Wall clock time and date at job start Wed Apr 1 2020 04:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35245 * 126.07138 * 2 1 4 4 C 1.40397 * 107.87024 * 180.02562 * 3 2 1 5 5 N 1.40194 * 125.97323 * 180.02562 * 4 3 2 6 6 C 1.34782 * 119.99941 * 359.97438 * 5 4 3 7 7 O 1.21587 * 120.00100 * 359.97438 * 6 5 4 8 8 N 1.34773 * 119.99776 * 180.02562 * 6 5 4 9 9 C 1.46505 * 119.99974 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.91057 * 31.10016 * 9 8 6 11 11 C 1.56406 * 110.99627 * 267.21464 * 9 8 6 12 12 C 1.54955 * 105.62439 * 217.45416 * 11 9 8 13 13 C 1.50320 * 104.64333 * 351.62072 * 12 11 9 14 14 H 1.08991 * 110.00266 * 280.51558 * 13 12 11 15 15 C 1.50934 * 125.64777 * 145.36489 * 13 12 11 16 16 N 1.50106 * 102.23543 * 204.88790 * 15 13 12 17 17 C 1.46898 * 110.99845 * 146.85149 * 16 15 13 18 18 C 1.49624 * 107.75232 * 25.11982 * 16 15 13 19 19 C 1.50348 * 104.82461 * 7.07484 * 18 16 15 20 20 H 1.09001 * 109.68274 * 80.90942 * 19 18 16 21 21 N 1.31214 * 108.05483 * 0.26433 * 4 3 2 22 22 N 1.34967 * 126.07218 * 180.02562 * 2 1 3 23 23 C 1.46501 * 125.97640 * 0.02562 * 22 2 1 24 24 C 1.50700 * 109.46802 * 90.00251 * 23 22 2 25 25 H 1.07997 * 120.00211 * 0.02562 * 24 23 22 26 26 C 1.37880 * 119.99962 * 179.97438 * 24 23 22 27 27 N 1.31521 * 119.99643 * 0.02562 * 26 24 23 28 28 Si 1.86797 * 120.00109 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.47109 * 0.02562 * 28 26 24 30 30 H 1.48498 * 109.47020 * 120.00525 * 28 26 24 31 31 H 1.48499 * 109.47032 * 239.99917 * 28 26 24 32 32 H 1.08999 * 109.47720 * 90.02468 * 1 2 3 33 33 H 1.09008 * 109.47213 * 210.02265 * 1 2 3 34 34 H 1.09003 * 109.47548 * 330.02016 * 1 2 3 35 35 H 1.08004 * 126.06433 * 0.02562 * 3 2 1 36 36 H 0.96997 * 120.00340 * 180.02562 * 5 4 3 37 37 H 0.96998 * 120.00291 * 359.97438 * 8 6 5 38 38 H 1.08994 * 110.18359 * 335.99226 * 11 9 8 39 39 H 1.08997 * 110.18281 * 97.75654 * 11 9 8 40 40 H 1.08996 * 110.07904 * 232.88614 * 12 11 9 41 41 H 1.09002 * 110.43795 * 110.53436 * 12 11 9 42 42 H 1.09005 * 110.85167 * 86.70690 * 15 13 12 43 43 H 1.09000 * 111.02985 * 323.15223 * 15 13 12 44 44 H 1.09000 * 109.47508 * 59.87761 * 17 16 15 45 45 H 1.09006 * 109.47245 * 179.88181 * 17 16 15 46 46 H 1.09007 * 109.47227 * 299.87161 * 17 16 15 47 47 H 1.09001 * 110.36771 * 125.90979 * 18 16 15 48 48 H 1.09001 * 110.36873 * 248.24235 * 18 16 15 49 49 H 1.09001 * 109.46833 * 210.00363 * 23 22 2 50 50 H 1.08997 * 109.46938 * 330.00413 * 23 22 2 51 51 H 0.96994 * 119.99544 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7736 1.4752 -0.0003 6 6 4.6368 2.8161 0.0001 7 8 3.5276 3.3140 -0.0002 8 7 5.7296 3.6049 -0.0001 9 6 5.5809 5.0624 0.0010 10 1 4.6744 5.3606 0.5277 11 6 5.5937 5.6280 -1.4572 12 6 6.3664 6.9688 -1.3779 13 6 6.5628 7.2079 0.0931 14 1 5.6487 7.6087 0.5310 15 6 7.7676 7.8616 0.7249 16 7 7.7451 7.2945 2.1145 17 6 9.1078 7.1267 2.6368 18 6 7.0262 5.9834 2.0606 19 6 6.7974 5.7301 0.5964 20 1 7.7038 5.3232 0.1482 21 7 3.6336 -0.6575 -0.0067 22 7 2.3016 -1.0909 -0.0005 23 6 1.8501 -2.4846 -0.0016 24 6 1.6959 -2.9614 -1.4229 25 1 1.9129 -2.2933 -2.2432 26 6 1.2787 -4.2510 -1.6760 27 7 1.0148 -5.0647 -0.6770 28 14 1.0882 -4.8423 -3.4376 29 1 1.4450 -3.7430 -4.3700 30 1 1.9878 -6.0004 -3.6710 31 1 -0.3193 -5.2537 -3.6722 32 1 -0.3634 -0.0004 -1.0276 33 1 -0.3634 -0.8898 0.5142 34 1 -0.3634 0.8902 0.5135 35 1 1.9719 2.1211 0.0004 36 1 5.6586 1.0780 -0.0011 37 1 6.6145 3.2077 -0.0002 38 1 6.1148 4.9401 -2.1229 39 1 4.5740 5.7893 -1.8069 40 1 5.7726 7.7695 -1.8187 41 1 7.3288 6.8839 -1.8825 42 1 7.6543 8.9455 0.7463 43 1 8.6833 7.5791 0.2054 44 1 9.6097 8.0940 2.6602 45 1 9.0623 6.7164 3.6456 46 1 9.6626 6.4450 1.9921 47 1 7.6435 5.1944 2.4902 48 1 6.0743 6.0507 2.5873 49 1 2.5846 -3.1049 0.5121 50 1 0.8912 -2.5563 0.5117 51 1 0.7210 -5.9718 -0.8550 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772387092.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:14 Heat of formation + Delta-G solvation = 48.170384 kcal Electronic energy + Delta-G solvation = -30241.759815 eV Core-core repulsion = 26177.294611 eV Total energy + Delta-G solvation = -4064.465204 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.34253 -41.73812 -40.56972 -37.18677 -36.22854 -35.33786 -34.72011 -32.94304 -32.58142 -30.95167 -30.39900 -28.56460 -27.86382 -26.83321 -25.94705 -24.98834 -23.17539 -22.20454 -21.75415 -21.23084 -21.00802 -20.54793 -19.03257 -18.76018 -17.94734 -17.44335 -17.04517 -16.62770 -16.38974 -16.22588 -15.91863 -15.74898 -15.68035 -15.34780 -14.82871 -14.66649 -14.38076 -14.29313 -13.98387 -13.79310 -13.73555 -13.69852 -13.52021 -13.14321 -13.04142 -12.86786 -12.72085 -12.67483 -12.52784 -12.38003 -12.26210 -12.11080 -12.05357 -11.71402 -11.57058 -11.43010 -11.34179 -11.17277 -11.06761 -10.73375 -10.17086 -9.55598 -9.32054 -9.06904 -8.32319 -6.49973 1.02755 1.11891 1.36713 1.38382 1.51214 1.67265 2.08196 2.35194 2.39340 2.90215 2.93200 2.96945 3.14453 3.67602 3.83727 3.88965 3.99630 4.16877 4.18247 4.30286 4.34750 4.40946 4.44930 4.48743 4.57801 4.60174 4.65152 4.72784 4.77353 4.80085 4.84091 4.90410 4.95392 4.98377 5.02355 5.03058 5.08257 5.13143 5.14517 5.17544 5.21160 5.27368 5.43981 5.54499 5.58310 5.81418 5.81768 5.87979 5.98490 6.06691 6.27959 6.62254 6.75598 7.13852 7.20896 7.43661 8.73521 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.001848 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.233744 B =15144.108751 C =15296.971328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.086 3.914 3 C -0.298 4.298 4 C 0.293 3.707 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.599 6.599 8 N -0.714 5.714 9 C 0.181 3.819 10 H 0.081 0.919 11 C -0.133 4.133 12 C -0.093 4.093 13 C -0.105 4.105 14 H 0.076 0.924 15 C 0.058 3.942 16 N -0.546 5.546 17 C 0.017 3.983 18 C 0.054 3.946 19 C -0.133 4.133 20 H 0.092 0.908 21 N -0.360 5.360 22 N -0.343 5.343 23 C 0.275 3.725 24 C -0.551 4.551 25 H 0.049 0.951 26 C 0.022 3.978 27 N -0.918 5.918 28 Si 0.972 3.028 29 H -0.274 1.274 30 H -0.274 1.274 31 H -0.267 1.267 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.166 0.834 36 H 0.421 0.579 37 H 0.413 0.587 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.032 0.968 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.024 0.976 50 H 0.052 0.948 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.905 26.195 2.123 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.329 4.329 4 C 0.038 3.962 5 N -0.288 5.288 6 C 0.412 3.588 7 O -0.477 6.477 8 N -0.370 5.370 9 C 0.075 3.925 10 H 0.099 0.901 11 C -0.172 4.172 12 C -0.131 4.131 13 C -0.124 4.124 14 H 0.095 0.905 15 C -0.069 4.069 16 N -0.270 5.270 17 C -0.131 4.131 18 C -0.073 4.073 19 C -0.153 4.153 20 H 0.110 0.890 21 N -0.191 5.191 22 N -0.126 5.126 23 C 0.156 3.844 24 C -0.589 4.589 25 H 0.067 0.933 26 C -0.179 4.179 27 N -0.556 5.556 28 Si 0.796 3.204 29 H -0.199 1.199 30 H -0.200 1.200 31 H -0.192 1.192 32 H 0.102 0.898 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.183 0.817 36 H 0.258 0.742 37 H 0.250 0.750 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.070 0.930 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.321 25.681 2.562 29.515 hybrid contribution 0.666 -1.184 -1.110 1.754 sum 14.987 24.497 1.451 28.754 Atomic orbital electron populations 1.20462 0.85399 1.04179 1.03912 1.21734 0.96639 0.86477 0.99538 1.21397 0.89993 0.99838 1.21647 1.18943 0.88082 0.88889 1.00332 1.41398 1.07020 1.03850 1.76525 1.15817 0.85416 0.80030 0.77562 1.90840 1.25259 1.73858 1.57722 1.44949 1.07018 1.06188 1.78857 1.21096 0.98378 0.76341 0.96666 0.90082 1.23200 1.01010 0.97285 0.95733 1.21250 1.01049 0.96333 0.94469 1.22046 0.99581 0.94233 0.96573 0.90535 1.22401 0.96694 1.00221 0.87551 1.65132 1.17008 1.22737 1.22157 1.22566 0.88595 1.01870 1.00111 1.22123 0.99606 0.90593 0.94976 1.22596 0.98242 0.97570 0.96859 0.89012 1.77166 1.00052 1.09743 1.32152 1.48754 1.01674 1.07446 1.54711 1.19246 0.94931 0.72453 0.97769 1.21464 1.47366 0.98324 0.91779 0.93306 1.25737 0.93999 0.95946 1.02223 1.70011 1.45184 1.07516 1.32919 0.85300 0.78474 0.78059 0.78584 1.19892 1.19973 1.19189 0.89843 0.91255 0.87645 0.81688 0.74218 0.75050 0.90848 0.92096 0.90488 0.90016 0.89286 0.91954 0.90570 0.91322 0.94926 0.91378 0.91348 0.95748 0.92982 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 10.11 71.23 0.72 -2.07 16 2 C 0.09 3.73 6.92 41.38 0.29 4.01 16 3 C -0.30 -12.51 9.52 22.11 0.21 -12.29 16 4 C 0.29 12.11 8.11 133.31 1.08 13.19 16 5 N -0.64 -19.47 5.46 -321.23 -1.75 -21.22 16 6 C 0.71 20.29 8.53 179.05 1.53 21.82 16 7 O -0.60 -21.57 13.11 -3.99 -0.05 -21.62 16 8 N -0.71 -12.97 5.16 -455.24 -2.35 -15.32 16 9 C 0.18 2.99 3.08 45.53 0.14 3.13 16 10 H 0.08 1.77 7.54 -2.39 -0.02 1.75 16 11 C -0.13 -1.96 6.67 32.45 0.22 -1.75 16 12 C -0.09 -0.92 6.59 30.40 0.20 -0.71 16 13 C -0.10 -1.15 2.86 -10.60 -0.03 -1.18 16 14 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 15 C 0.06 0.58 6.57 85.00 0.56 1.14 16 16 N -0.55 -7.04 5.57 -915.00 -5.10 -12.14 16 17 C 0.02 0.17 9.23 127.69 1.18 1.35 16 18 C 0.05 0.73 6.73 84.91 0.57 1.30 16 19 C -0.13 -1.56 2.30 -10.57 -0.02 -1.59 16 20 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 21 N -0.36 -17.15 12.59 -54.44 -0.69 -17.83 16 22 N -0.34 -16.88 3.59 -338.45 -1.22 -18.10 16 23 C 0.27 14.70 5.99 85.63 0.51 15.21 16 24 C -0.55 -31.17 9.39 25.60 0.24 -30.93 16 25 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 26 C 0.02 1.20 5.46 84.65 0.46 1.66 16 27 N -0.92 -52.05 13.29 21.45 0.28 -51.77 16 28 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 29 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 30 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 31 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 32 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.07 2.41 7.07 -2.38 -0.02 2.39 16 34 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.17 6.77 5.91 -2.91 -0.02 6.75 16 36 H 0.42 10.02 8.84 -92.71 -0.82 9.20 16 37 H 0.41 4.88 8.66 -92.71 -0.80 4.07 16 38 H 0.07 1.06 8.09 -2.39 -0.02 1.04 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.06 0.50 7.86 -2.39 -0.02 0.48 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 46 H 0.03 0.28 8.12 -2.38 -0.02 0.26 16 47 H 0.07 0.83 7.65 -2.39 -0.02 0.81 16 48 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 49 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.05 2.75 7.04 -2.39 -0.02 2.74 16 51 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -71.56 408.30 -1.66 -73.23 By element: Atomic # 1 Polarization: 27.80 SS G_CDS: -0.67 Total: 27.13 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 7.85 Total: 12.29 kcal Atomic # 7 Polarization: -125.57 SS G_CDS: -10.82 Total: -136.39 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.05 Total: -21.62 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.56 -1.66 -73.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772387092.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.396 kcal (2) G-P(sol) polarization free energy of solvation -71.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds