 0.94562 1.03597 1.22081 0.98374 0.97933 0.98942 1.20377 0.90016 0.89286 1.06552 0.87355 0.88072 0.88963 0.89929 0.85638 0.92357 0.87694 0.88727 0.93144 0.95235 0.80670 0.93412 0.85897 0.88961 0.86565 0.86814 0.89870 0.86132 0.93627 0.84717 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.29 71.24 0.73 -0.22 16 2 C 0.18 4.39 8.07 138.14 1.11 5.50 16 3 N -0.34 -10.79 12.23 -50.46 -0.62 -11.41 16 4 N -0.33 -10.58 12.21 -50.28 -0.61 -11.20 16 5 C 0.17 4.42 7.75 138.14 1.07 5.49 16 6 N -0.47 -10.92 3.11 -504.65 -1.57 -12.49 16 7 C 0.12 2.50 5.46 86.53 0.47 2.97 16 8 C -0.11 -1.99 1.73 -11.38 -0.02 -2.01 16 9 H 0.15 1.65 7.37 -2.39 -0.02 1.63 16 10 C 0.52 13.16 6.78 87.66 0.59 13.75 16 11 O -0.58 -19.23 15.15 -3.02 -0.05 -19.27 16 12 N -0.59 -13.66 2.24 -822.58 -1.85 -15.50 16 13 C 0.06 0.98 7.97 127.77 1.02 2.00 16 14 C 0.17 4.44 2.59 44.99 0.12 4.56 16 15 H 0.08 2.54 6.90 -2.39 -0.02 2.52 16 16 C 0.15 4.94 4.19 86.38 0.36 5.30 16 17 N -0.75 -33.58 5.24 -343.45 -1.80 -35.38 16 18 C -0.22 -12.16 10.47 84.03 0.88 -11.28 16 19 H 0.07 3.90 8.06 -2.91 -0.02 3.88 16 20 C -0.05 -2.89 5.50 84.86 0.47 -2.43 16 21 N -0.98 -61.59 13.97 21.65 0.30 -61.29 16 22 Si 0.93 46.24 27.73 68.60 1.90 48.14 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.30 -15.46 7.11 99.48 0.71 -14.75 16 25 H -0.27 -13.24 6.52 99.48 0.65 -12.59 16 26 C -0.16 -2.95 4.97 -10.79 -0.05 -3.00 16 27 C -0.17 -2.89 9.51 30.62 0.29 -2.60 16 28 C -0.17 -3.12 9.94 30.62 0.30 -2.82 16 29 C -0.14 -2.76 4.88 30.81 0.15 -2.61 16 30 C -0.02 -0.42 6.34 30.05 0.19 -0.23 16 31 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.08 8.04 -2.39 -0.02 1.07 16 34 H 0.08 2.03 7.79 -2.39 -0.02 2.01 16 35 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 1.14 6.80 -2.39 -0.02 1.12 16 37 H 0.10 0.88 6.09 -2.38 -0.01 0.87 16 38 H 0.09 1.21 7.20 -2.39 -0.02 1.19 16 39 H 0.05 1.60 6.30 -2.39 -0.02 1.59 16 40 H 0.03 1.06 7.44 -2.39 -0.02 1.04 16 41 H 0.36 16.31 4.93 -92.71 -0.46 15.85 16 42 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.09 1.89 5.80 -2.39 -0.01 1.88 16 45 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.08 1.77 7.66 -2.39 -0.02 1.75 16 48 H 0.12 2.20 4.43 -2.39 -0.01 2.19 16 49 H 0.04 1.27 8.12 -2.38 -0.02 1.25 16 50 H 0.13 1.48 8.14 -2.38 -0.02 1.46 16 51 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -81.71 395.42 3.84 -77.86 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.44 Total: 28.16 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 7.69 Total: 12.38 kcal Atomic # 7 Polarization: -141.13 SS G_CDS: -6.14 Total: -147.28 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.05 Total: -19.27 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Total: -81.71 3.84 -77.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755572305.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.137 kcal (2) G-P(sol) polarization free energy of solvation -81.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds