Wall clock time and date at job start Wed Apr 1 2020 04:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.52999 * 109.47202 * 173.04070 * 3 2 1 5 5 C 1.52995 * 109.47275 * 185.00077 * 4 3 2 6 6 C 1.53004 * 109.47022 * 293.04113 * 3 2 1 7 7 N 1.46896 * 109.47312 * 66.02863 * 6 3 2 8 8 C 1.46903 * 111.00045 * 200.01289 * 7 6 3 9 9 C 1.50705 * 109.47105 * 63.01891 * 8 7 6 10 10 H 1.08000 * 120.00092 * 5.11494 * 9 8 7 11 11 C 1.37881 * 119.99593 * 185.11341 * 9 8 7 12 12 N 1.31509 * 120.00027 * 354.92764 * 11 9 8 13 13 Si 1.86800 * 119.99544 * 174.92730 * 11 9 8 14 14 H 1.48490 * 109.47381 * 90.00109 * 13 11 9 15 15 H 1.48499 * 109.47038 * 210.00184 * 13 11 9 16 16 H 1.48501 * 109.47014 * 329.99739 * 13 11 9 17 17 C 1.37705 * 111.00540 * 76.05523 * 7 6 3 18 18 C 1.38164 * 120.64082 * 0.02562 * 17 7 6 19 19 C 1.39258 * 119.01484 * 180.02562 * 18 17 7 20 20 C 1.50702 * 119.78058 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47662 * 0.02562 * 20 19 18 22 22 C 1.42889 * 114.00402 * 180.02562 * 21 20 19 23 23 N 1.31650 * 120.43391 * 0.02562 * 19 18 17 24 24 C 1.33788 * 121.22668 * 359.97438 * 23 19 18 25 25 N 1.32856 * 132.41329 * 179.97438 * 24 23 19 26 26 C 1.32731 * 109.74050 * 180.02562 * 25 24 23 27 27 N 1.31066 * 109.62489 * 359.97438 * 26 25 24 28 28 N 1.36508 * 120.64695 * 180.02562 * 17 7 6 29 29 H 1.08999 * 109.47079 * 68.16542 * 1 2 3 30 30 H 1.09001 * 109.46852 * 188.16739 * 1 2 3 31 31 H 1.09000 * 109.46687 * 308.16498 * 1 2 3 32 32 H 1.09003 * 109.46862 * 239.99963 * 2 1 3 33 33 H 1.09000 * 109.46953 * 120.00272 * 2 1 3 34 34 H 1.09000 * 109.47199 * 53.03792 * 3 2 1 35 35 H 1.09000 * 109.47046 * 304.99966 * 4 3 2 36 36 H 1.09005 * 109.47116 * 64.99881 * 4 3 2 37 37 H 1.08997 * 109.47098 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46993 * 299.99922 * 5 4 3 39 39 H 1.09005 * 109.47209 * 59.99860 * 5 4 3 40 40 H 1.08996 * 109.46889 * 306.01928 * 6 3 2 41 41 H 1.08999 * 109.46649 * 186.02808 * 6 3 2 42 42 H 1.08995 * 109.46991 * 183.02267 * 8 7 6 43 43 H 1.09002 * 109.46551 * 303.02186 * 8 7 6 44 44 H 0.96997 * 119.99620 * 180.02562 * 12 11 9 45 45 H 1.08000 * 120.49433 * 359.97438 * 18 17 7 46 46 H 1.08998 * 109.47193 * 120.02118 * 20 19 18 47 47 H 1.09005 * 109.46967 * 240.01551 * 20 19 18 48 48 H 1.09004 * 109.47309 * 60.00034 * 22 21 20 49 49 H 1.09001 * 109.47185 * 179.97438 * 22 21 20 50 50 H 1.09006 * 109.47523 * 299.99913 * 22 21 20 51 51 H 1.08000 * 125.19165 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5601 1.4460 0.1748 5 6 4.0557 2.8881 0.2998 6 6 1.6778 2.1115 -1.3275 7 7 0.2179 2.2381 -1.4296 8 6 -0.1983 2.4208 -2.8266 9 6 0.1761 1.1994 -3.6261 10 1 0.5980 0.3378 -3.1301 11 6 -0.0200 1.1821 -4.9908 12 7 -0.6246 2.1898 -5.5811 13 14 0.5732 -0.2729 -6.0011 14 1 -0.5048 -1.2908 -6.0833 15 1 0.9266 0.1854 -7.3687 16 1 1.7694 -0.8697 -5.3545 17 6 -0.2451 3.2657 -0.6384 18 6 0.6304 4.0224 0.1166 19 6 0.1254 5.0531 0.9052 20 6 1.0648 5.8897 1.7351 21 8 2.4053 5.4336 1.5426 22 6 3.3806 6.1636 2.2894 23 7 -1.1672 5.3015 0.9304 24 6 -2.0269 4.5774 0.2048 25 7 -3.3469 4.6304 0.0637 26 6 -3.7458 3.6866 -0.7800 27 7 -2.7081 3.0066 -1.2024 28 7 -1.5777 3.5566 -0.5848 29 1 -0.3633 0.3822 -0.9539 30 1 -0.3633 -1.0173 0.1460 31 1 -0.3633 0.6350 0.8080 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5786 1.9910 0.8211 35 1 3.8235 0.8919 1.0757 36 1 4.0264 0.9753 -0.6907 37 1 5.1385 2.8906 0.4248 38 1 3.7923 3.4422 -0.6011 39 1 3.5893 3.3588 1.1653 40 1 2.0486 1.5045 -2.1533 41 1 2.1323 3.1012 -1.3714 42 1 -1.2778 2.5655 -2.8681 43 1 0.3018 3.2952 -3.2432 44 1 -0.7628 2.1774 -6.5410 45 1 1.6905 3.8170 0.0962 46 1 0.9887 6.9331 1.4293 47 1 0.7979 5.7993 2.7881 48 1 3.1616 6.0784 3.3539 49 1 4.3715 5.7561 2.0890 50 1 3.3526 7.2129 1.9956 51 1 -4.7694 3.5064 -1.0736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165822922.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:06 Heat of formation + Delta-G solvation = 102.868286 kcal Electronic energy + Delta-G solvation = -33277.321101 eV Core-core repulsion = 29215.227775 eV Total energy + Delta-G solvation = -4062.093325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.48605 -39.75580 -38.48206 -37.28207 -35.70477 -33.38583 -32.46511 -31.80233 -31.32798 -29.97741 -28.38267 -27.73560 -26.64459 -25.98887 -25.03480 -23.29200 -22.72390 -21.82345 -21.60132 -20.75319 -19.59837 -18.15219 -17.62736 -17.07424 -16.35560 -16.18383 -16.06509 -15.80429 -15.52464 -15.12167 -14.75525 -14.32795 -14.10494 -13.67382 -13.62689 -13.40144 -13.32077 -12.95286 -12.80429 -12.49726 -12.33696 -12.28226 -12.09181 -11.85498 -11.73133 -11.61019 -11.52824 -11.18718 -11.01843 -10.96212 -10.88582 -10.50679 -10.48232 -10.22751 -10.15645 -10.05835 -10.02731 -9.71642 -9.69531 -9.51713 -9.17423 -8.76561 -8.51439 -7.50666 -6.24633 -4.28634 0.86833 1.19283 2.24105 3.00097 3.01930 3.20419 3.27357 3.28865 3.72962 3.94185 4.10585 4.30353 4.42094 4.77944 4.93086 4.98162 5.07203 5.08048 5.11357 5.12535 5.15292 5.25251 5.27214 5.42257 5.44982 5.56455 5.65083 5.69917 5.74407 5.78604 5.85420 5.93987 6.00714 6.14516 6.15076 6.26019 6.30066 6.42505 6.46148 6.48563 6.53839 6.62818 6.63857 6.74856 6.82263 6.86424 6.97296 7.20033 7.34534 7.56420 7.76882 7.89530 8.03491 8.38335 8.74680 9.35694 10.85872 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.005003 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.131640 B = 5595.096535 C = 7351.868579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.105 4.105 3 C -0.096 4.096 4 C -0.116 4.116 5 C -0.159 4.159 6 C 0.053 3.947 7 N -0.455 5.455 8 C 0.186 3.814 9 C -0.522 4.522 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.887 5.887 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.285 1.285 16 H -0.272 1.272 17 C 0.425 3.575 18 C -0.307 4.307 19 C 0.247 3.753 20 C 0.116 3.884 21 O -0.381 6.381 22 C 0.033 3.967 23 N -0.506 5.506 24 C 0.469 3.531 25 N -0.545 5.545 26 C 0.236 3.764 27 N -0.309 5.309 28 N -0.333 5.333 29 H 0.102 0.898 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.011 0.989 44 H 0.265 0.735 45 H 0.184 0.816 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.043 0.957 49 H 0.090 0.910 50 H 0.044 0.956 51 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.856 4.399 14.127 17.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.115 4.115 4 C -0.154 4.154 5 C -0.216 4.216 6 C -0.072 4.072 7 N -0.165 5.165 8 C 0.066 3.934 9 C -0.560 4.560 10 H 0.089 0.911 11 C -0.139 4.139 12 N -0.525 5.525 13 Si 0.728 3.272 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.196 1.196 17 C 0.203 3.797 18 C -0.338 4.338 19 C 0.088 3.912 20 C 0.039 3.961 21 O -0.299 6.299 22 C -0.063 4.063 23 N -0.229 5.229 24 C 0.108 3.892 25 N -0.280 5.280 26 C -0.066 4.066 27 N -0.138 5.138 28 N -0.117 5.117 29 H 0.121 0.879 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.201 0.799 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.062 0.938 49 H 0.108 0.892 50 H 0.063 0.937 51 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.726 4.039 13.941 16.442 hybrid contribution 0.754 -0.616 -1.085 1.457 sum 8.480 3.424 12.856 15.777 Atomic orbital electron populations 1.22054 0.95232 0.99546 1.04604 1.21418 0.96848 0.95180 1.00826 1.21478 0.95404 0.97232 0.97375 1.21519 0.94825 0.97344 1.01728 1.21929 1.00357 0.96642 1.02721 1.22673 0.83505 1.01412 0.99656 1.58326 1.13669 1.31328 1.13149 1.20321 0.99226 0.98057 0.75831 1.20952 1.43347 1.00049 0.91663 0.91141 1.24940 0.94740 0.96480 0.97728 1.69963 1.40588 1.31160 1.10776 0.86443 0.79253 0.82162 0.79311 1.20425 1.21109 1.19628 1.19661 0.80197 0.86152 0.93737 1.21890 1.02125 1.01100 1.08658 1.20954 0.89204 0.90969 0.90077 1.20931 0.80822 0.96247 0.98103 1.87853 1.14845 1.58414 1.68821 1.22775 0.92208 0.96159 0.95207 1.67358 1.01760 1.28900 1.24857 1.22532 0.91411 0.85767 0.89535 1.70861 1.04592 1.26999 1.25552 1.26229 0.99981 0.89022 0.91371 1.78727 0.90312 1.22792 1.21992 1.48704 1.05926 1.25198 1.31830 0.87938 0.94654 0.94924 0.91939 0.93386 0.90830 0.92081 0.91853 0.93252 0.92401 0.91528 0.87008 0.92260 0.91494 0.97124 0.92496 0.79876 0.89910 0.89914 0.93790 0.89163 0.93734 0.75853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 8.99 37.16 0.33 -2.39 16 2 C -0.11 -1.56 5.39 -26.73 -0.14 -1.70 16 3 C -0.10 -1.34 1.56 -90.62 -0.14 -1.48 16 4 C -0.12 -1.31 5.40 -26.73 -0.14 -1.46 16 5 C -0.16 -1.63 8.69 37.16 0.32 -1.31 16 6 C 0.05 0.89 3.62 -3.82 -0.01 0.88 16 7 N -0.45 -9.01 1.17 -174.08 -0.20 -9.21 16 8 C 0.19 4.53 4.60 -4.97 -0.02 4.50 16 9 C -0.52 -13.34 7.88 -34.44 -0.27 -13.61 16 10 H 0.07 1.75 7.24 -52.49 -0.38 1.37 16 11 C 0.06 1.72 5.45 -17.82 -0.10 1.62 16 12 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 13 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 17 C 0.43 8.21 6.22 -152.99 -0.95 7.26 16 18 C -0.31 -4.96 6.86 -39.23 -0.27 -5.23 16 19 C 0.25 3.77 6.81 -82.29 -0.56 3.21 16 20 C 0.12 1.23 6.48 36.01 0.23 1.46 16 21 O -0.38 -3.76 7.94 -35.23 -0.28 -4.04 16 22 C 0.03 0.21 11.01 101.05 1.11 1.32 16 23 N -0.51 -9.14 10.38 -10.18 -0.11 -9.25 16 24 C 0.47 9.51 8.99 -323.15 -2.91 6.60 16 25 N -0.55 -10.86 11.26 -15.66 -0.18 -11.03 16 26 C 0.24 4.31 12.98 -91.96 -1.19 3.12 16 27 N -0.31 -6.59 10.87 29.26 0.32 -6.28 16 28 N -0.33 -6.94 3.74 -12.98 -0.05 -6.99 16 29 H 0.10 2.11 5.47 -51.93 -0.28 1.83 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.57 8.10 -51.93 -0.42 0.15 16 32 H 0.06 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.07 6.08 -51.93 -0.32 0.76 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.64 6.30 -51.93 -0.33 0.32 16 39 H 0.07 0.67 6.56 -51.93 -0.34 0.33 16 40 H 0.11 2.04 6.42 -51.93 -0.33 1.71 16 41 H 0.06 0.94 4.51 -51.93 -0.23 0.71 16 42 H 0.07 1.82 6.00 -51.93 -0.31 1.51 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.18 2.63 2.40 -52.49 -0.13 2.50 16 46 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 49 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.23 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 393.58 15.07 5.93 5.93 Total: -1.00 -31.21 393.58 -11.27 -42.47 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.70 Total: 4.57 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -4.71 Total: 2.79 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: 0.52 Total: -67.11 kcal Atomic # 8 Polarization: -3.76 SS G_CDS: -0.28 Total: -4.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.21 -11.27 -42.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165822922.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.342 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds