Wall clock time and date at job start Wed Apr 1 2020 04:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35245 * 126.07138 * 2 1 4 4 C 1.40397 * 107.87024 * 180.02562 * 3 2 1 5 5 N 1.40194 * 125.97323 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99941 * 359.97438 * 5 4 3 7 7 O 1.21587 * 120.00100 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99974 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.91057 * 31.10016 * 9 8 6 11 11 C 1.56406 * 110.99627 * 267.21464 * 9 8 6 12 12 C 1.54955 * 105.62439 * 217.45416 * 11 9 8 13 13 C 1.50320 * 104.64333 * 351.62072 * 12 11 9 14 14 H 1.08991 * 110.00266 * 280.51558 * 13 12 11 15 15 C 1.50934 * 125.64777 * 145.36489 * 13 12 11 16 16 N 1.50106 * 102.23543 * 204.88790 * 15 13 12 17 17 C 1.46898 * 110.99845 * 146.85149 * 16 15 13 18 18 C 1.49624 * 107.75232 * 25.11982 * 16 15 13 19 19 C 1.50348 * 104.82461 * 7.07484 * 18 16 15 20 20 H 1.09001 * 109.68274 * 80.90942 * 19 18 16 21 21 N 1.31214 * 108.05483 * 0.26433 * 4 3 2 22 22 N 1.34967 * 126.07218 * 180.02562 * 2 1 3 23 23 C 1.46501 * 125.97640 * 0.02562 * 22 2 1 24 24 C 1.50700 * 109.46802 * 90.00251 * 23 22 2 25 25 H 1.07997 * 120.00211 * 0.02562 * 24 23 22 26 26 C 1.37880 * 119.99962 * 179.97438 * 24 23 22 27 27 N 1.31521 * 119.99643 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 120.00109 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47109 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47020 * 120.00525 * 28 26 24 31 31 H 1.48499 * 109.47032 * 239.99917 * 28 26 24 32 32 H 1.08999 * 109.47720 * 90.02468 * 1 2 3 33 33 H 1.09008 * 109.47213 * 210.02265 * 1 2 3 34 34 H 1.09003 * 109.47548 * 330.02016 * 1 2 3 35 35 H 1.08004 * 126.06433 * 0.02562 * 3 2 1 36 36 H 0.96997 * 120.00340 * 180.02562 * 5 4 3 37 37 H 0.96998 * 120.00291 * 359.97438 * 8 6 5 38 38 H 1.08994 * 110.18359 * 335.99226 * 11 9 8 39 39 H 1.08997 * 110.18281 * 97.75654 * 11 9 8 40 40 H 1.08996 * 110.07904 * 232.88614 * 12 11 9 41 41 H 1.09002 * 110.43795 * 110.53436 * 12 11 9 42 42 H 1.09005 * 110.85167 * 86.70690 * 15 13 12 43 43 H 1.09000 * 111.02985 * 323.15223 * 15 13 12 44 44 H 1.09000 * 109.47508 * 59.87761 * 17 16 15 45 45 H 1.09006 * 109.47245 * 179.88181 * 17 16 15 46 46 H 1.09007 * 109.47227 * 299.87161 * 17 16 15 47 47 H 1.09001 * 110.36771 * 125.90979 * 18 16 15 48 48 H 1.09001 * 110.36873 * 248.24235 * 18 16 15 49 49 H 1.09001 * 109.46833 * 210.00363 * 23 22 2 50 50 H 1.08997 * 109.46938 * 330.00413 * 23 22 2 51 51 H 0.96994 * 119.99544 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7736 1.4752 -0.0003 6 6 4.6368 2.8161 0.0001 7 8 3.5276 3.3140 -0.0002 8 7 5.7296 3.6049 -0.0001 9 6 5.5809 5.0624 0.0010 10 1 4.6744 5.3606 0.5277 11 6 5.5937 5.6280 -1.4572 12 6 6.3664 6.9688 -1.3779 13 6 6.5628 7.2079 0.0931 14 1 5.6487 7.6087 0.5310 15 6 7.7676 7.8616 0.7249 16 7 7.7451 7.2945 2.1145 17 6 9.1078 7.1267 2.6368 18 6 7.0262 5.9834 2.0606 19 6 6.7974 5.7301 0.5964 20 1 7.7038 5.3232 0.1482 21 7 3.6336 -0.6575 -0.0067 22 7 2.3016 -1.0909 -0.0005 23 6 1.8501 -2.4846 -0.0016 24 6 1.6959 -2.9614 -1.4229 25 1 1.9129 -2.2933 -2.2432 26 6 1.2787 -4.2510 -1.6760 27 7 1.0148 -5.0647 -0.6770 28 14 1.0882 -4.8423 -3.4376 29 1 1.4450 -3.7430 -4.3700 30 1 1.9878 -6.0004 -3.6710 31 1 -0.3193 -5.2537 -3.6722 32 1 -0.3634 -0.0004 -1.0276 33 1 -0.3634 -0.8898 0.5142 34 1 -0.3634 0.8902 0.5135 35 1 1.9719 2.1211 0.0004 36 1 5.6586 1.0780 -0.0011 37 1 6.6145 3.2077 -0.0002 38 1 6.1148 4.9401 -2.1229 39 1 4.5740 5.7893 -1.8069 40 1 5.7726 7.7695 -1.8187 41 1 7.3288 6.8839 -1.8825 42 1 7.6543 8.9455 0.7463 43 1 8.6833 7.5791 0.2054 44 1 9.6097 8.0940 2.6602 45 1 9.0623 6.7164 3.6456 46 1 9.6626 6.4450 1.9921 47 1 7.6435 5.1944 2.4902 48 1 6.0743 6.0507 2.5873 49 1 2.5846 -3.1049 0.5121 50 1 0.8912 -2.5563 0.5117 51 1 0.7210 -5.9718 -0.8550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772387092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:15 Heat of formation + Delta-G solvation = 70.268442 kcal Electronic energy + Delta-G solvation = -30240.801572 eV Core-core repulsion = 26177.294611 eV Total energy + Delta-G solvation = -4063.506961 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.20259 -40.59258 -39.37926 -36.44889 -34.73867 -33.94745 -33.27011 -31.39799 -30.80997 -30.37962 -29.69910 -26.79641 -26.33479 -25.94517 -25.41768 -23.14441 -21.93296 -21.55764 -20.96141 -20.03314 -19.77324 -19.47706 -17.74861 -17.04373 -16.67122 -16.26156 -15.72884 -15.42667 -15.31825 -15.15928 -14.95955 -14.46454 -14.26420 -14.17262 -14.01785 -13.70578 -13.40854 -13.19070 -12.94149 -12.48475 -12.45825 -12.29060 -12.25611 -12.02942 -11.98220 -11.82824 -11.64574 -11.53697 -11.37661 -11.11390 -11.07448 -10.86300 -10.83724 -10.55933 -10.40762 -10.24651 -9.98958 -9.64371 -9.50688 -9.22571 -8.79879 -8.63792 -7.88945 -7.38134 -6.24512 -4.31815 2.38131 2.66843 3.11122 3.20494 3.28391 3.34289 3.43483 3.46709 3.64119 3.85483 4.22030 4.27308 4.34152 4.48218 4.59968 4.74828 4.84231 4.90287 4.93040 5.00367 5.08507 5.09179 5.19649 5.21998 5.30211 5.40379 5.43644 5.45691 5.54888 5.61285 5.67785 5.73141 5.78961 5.88129 5.96264 5.99253 6.14231 6.23048 6.30422 6.35137 6.48595 6.54775 6.63599 6.64799 6.96903 7.07404 7.16034 7.55047 7.68783 7.90442 7.96697 8.09400 8.61309 8.69806 8.77947 9.34377 10.82689 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.001848 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.233744 B =15144.108751 C =15296.971328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.565 6.565 8 N -0.738 5.738 9 C 0.184 3.816 10 H 0.104 0.896 11 C -0.136 4.136 12 C -0.102 4.102 13 C -0.112 4.112 14 H 0.089 0.911 15 C 0.055 3.945 16 N -0.531 5.531 17 C 0.017 3.983 18 C 0.054 3.946 19 C -0.142 4.142 20 H 0.077 0.923 21 N -0.325 5.325 22 N -0.318 5.318 23 C 0.258 3.742 24 C -0.534 4.534 25 H 0.065 0.935 26 C 0.064 3.936 27 N -0.892 5.892 28 Si 0.906 3.094 29 H -0.272 1.272 30 H -0.281 1.281 31 H -0.281 1.281 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.160 0.840 36 H 0.405 0.595 37 H 0.395 0.605 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.051 0.949 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.026 0.974 47 H 0.063 0.937 48 H 0.084 0.916 49 H 0.051 0.949 50 H 0.054 0.946 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.697 24.834 3.184 28.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.413 3.587 7 O -0.440 6.440 8 N -0.393 5.393 9 C 0.078 3.922 10 H 0.122 0.878 11 C -0.175 4.175 12 C -0.140 4.140 13 C -0.131 4.131 14 H 0.107 0.893 15 C -0.072 4.072 16 N -0.254 5.254 17 C -0.132 4.132 18 C -0.073 4.073 19 C -0.162 4.162 20 H 0.096 0.904 21 N -0.155 5.155 22 N -0.101 5.101 23 C 0.141 3.859 24 C -0.572 4.572 25 H 0.083 0.917 26 C -0.139 4.139 27 N -0.530 5.530 28 Si 0.733 3.267 29 H -0.196 1.196 30 H -0.207 1.207 31 H -0.206 1.206 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.178 0.822 36 H 0.240 0.760 37 H 0.229 0.771 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.045 0.955 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.069 0.931 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.050 24.283 3.611 27.803 hybrid contribution 0.988 -0.898 -1.508 2.014 sum 14.038 23.385 2.103 27.356 Atomic orbital electron populations 1.20326 0.87941 1.02780 1.03127 1.21058 0.94880 0.87181 1.00975 1.21229 0.89687 0.99803 1.21273 1.18659 0.86566 0.89246 1.02655 1.41408 1.07561 1.03771 1.76663 1.15651 0.84838 0.80369 0.77881 1.90870 1.23483 1.73427 1.56192 1.45082 1.07463 1.06108 1.80676 1.21019 0.98177 0.77252 0.95799 0.87836 1.23246 1.01498 0.96040 0.96700 1.21314 1.00593 0.97516 0.94620 1.22095 0.99800 0.94782 0.96460 0.89265 1.22384 0.96609 1.00013 0.88169 1.65153 1.16095 1.22909 1.21285 1.22542 0.89254 1.01265 1.00108 1.22173 1.00091 0.90133 0.94907 1.22719 0.98942 0.97533 0.96991 0.90430 1.77246 0.99958 1.08344 1.29975 1.48953 1.00893 1.07715 1.52515 1.19677 0.95952 0.71406 0.98893 1.21369 1.46519 0.97903 0.91442 0.91720 1.24934 0.94741 0.96100 0.98094 1.69932 1.45093 1.07041 1.30945 0.86307 0.77856 0.78773 0.83786 1.19599 1.20696 1.20643 0.90468 0.90908 0.90836 0.82230 0.76030 0.77084 0.91078 0.90480 0.91111 0.91512 0.89755 0.93079 0.91309 0.91207 0.95526 0.91877 0.89755 0.93059 0.92793 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.09 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -6.05 9.52 -39.84 -0.38 -6.43 16 4 C 0.28 5.81 8.11 -154.36 -1.25 4.56 16 5 N -0.64 -10.05 5.46 -15.51 -0.08 -10.13 16 6 C 0.71 10.40 8.53 -86.92 -0.74 9.66 16 7 O -0.56 -10.18 13.11 5.29 0.07 -10.11 16 8 N -0.74 -7.20 5.16 -57.86 -0.30 -7.50 16 9 C 0.18 1.61 3.08 -67.10 -0.21 1.40 16 10 H 0.10 1.12 7.54 -51.93 -0.39 0.73 16 11 C -0.14 -1.09 6.67 -23.87 -0.16 -1.25 16 12 C -0.10 -0.62 6.59 -27.04 -0.18 -0.79 16 13 C -0.11 -0.71 2.86 -90.32 -0.26 -0.97 16 14 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 15 C 0.06 0.34 6.57 -3.06 -0.02 0.32 16 16 N -0.53 -3.86 5.57 -240.56 -1.34 -5.20 16 17 C 0.02 0.10 9.23 60.06 0.55 0.66 16 18 C 0.05 0.39 6.73 -3.62 -0.02 0.37 16 19 C -0.14 -0.96 2.30 -90.28 -0.21 -1.17 16 20 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 21 N -0.32 -7.56 12.59 31.44 0.40 -7.17 16 22 N -0.32 -7.63 3.59 -58.33 -0.21 -7.84 16 23 C 0.26 6.68 5.99 -5.19 -0.03 6.65 16 24 C -0.53 -14.80 9.39 -34.44 -0.32 -15.13 16 25 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 26 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 27 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 28 Si 0.91 21.21 29.54 -169.99 -5.02 16.19 16 29 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 31 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.07 1.27 7.07 -51.92 -0.37 0.90 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.16 3.28 5.91 -52.48 -0.31 2.97 16 36 H 0.41 5.04 8.84 -40.82 -0.36 4.68 16 37 H 0.40 2.79 8.66 -40.82 -0.35 2.43 16 38 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.29 7.86 -51.93 -0.41 -0.12 16 44 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.03 0.15 8.12 -51.93 -0.42 -0.27 16 47 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 48 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 50 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 51 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 408.30 15.07 6.15 6.15 Total: -1.00 -32.80 408.30 -11.54 -44.34 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -8.41 Total: 5.85 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: -3.53 Total: -0.18 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: -0.80 Total: -62.26 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -32.80 -11.54 -44.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772387092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.612 kcal (2) G-P(sol) polarization free energy of solvation -32.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds