Wall clock time and date at job start Wed Apr 1 2020 05:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 126.46827 * 2 1 4 4 N 1.28909 * 109.74400 * 180.02562 * 3 2 1 5 5 C 1.29836 * 109.47712 * 0.02562 * 4 3 2 6 6 N 1.34695 * 126.46378 * 180.02562 * 2 1 3 7 7 C 1.46260 * 128.84844 * 359.82500 * 6 2 1 8 8 C 1.53319 * 108.85480 * 197.00465 * 7 6 2 9 9 H 1.09000 * 109.45394 * 69.81944 * 8 7 6 10 10 C 1.50707 * 109.45068 * 189.74884 * 8 7 6 11 11 O 1.21271 * 120.00050 * 6.71194 * 10 8 7 12 12 N 1.34775 * 119.99795 * 186.71155 * 10 8 7 13 13 C 1.46497 * 120.00393 * 182.67818 * 12 10 8 14 14 C 1.46502 * 120.00047 * 2.68432 * 12 10 8 15 15 H 1.09007 * 109.46984 * 352.78141 * 14 12 10 16 16 C 1.53003 * 109.46923 * 232.78276 * 14 12 10 17 17 N 1.46506 * 109.47074 * 53.46092 * 16 14 12 18 18 C 1.36929 * 119.99722 * 182.07857 * 17 16 14 19 19 H 1.08004 * 120.00403 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99724 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99969 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99978 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47031 * 60.00097 * 22 20 18 24 24 H 1.48495 * 109.47079 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47139 * 300.00288 * 22 20 18 26 26 C 1.52994 * 109.47652 * 112.78034 * 14 12 10 27 27 C 1.53003 * 117.50338 * 248.62553 * 26 14 12 28 28 C 1.53005 * 117.50448 * 179.97438 * 26 14 12 29 29 C 1.53232 * 109.53399 * 309.91869 * 8 7 6 30 30 C 1.50796 * 128.52452 * 179.83403 * 5 4 3 31 31 H 1.08996 * 109.47363 * 269.97380 * 1 2 3 32 32 H 1.08994 * 109.47201 * 29.97876 * 1 2 3 33 33 H 1.09001 * 109.47204 * 149.97756 * 1 2 3 34 34 H 1.09001 * 109.59710 * 316.85432 * 7 6 2 35 35 H 1.09002 * 109.59383 * 77.15575 * 7 6 2 36 36 H 1.09002 * 109.47156 * 94.80135 * 13 12 10 37 37 H 1.08998 * 109.47668 * 214.81133 * 13 12 10 38 38 H 1.09002 * 109.46759 * 334.80482 * 13 12 10 39 39 H 1.09002 * 109.47246 * 173.45736 * 16 14 12 40 40 H 1.08994 * 109.46860 * 293.45740 * 16 14 12 41 41 H 0.96995 * 119.99904 * 2.08213 * 17 16 14 42 42 H 0.97009 * 119.99925 * 180.02562 * 21 20 18 43 43 H 1.09005 * 115.54821 * 34.33009 * 26 14 12 44 44 H 1.09001 * 117.49714 * 359.97438 * 27 26 14 45 45 H 1.08995 * 117.50237 * 145.02201 * 27 26 14 46 46 H 1.08995 * 117.49997 * 214.98471 * 28 26 14 47 47 H 1.09005 * 117.49078 * 359.97438 * 28 26 14 48 48 H 1.08999 * 109.40521 * 309.27170 * 29 8 7 49 49 H 1.08998 * 109.49209 * 189.25597 * 29 8 7 50 50 H 1.09003 * 109.73063 * 315.57886 * 30 5 4 51 51 H 1.09001 * 109.73187 * 76.25848 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0521 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6157 -0.0015 6 7 2.3075 -1.0833 -0.0005 7 6 1.9367 -2.4981 0.0024 8 6 3.1542 -3.3286 0.4248 9 1 3.3630 -3.1556 1.4806 10 6 2.8652 -4.7911 0.2040 11 8 1.8450 -5.1295 -0.3575 12 7 3.7406 -5.7228 0.6305 13 6 3.4886 -7.1412 0.3641 14 6 4.9442 -5.3174 1.3606 15 1 5.0261 -4.2304 1.3510 16 6 6.1770 -5.9276 0.6906 17 7 6.1794 -5.5836 -0.7335 18 6 7.1702 -6.0583 -1.5507 19 1 7.9497 -6.6867 -1.1456 20 6 7.1722 -5.7329 -2.9002 21 7 6.2221 -4.9676 -3.3939 22 14 8.5243 -6.3798 -4.0150 23 1 8.5066 -7.8648 -4.0042 24 1 8.2995 -5.8928 -5.3997 25 1 9.8412 -5.8970 -3.5275 26 6 4.8537 -5.8091 2.8065 27 6 4.6878 -4.7544 3.9025 28 6 6.0232 -5.4841 3.7380 29 6 4.3714 -2.9139 -0.4085 30 6 4.8050 -1.4972 -0.0058 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.1210 -2.6608 0.7068 35 1 1.6207 -2.7951 -0.9977 36 1 4.0101 -7.4383 -0.5458 37 1 3.8500 -7.7380 1.2015 38 1 2.4179 -7.3025 0.2384 39 1 7.0783 -5.5343 1.1609 40 1 6.1521 -7.0115 0.8026 41 1 5.4792 -5.0196 -1.0973 42 1 6.2232 -4.7405 -4.3370 43 1 4.3492 -6.7651 2.9472 44 1 4.6437 -3.7101 3.5934 45 1 4.0742 -5.0163 4.7644 46 1 6.2875 -6.2258 4.4917 47 1 6.8573 -4.9202 3.3204 48 1 4.1083 -2.9289 -1.4662 49 1 5.1905 -3.6098 -0.2273 50 1 5.5297 -1.1173 -0.7260 51 1 5.2492 -1.5151 0.9895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755572307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:28 Heat of formation + Delta-G solvation = 89.843389 kcal Electronic energy + Delta-G solvation = -32905.464356 eV Core-core repulsion = 28842.806228 eV Total energy + Delta-G solvation = -4062.658127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.26155 -40.50908 -38.06258 -36.74984 -35.47231 -34.06618 -33.96836 -31.69170 -31.23793 -30.47798 -28.36296 -27.33456 -27.17056 -24.60736 -24.10361 -23.17595 -22.62811 -21.76555 -21.33755 -20.66482 -19.78706 -18.82454 -17.75269 -17.28327 -16.63561 -16.23233 -16.07443 -15.42519 -15.02644 -14.85367 -14.70794 -14.36895 -14.09168 -13.95014 -13.88749 -13.77413 -13.34719 -13.18328 -13.15380 -12.74744 -12.66882 -12.40425 -12.21308 -12.04324 -11.76842 -11.73132 -11.65438 -11.45057 -11.27270 -11.12906 -10.98573 -10.89903 -10.77622 -10.50836 -10.30008 -10.24736 -10.10160 -10.00261 -9.78787 -9.58361 -9.00433 -8.88893 -8.45915 -7.07735 -5.88183 -3.18386 1.86244 2.40976 2.65218 2.92882 3.07693 3.37439 3.42519 3.43963 3.69600 4.10389 4.22178 4.32034 4.41983 4.48660 4.55408 4.61325 4.78828 4.80097 4.90657 4.96514 5.06088 5.07555 5.19052 5.26289 5.34603 5.35337 5.45978 5.48302 5.51719 5.54663 5.56843 5.59607 5.69855 5.74874 5.83940 5.87552 5.95898 5.98878 6.04118 6.07192 6.11241 6.24866 6.25336 6.33905 6.36394 6.49917 6.68609 6.90197 7.48827 7.59697 8.22167 8.29800 8.81838 9.41825 9.94282 10.28908 11.33779 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.004272 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.236774 B = 6553.374458 C = 8025.575924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.172 3.828 3 N -0.303 5.303 4 N -0.294 5.294 5 C 0.183 3.817 6 N -0.467 5.467 7 C 0.125 3.875 8 C -0.121 4.121 9 H 0.103 0.897 10 C 0.532 3.468 11 O -0.544 6.544 12 N -0.586 5.586 13 C 0.087 3.913 14 C 0.147 3.853 15 H 0.097 0.903 16 C 0.143 3.857 17 N -0.730 5.730 18 C -0.247 4.247 19 H 0.070 0.930 20 C -0.006 4.006 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C -0.163 4.163 27 C -0.182 4.182 28 C -0.167 4.167 29 C -0.136 4.136 30 C -0.029 4.029 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.034 0.966 40 H 0.029 0.971 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.108 0.892 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.101 0.899 48 H 0.090 0.910 49 H 0.117 0.883 50 H 0.109 0.891 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.377 1.414 14.065 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.095 4.095 3 N -0.144 5.144 4 N -0.133 5.133 5 C -0.085 4.085 6 N -0.158 5.158 7 C 0.002 3.998 8 C -0.143 4.143 9 H 0.121 0.879 10 C 0.318 3.682 11 O -0.422 6.422 12 N -0.316 5.316 13 C -0.056 4.056 14 C 0.043 3.957 15 H 0.114 0.886 16 C 0.015 3.985 17 N -0.378 5.378 18 C -0.378 4.378 19 H 0.088 0.912 20 C -0.203 4.203 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.182 4.182 27 C -0.219 4.219 28 C -0.205 4.205 29 C -0.174 4.174 30 C -0.069 4.069 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.223 0.777 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.119 0.881 48 H 0.109 0.891 49 H 0.135 0.865 50 H 0.127 0.873 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.374 2.575 13.672 16.238 hybrid contribution 0.200 -1.655 -0.767 1.835 sum -8.174 0.920 12.904 15.303 Atomic orbital electron populations 1.20185 0.83920 1.04542 1.03799 1.24594 0.96989 0.82883 1.05039 1.74438 0.96259 1.23772 1.19886 1.74036 1.12082 1.08145 1.19084 1.24833 0.87157 0.92463 1.04044 1.45965 1.07047 1.08394 1.54382 1.21751 0.97430 0.75418 1.05242 1.21622 0.96811 0.93033 1.02857 0.87910 1.19894 0.83050 0.86905 0.78313 1.90681 1.26597 1.82176 1.42700 1.47517 1.21975 1.07136 1.55008 1.21625 1.02180 0.79924 1.01824 1.21314 0.85608 1.00181 0.88590 0.88557 1.20983 0.93034 0.97717 0.86781 1.42491 1.31826 1.61141 1.02319 1.19119 1.03349 1.25485 0.89845 0.91176 1.24710 0.98462 1.00198 0.96918 1.69616 1.34012 1.40519 1.13535 0.86293 0.81520 0.78388 0.80086 1.21302 1.21682 1.21180 1.22608 1.03969 1.00420 0.91248 1.23033 1.00747 0.97423 1.00687 1.22943 0.92175 1.03435 1.01925 1.22190 0.97176 0.96729 1.01282 1.20243 0.91080 0.91242 1.04286 0.89811 0.88791 0.90351 0.88403 0.87702 0.91110 0.91789 0.90843 0.94854 0.95317 0.77747 0.93307 0.87364 0.88946 0.88925 0.88646 0.88097 0.89111 0.86490 0.87280 0.88819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.29 36.01 0.37 -0.21 16 2 C 0.17 2.38 8.07 -155.45 -1.25 1.13 16 3 N -0.30 -5.16 12.23 32.70 0.40 -4.76 16 4 N -0.29 -5.23 12.21 32.76 0.40 -4.83 16 5 C 0.18 2.81 7.75 -155.31 -1.20 1.61 16 6 N -0.47 -6.45 3.11 -110.86 -0.35 -6.79 16 7 C 0.12 1.54 5.53 -4.01 -0.02 1.52 16 8 C -0.12 -1.57 1.69 -91.48 -0.15 -1.72 16 9 H 0.10 1.13 7.43 -51.93 -0.39 0.74 16 10 C 0.53 8.19 6.99 -10.98 -0.08 8.12 16 11 O -0.54 -9.79 15.27 5.57 0.08 -9.70 16 12 N -0.59 -8.56 2.16 -173.93 -0.38 -8.94 16 13 C 0.09 1.26 9.44 59.85 0.56 1.82 16 14 C 0.15 1.94 1.67 -67.93 -0.11 1.83 16 15 H 0.10 1.22 4.09 -51.92 -0.21 1.01 16 16 C 0.14 2.41 5.08 -4.04 -0.02 2.39 16 17 N -0.73 -16.06 4.91 -59.90 -0.29 -16.36 16 18 C -0.25 -6.31 9.99 -15.06 -0.15 -6.46 16 19 H 0.07 1.75 7.83 -52.48 -0.41 1.33 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 21 N -0.93 -26.24 13.06 55.49 0.72 -25.51 16 22 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 C -0.16 -1.71 5.20 -90.62 -0.47 -2.18 16 27 C -0.18 -1.62 10.18 -26.70 -0.27 -1.89 16 28 C -0.17 -1.54 9.81 -26.70 -0.26 -1.80 16 29 C -0.14 -2.00 4.18 -26.33 -0.11 -2.11 16 30 C -0.03 -0.39 6.34 -27.56 -0.17 -0.57 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.59 8.04 -51.93 -0.42 0.18 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.42 7.69 -51.93 -0.40 1.02 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.06 0.76 6.90 -51.93 -0.36 0.40 16 38 H 0.07 1.05 7.25 -51.93 -0.38 0.68 16 39 H 0.03 0.56 7.53 -51.93 -0.39 0.16 16 40 H 0.03 0.50 7.76 -51.93 -0.40 0.10 16 41 H 0.39 8.77 4.91 -40.82 -0.20 8.57 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.11 1.12 7.02 -51.93 -0.36 0.75 16 44 H 0.09 0.80 8.05 -51.93 -0.42 0.38 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.10 0.96 7.68 -51.93 -0.40 0.56 16 48 H 0.09 1.60 8.12 -51.93 -0.42 1.18 16 49 H 0.12 1.92 3.17 -51.93 -0.16 1.75 16 50 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 51 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -32.79 398.41 -9.71 -42.50 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -7.84 Total: 10.81 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -3.45 Total: 1.20 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: 0.51 Total: -67.18 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.08 Total: -9.70 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.79 -9.71 -42.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755572307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.341 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds