Wall clock time and date at job start Wed Apr 1 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 126.46827 * 2 1 4 4 N 1.28909 * 109.74400 * 180.02562 * 3 2 1 5 5 C 1.29836 * 109.47712 * 0.02562 * 4 3 2 6 6 N 1.34695 * 126.46378 * 180.02562 * 2 1 3 7 7 C 1.46260 * 128.84844 * 359.82500 * 6 2 1 8 8 C 1.53319 * 108.85480 * 197.00465 * 7 6 2 9 9 H 1.09000 * 109.45394 * 69.81944 * 8 7 6 10 10 C 1.50707 * 109.45068 * 189.74884 * 8 7 6 11 11 O 1.21271 * 120.00050 * 6.71194 * 10 8 7 12 12 N 1.34775 * 119.99795 * 186.71155 * 10 8 7 13 13 C 1.46497 * 120.00393 * 182.67818 * 12 10 8 14 14 C 1.46502 * 120.00047 * 2.68432 * 12 10 8 15 15 H 1.09007 * 109.46984 * 352.78141 * 14 12 10 16 16 C 1.53003 * 109.46923 * 232.78276 * 14 12 10 17 17 N 1.46506 * 109.47074 * 53.46092 * 16 14 12 18 18 C 1.36929 * 119.99722 * 182.07857 * 17 16 14 19 19 H 1.08004 * 120.00403 * 0.02562 * 18 17 16 20 20 C 1.38813 * 119.99724 * 179.97438 * 18 17 16 21 21 N 1.31611 * 119.99969 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99978 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47031 * 60.00097 * 22 20 18 24 24 H 1.48495 * 109.47079 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47139 * 300.00288 * 22 20 18 26 26 C 1.52994 * 109.47652 * 112.78034 * 14 12 10 27 27 C 1.53003 * 117.50338 * 248.62553 * 26 14 12 28 28 C 1.53005 * 117.50448 * 179.97438 * 26 14 12 29 29 C 1.53232 * 109.53399 * 309.91869 * 8 7 6 30 30 C 1.50796 * 128.52452 * 179.83403 * 5 4 3 31 31 H 1.08996 * 109.47363 * 269.97380 * 1 2 3 32 32 H 1.08994 * 109.47201 * 29.97876 * 1 2 3 33 33 H 1.09001 * 109.47204 * 149.97756 * 1 2 3 34 34 H 1.09001 * 109.59710 * 316.85432 * 7 6 2 35 35 H 1.09002 * 109.59383 * 77.15575 * 7 6 2 36 36 H 1.09002 * 109.47156 * 94.80135 * 13 12 10 37 37 H 1.08998 * 109.47668 * 214.81133 * 13 12 10 38 38 H 1.09002 * 109.46759 * 334.80482 * 13 12 10 39 39 H 1.09002 * 109.47246 * 173.45736 * 16 14 12 40 40 H 1.08994 * 109.46860 * 293.45740 * 16 14 12 41 41 H 0.96995 * 119.99904 * 2.08213 * 17 16 14 42 42 H 0.97009 * 119.99925 * 180.02562 * 21 20 18 43 43 H 1.09005 * 115.54821 * 34.33009 * 26 14 12 44 44 H 1.09001 * 117.49714 * 359.97438 * 27 26 14 45 45 H 1.08995 * 117.50237 * 145.02201 * 27 26 14 46 46 H 1.08995 * 117.49997 * 214.98471 * 28 26 14 47 47 H 1.09005 * 117.49078 * 359.97438 * 28 26 14 48 48 H 1.08999 * 109.40521 * 309.27170 * 29 8 7 49 49 H 1.08998 * 109.49209 * 189.25597 * 29 8 7 50 50 H 1.09003 * 109.73063 * 315.57886 * 30 5 4 51 51 H 1.09001 * 109.73187 * 76.25848 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0521 0.0000 4 7 3.5192 0.6812 -0.0005 5 6 3.5816 -0.6157 -0.0015 6 7 2.3075 -1.0833 -0.0005 7 6 1.9367 -2.4981 0.0024 8 6 3.1542 -3.3286 0.4248 9 1 3.3630 -3.1556 1.4806 10 6 2.8652 -4.7911 0.2040 11 8 1.8450 -5.1295 -0.3575 12 7 3.7406 -5.7228 0.6305 13 6 3.4886 -7.1412 0.3641 14 6 4.9442 -5.3174 1.3606 15 1 5.0261 -4.2304 1.3510 16 6 6.1770 -5.9276 0.6906 17 7 6.1794 -5.5836 -0.7335 18 6 7.1702 -6.0583 -1.5507 19 1 7.9497 -6.6867 -1.1456 20 6 7.1722 -5.7329 -2.9002 21 7 6.2221 -4.9676 -3.3939 22 14 8.5243 -6.3798 -4.0150 23 1 8.5066 -7.8648 -4.0042 24 1 8.2995 -5.8928 -5.3997 25 1 9.8412 -5.8970 -3.5275 26 6 4.8537 -5.8091 2.8065 27 6 4.6878 -4.7544 3.9025 28 6 6.0232 -5.4841 3.7380 29 6 4.3714 -2.9139 -0.4085 30 6 4.8050 -1.4972 -0.0058 31 1 -0.3634 -0.0005 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.1210 -2.6608 0.7068 35 1 1.6207 -2.7951 -0.9977 36 1 4.0101 -7.4383 -0.5458 37 1 3.8500 -7.7380 1.2015 38 1 2.4179 -7.3025 0.2384 39 1 7.0783 -5.5343 1.1609 40 1 6.1521 -7.0115 0.8026 41 1 5.4792 -5.0196 -1.0973 42 1 6.2232 -4.7405 -4.3370 43 1 4.3492 -6.7651 2.9472 44 1 4.6437 -3.7101 3.5934 45 1 4.0742 -5.0163 4.7644 46 1 6.2875 -6.2258 4.4917 47 1 6.8573 -4.9202 3.3204 48 1 4.1083 -2.9289 -1.4662 49 1 5.1905 -3.6098 -0.2273 50 1 5.5297 -1.1173 -0.7260 51 1 5.2492 -1.5151 0.9895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755572307.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:47:27 Heat of formation + Delta-G solvation = 71.559807 kcal Electronic energy + Delta-G solvation = -32906.257191 eV Core-core repulsion = 28842.806228 eV Total energy + Delta-G solvation = -4063.450963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.39677 -41.68653 -39.09292 -37.92034 -36.66371 -35.57380 -35.13785 -33.02607 -32.76087 -31.49297 -29.75347 -28.39464 -28.33281 -26.11447 -25.37183 -24.39175 -23.66851 -22.83176 -22.40866 -21.70336 -20.89181 -20.04990 -19.06901 -18.84819 -17.70824 -17.37608 -17.22298 -16.57155 -16.54607 -16.17637 -15.79263 -15.47700 -15.38188 -15.21510 -14.99973 -14.87457 -14.83916 -14.50932 -14.00109 -13.86026 -13.66956 -13.49002 -13.27530 -13.20878 -13.14304 -12.94429 -12.82927 -12.68266 -12.62742 -12.40173 -12.29116 -12.26507 -12.12932 -12.01708 -11.66478 -11.40292 -11.24619 -11.17992 -11.03452 -10.90996 -10.71919 -10.03245 -9.66947 -8.95182 -7.92335 -5.19291 0.77422 1.33905 1.43092 1.49056 1.49427 1.55594 1.75234 1.96396 2.56570 2.90746 3.02605 3.15679 3.24247 3.43348 3.46801 3.53586 3.60212 3.78859 3.88735 3.95623 4.02839 4.07747 4.15831 4.18210 4.27336 4.33967 4.41235 4.43802 4.50581 4.56523 4.63138 4.66733 4.71719 4.80136 4.80706 4.87786 4.94255 4.95963 4.98498 5.01707 5.07290 5.09449 5.12927 5.20777 5.31259 5.36865 5.47379 5.55559 5.85540 6.28960 6.31783 7.01577 7.38551 7.65491 8.13168 8.36121 9.29543 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008861 B = 0.004272 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3159.236774 B = 6553.374458 C = 8025.575924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.182 3.818 3 N -0.343 5.343 4 N -0.330 5.330 5 C 0.177 3.823 6 N -0.467 5.467 7 C 0.128 3.872 8 C -0.110 4.110 9 H 0.133 0.867 10 C 0.526 3.474 11 O -0.574 6.574 12 N -0.586 5.586 13 C 0.090 3.910 14 C 0.156 3.844 15 H 0.104 0.896 16 C 0.140 3.860 17 N -0.741 5.741 18 C -0.239 4.239 19 H 0.076 0.924 20 C -0.066 4.066 21 N -0.962 5.962 22 Si 0.961 3.039 23 H -0.282 1.282 24 H -0.303 1.303 25 H -0.278 1.278 26 C -0.174 4.174 27 C -0.168 4.168 28 C -0.164 4.164 29 C -0.123 4.123 30 C -0.022 4.022 31 H 0.109 0.891 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.128 0.872 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.044 0.956 40 H 0.028 0.972 41 H 0.380 0.620 42 H 0.247 0.753 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.097 0.903 48 H 0.052 0.948 49 H 0.104 0.896 50 H 0.099 0.901 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.862 0.937 16.942 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.086 4.086 3 N -0.183 5.183 4 N -0.168 5.168 5 C -0.092 4.092 6 N -0.157 5.157 7 C 0.006 3.994 8 C -0.132 4.132 9 H 0.151 0.849 10 C 0.314 3.686 11 O -0.454 6.454 12 N -0.316 5.316 13 C -0.052 4.052 14 C 0.052 3.948 15 H 0.121 0.879 16 C 0.013 3.987 17 N -0.387 5.387 18 C -0.371 4.371 19 H 0.094 0.906 20 C -0.259 4.259 21 N -0.613 5.613 22 Si 0.792 3.208 23 H -0.208 1.208 24 H -0.230 1.230 25 H -0.204 1.204 26 C -0.193 4.193 27 C -0.205 4.205 28 C -0.202 4.202 29 C -0.162 4.162 30 C -0.061 4.061 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.113 0.887 34 H 0.146 0.854 35 H 0.108 0.892 36 H 0.053 0.947 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.216 0.784 42 H 0.056 0.944 43 H 0.131 0.869 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.115 0.885 48 H 0.071 0.929 49 H 0.122 0.878 50 H 0.117 0.883 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.827 2.082 16.604 18.919 hybrid contribution 0.357 -1.568 -1.615 2.279 sum -8.470 0.514 14.989 17.224 Atomic orbital electron populations 1.20457 0.80458 1.05753 1.05760 1.25469 0.98712 0.82020 1.02373 1.74362 0.96450 1.25385 1.22108 1.73943 1.12983 1.09395 1.20520 1.25034 0.88184 0.92191 1.03810 1.46060 1.06574 1.08911 1.54198 1.21802 0.97885 0.74404 1.05314 1.21552 0.96126 0.91392 1.04088 0.84911 1.20292 0.82755 0.87889 0.77681 1.90664 1.28009 1.82797 1.43937 1.47627 1.22134 1.07086 1.54735 1.21566 1.01821 0.80472 1.01377 1.21261 0.83321 1.00361 0.89816 0.87869 1.21164 0.95406 0.97853 0.84239 1.42679 1.30863 1.60849 1.04317 1.19508 1.03503 1.23836 0.90255 0.90631 1.25365 1.00564 1.01495 0.98461 1.69771 1.35923 1.42635 1.12954 0.85395 0.79682 0.77873 0.77885 1.20850 1.22958 1.20367 1.22455 1.05890 1.01455 0.89500 1.23131 1.00315 0.97158 0.99889 1.23029 0.92024 1.03676 1.01449 1.21955 0.97535 0.97292 0.99395 1.20247 0.90433 0.89814 1.05623 0.87312 0.87981 0.88721 0.85375 0.89203 0.94651 0.88874 0.90879 0.93836 0.95408 0.78394 0.94401 0.86869 0.88384 0.87438 0.87274 0.88495 0.92916 0.87847 0.88303 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.29 71.24 0.73 -0.26 16 2 C 0.18 4.79 8.07 138.14 1.11 5.91 16 3 N -0.34 -11.58 12.23 -50.46 -0.62 -12.20 16 4 N -0.33 -11.75 12.21 -50.28 -0.61 -12.36 16 5 C 0.18 5.36 7.75 138.14 1.07 6.43 16 6 N -0.47 -12.33 3.11 -504.66 -1.57 -13.90 16 7 C 0.13 2.97 5.53 86.53 0.48 3.45 16 8 C -0.11 -2.69 1.69 -11.35 -0.02 -2.71 16 9 H 0.13 2.46 7.43 -2.39 -0.02 2.45 16 10 C 0.53 15.79 6.99 87.66 0.61 16.40 16 11 O -0.57 -20.53 15.27 -3.00 -0.05 -20.57 16 12 N -0.59 -16.51 2.16 -822.59 -1.77 -18.29 16 13 C 0.09 2.56 9.44 127.77 1.21 3.77 16 14 C 0.16 3.82 1.67 44.99 0.07 3.89 16 15 H 0.10 2.39 4.09 -2.38 -0.01 2.38 16 16 C 0.14 4.54 5.08 86.38 0.44 4.98 16 17 N -0.74 -32.67 4.91 -343.44 -1.69 -34.35 16 18 C -0.24 -12.22 9.99 84.04 0.84 -11.38 16 19 H 0.08 3.71 7.83 -2.91 -0.02 3.68 16 20 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 21 N -0.96 -56.11 13.06 21.65 0.28 -55.83 16 22 Si 0.96 44.59 29.55 68.60 2.03 46.62 16 23 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 C -0.17 -3.08 5.20 -10.79 -0.06 -3.14 16 27 C -0.17 -2.30 10.18 30.61 0.31 -1.99 16 28 C -0.16 -2.45 9.81 30.61 0.30 -2.15 16 29 C -0.12 -3.65 4.18 30.85 0.13 -3.52 16 30 C -0.02 -0.58 6.34 30.06 0.19 -0.39 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.09 1.15 8.04 -2.39 -0.02 1.13 16 34 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.09 2.40 7.69 -2.39 -0.02 2.38 16 36 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 2.05 6.90 -2.39 -0.02 2.03 16 38 H 0.07 2.07 7.25 -2.39 -0.02 2.06 16 39 H 0.04 1.36 7.53 -2.39 -0.02 1.34 16 40 H 0.03 0.92 7.76 -2.39 -0.02 0.90 16 41 H 0.38 17.64 4.91 -92.71 -0.46 17.18 16 42 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 43 H 0.11 1.94 7.02 -2.38 -0.02 1.93 16 44 H 0.10 1.26 8.05 -2.39 -0.02 1.24 16 45 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.10 1.54 7.68 -2.38 -0.02 1.53 16 48 H 0.05 1.96 8.12 -2.39 -0.02 1.94 16 49 H 0.10 3.39 3.17 -2.39 -0.01 3.38 16 50 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 51 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -73.60 398.41 4.39 -69.21 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.50 Total: 35.49 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 7.89 Total: 16.19 kcal Atomic # 7 Polarization: -140.95 SS G_CDS: -5.98 Total: -146.93 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: -0.05 Total: -20.57 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -73.60 4.39 -69.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755572307.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.767 kcal (2) G-P(sol) polarization free energy of solvation -73.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds