Wall clock time and date at job start Wed Apr 1 2020 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47152 * 2 1 4 4 C 1.52999 * 109.47202 * 173.04070 * 3 2 1 5 5 C 1.52995 * 109.47275 * 185.00077 * 4 3 2 6 6 C 1.53004 * 109.47022 * 293.04113 * 3 2 1 7 7 N 1.46896 * 109.47312 * 66.02863 * 6 3 2 8 8 C 1.46903 * 111.00045 * 200.01289 * 7 6 3 9 9 C 1.50705 * 109.47105 * 63.01891 * 8 7 6 10 10 H 1.08000 * 120.00092 * 5.11494 * 9 8 7 11 11 C 1.37881 * 119.99593 * 185.11341 * 9 8 7 12 12 N 1.31509 * 120.00027 * 354.92764 * 11 9 8 13 13 Si 1.86800 * 119.99544 * 174.92730 * 11 9 8 14 14 H 1.48490 * 109.47381 * 90.00109 * 13 11 9 15 15 H 1.48499 * 109.47038 * 210.00184 * 13 11 9 16 16 H 1.48501 * 109.47014 * 329.99739 * 13 11 9 17 17 C 1.37705 * 111.00540 * 76.05523 * 7 6 3 18 18 C 1.38164 * 120.64082 * 0.02562 * 17 7 6 19 19 C 1.39258 * 119.01484 * 180.02562 * 18 17 7 20 20 C 1.50702 * 119.78058 * 180.02562 * 19 18 17 21 21 O 1.42897 * 109.47662 * 0.02562 * 20 19 18 22 22 C 1.42889 * 114.00402 * 180.02562 * 21 20 19 23 23 N 1.31650 * 120.43391 * 0.02562 * 19 18 17 24 24 C 1.33788 * 121.22668 * 359.97438 * 23 19 18 25 25 N 1.32856 * 132.41329 * 179.97438 * 24 23 19 26 26 C 1.32731 * 109.74050 * 180.02562 * 25 24 23 27 27 N 1.31066 * 109.62489 * 359.97438 * 26 25 24 28 28 N 1.36508 * 120.64695 * 180.02562 * 17 7 6 29 29 H 1.08999 * 109.47079 * 68.16542 * 1 2 3 30 30 H 1.09001 * 109.46852 * 188.16739 * 1 2 3 31 31 H 1.09000 * 109.46687 * 308.16498 * 1 2 3 32 32 H 1.09003 * 109.46862 * 239.99963 * 2 1 3 33 33 H 1.09000 * 109.46953 * 120.00272 * 2 1 3 34 34 H 1.09000 * 109.47199 * 53.03792 * 3 2 1 35 35 H 1.09000 * 109.47046 * 304.99966 * 4 3 2 36 36 H 1.09005 * 109.47116 * 64.99881 * 4 3 2 37 37 H 1.08997 * 109.47098 * 179.97438 * 5 4 3 38 38 H 1.09000 * 109.46993 * 299.99922 * 5 4 3 39 39 H 1.09005 * 109.47209 * 59.99860 * 5 4 3 40 40 H 1.08996 * 109.46889 * 306.01928 * 6 3 2 41 41 H 1.08999 * 109.46649 * 186.02808 * 6 3 2 42 42 H 1.08995 * 109.46991 * 183.02267 * 8 7 6 43 43 H 1.09002 * 109.46551 * 303.02186 * 8 7 6 44 44 H 0.96997 * 119.99620 * 180.02562 * 12 11 9 45 45 H 1.08000 * 120.49433 * 359.97438 * 18 17 7 46 46 H 1.08998 * 109.47193 * 120.02118 * 20 19 18 47 47 H 1.09005 * 109.46967 * 240.01551 * 20 19 18 48 48 H 1.09004 * 109.47309 * 60.00034 * 22 21 20 49 49 H 1.09001 * 109.47185 * 179.97438 * 22 21 20 50 50 H 1.09006 * 109.47523 * 299.99913 * 22 21 20 51 51 H 1.08000 * 125.19165 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5601 1.4460 0.1748 5 6 4.0557 2.8881 0.2998 6 6 1.6778 2.1115 -1.3275 7 7 0.2179 2.2381 -1.4296 8 6 -0.1983 2.4208 -2.8266 9 6 0.1761 1.1994 -3.6261 10 1 0.5980 0.3378 -3.1301 11 6 -0.0200 1.1821 -4.9908 12 7 -0.6246 2.1898 -5.5811 13 14 0.5732 -0.2729 -6.0011 14 1 -0.5048 -1.2908 -6.0833 15 1 0.9266 0.1854 -7.3687 16 1 1.7694 -0.8697 -5.3545 17 6 -0.2451 3.2657 -0.6384 18 6 0.6304 4.0224 0.1166 19 6 0.1254 5.0531 0.9052 20 6 1.0648 5.8897 1.7351 21 8 2.4053 5.4336 1.5426 22 6 3.3806 6.1636 2.2894 23 7 -1.1672 5.3015 0.9304 24 6 -2.0269 4.5774 0.2048 25 7 -3.3469 4.6304 0.0637 26 6 -3.7458 3.6866 -0.7800 27 7 -2.7081 3.0066 -1.2024 28 7 -1.5777 3.5566 -0.5848 29 1 -0.3633 0.3822 -0.9539 30 1 -0.3633 -1.0173 0.1460 31 1 -0.3633 0.6350 0.8080 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5786 1.9910 0.8211 35 1 3.8235 0.8919 1.0757 36 1 4.0264 0.9753 -0.6907 37 1 5.1385 2.8906 0.4248 38 1 3.7923 3.4422 -0.6011 39 1 3.5893 3.3588 1.1653 40 1 2.0486 1.5045 -2.1533 41 1 2.1323 3.1012 -1.3714 42 1 -1.2778 2.5655 -2.8681 43 1 0.3018 3.2952 -3.2432 44 1 -0.7628 2.1774 -6.5410 45 1 1.6905 3.8170 0.0962 46 1 0.9887 6.9331 1.4293 47 1 0.7979 5.7993 2.7881 48 1 3.1616 6.0784 3.3539 49 1 4.3715 5.7561 2.0890 50 1 3.3526 7.2129 1.9956 51 1 -4.7694 3.5064 -1.0736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165822922.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:05 Heat of formation + Delta-G solvation = 89.153145 kcal Electronic energy + Delta-G solvation = -33277.915834 eV Core-core repulsion = 29215.227775 eV Total energy + Delta-G solvation = -4062.688058 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.95361 -41.16466 -39.56178 -38.31675 -36.98304 -35.18488 -34.10107 -32.96612 -32.62424 -31.53780 -29.69110 -28.90949 -28.23449 -26.71640 -26.27653 -24.92209 -24.23673 -23.22396 -22.69891 -22.20958 -20.83672 -19.55129 -19.02050 -18.81408 -17.65472 -17.57979 -16.99730 -16.84483 -16.73329 -16.65133 -16.02067 -15.73447 -15.55549 -15.01926 -14.75172 -14.51644 -14.50686 -14.35356 -14.21299 -13.77324 -13.68992 -13.50440 -13.39376 -13.19951 -13.06060 -12.89589 -12.75490 -12.69500 -12.35775 -12.25579 -12.19374 -12.15028 -11.72185 -11.56137 -11.53890 -11.36044 -11.25985 -11.21706 -10.99125 -10.85609 -10.64771 -10.45351 -10.17480 -9.02046 -8.29256 -6.39499 -0.54016 -0.24620 0.80314 1.39742 1.40591 1.51125 1.56235 1.93711 2.25533 2.35466 2.57415 3.05945 3.06375 3.10742 3.52660 3.76891 3.84655 3.87633 4.05677 4.15077 4.26700 4.31378 4.41204 4.43119 4.50100 4.54709 4.63646 4.67111 4.70947 4.72519 4.75513 4.77542 4.84481 4.90732 5.02724 5.05500 5.08861 5.14631 5.16767 5.20952 5.30490 5.32710 5.34119 5.36514 5.50052 5.54430 5.66477 5.75267 5.81268 5.88594 6.14452 6.18006 6.46765 6.71027 6.90091 7.29043 8.82433 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008884 B = 0.005003 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3151.131640 B = 5595.096535 C = 7351.868579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.085 4.085 4 C -0.111 4.111 5 C -0.157 4.157 6 C 0.055 3.945 7 N -0.456 5.456 8 C 0.207 3.793 9 C -0.522 4.522 10 H 0.075 0.925 11 C 0.012 3.988 12 N -0.929 5.929 13 Si 0.968 3.032 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.255 1.255 17 C 0.394 3.606 18 C -0.288 4.288 19 C 0.251 3.749 20 C 0.121 3.879 21 O -0.398 6.398 22 C 0.027 3.973 23 N -0.511 5.511 24 C 0.450 3.550 25 N -0.562 5.562 26 C 0.243 3.757 27 N -0.355 5.355 28 N -0.343 5.343 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.022 0.978 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.066 0.934 42 H 0.034 0.966 43 H -0.023 1.023 44 H 0.265 0.735 45 H 0.204 0.796 46 H 0.102 0.898 47 H 0.108 0.892 48 H 0.058 0.942 49 H 0.102 0.898 50 H 0.054 0.946 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.448 4.261 16.247 20.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.139 4.139 3 C -0.104 4.104 4 C -0.149 4.149 5 C -0.214 4.214 6 C -0.070 4.070 7 N -0.167 5.167 8 C 0.085 3.915 9 C -0.560 4.560 10 H 0.093 0.907 11 C -0.188 4.188 12 N -0.568 5.568 13 Si 0.792 3.208 14 H -0.204 1.204 15 H -0.209 1.209 16 H -0.179 1.179 17 C 0.173 3.827 18 C -0.318 4.318 19 C 0.092 3.908 20 C 0.044 3.956 21 O -0.317 6.317 22 C -0.069 4.069 23 N -0.235 5.235 24 C 0.090 3.910 25 N -0.297 5.297 26 C -0.059 4.059 27 N -0.185 5.185 28 N -0.127 5.127 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.052 0.948 43 H -0.005 1.005 44 H 0.074 0.926 45 H 0.220 0.780 46 H 0.120 0.880 47 H 0.126 0.874 48 H 0.077 0.923 49 H 0.120 0.880 50 H 0.072 0.928 51 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 10.357 3.905 16.103 19.541 hybrid contribution -0.022 -0.461 -1.625 1.689 sum 10.335 3.444 14.478 18.119 Atomic orbital electron populations 1.21928 0.97315 0.99293 1.02184 1.21412 0.94777 0.95975 1.01768 1.21419 0.97566 0.96220 0.95188 1.21509 0.92185 0.98519 1.02682 1.21905 1.01675 0.95576 1.02217 1.22759 0.81679 1.01749 1.00840 1.58204 1.15319 1.32442 1.10712 1.19750 0.96817 0.96341 0.78610 1.21221 1.42402 1.00368 0.91990 0.90682 1.25832 0.94787 0.99138 0.99015 1.70105 1.42283 1.33445 1.10973 0.85396 0.79105 0.78646 0.77618 1.20441 1.20914 1.17919 1.20066 0.80308 0.87320 0.95004 1.22250 1.02494 0.99991 1.07107 1.21813 0.89006 0.90595 0.89345 1.21058 0.80504 0.95803 0.98207 1.87815 1.14699 1.59337 1.69851 1.23005 0.91647 0.96506 0.95720 1.67511 1.02656 1.28629 1.24675 1.22985 0.92067 0.86074 0.89911 1.70862 1.04754 1.27749 1.26363 1.27028 1.01054 0.87732 0.90037 1.78641 0.91279 1.24758 1.23819 1.48775 1.06312 1.25505 1.32079 0.91427 0.94108 0.95874 0.92500 0.90755 0.91098 0.90097 0.91847 0.91307 0.93703 0.91086 0.88835 0.91648 0.94756 1.00472 0.92577 0.77971 0.87999 0.87442 0.92334 0.88000 0.92756 0.71891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.23 8.99 71.98 0.65 -4.59 16 2 C -0.10 -2.88 5.39 30.60 0.16 -2.72 16 3 C -0.09 -2.25 1.56 -10.79 -0.02 -2.27 16 4 C -0.11 -2.19 5.40 30.59 0.17 -2.02 16 5 C -0.16 -2.72 8.69 71.98 0.63 -2.10 16 6 C 0.05 1.86 3.62 86.31 0.31 2.17 16 7 N -0.46 -18.85 1.17 -704.67 -0.82 -19.68 16 8 C 0.21 10.71 4.60 85.56 0.39 11.10 16 9 C -0.52 -27.70 7.88 25.60 0.20 -27.50 16 10 H 0.08 3.83 7.24 -2.91 -0.02 3.81 16 11 C 0.01 0.64 5.45 84.66 0.46 1.10 16 12 N -0.93 -54.66 13.29 21.45 0.29 -54.37 16 13 Si 0.97 42.48 29.54 68.60 2.03 44.50 16 14 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 16 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 17 C 0.39 15.71 6.22 131.99 0.82 16.53 16 18 C -0.29 -9.20 6.86 22.50 0.15 -9.05 16 19 C 0.25 7.33 6.81 42.83 0.29 7.62 16 20 C 0.12 2.19 6.48 71.24 0.46 2.66 16 21 O -0.40 -6.53 7.94 -148.98 -1.18 -7.71 16 22 C 0.03 0.24 11.01 113.37 1.25 1.49 16 23 N -0.51 -18.25 10.38 -186.12 -1.93 -20.19 16 24 C 0.45 18.67 8.99 261.61 2.35 21.03 16 25 N -0.56 -22.84 11.26 -203.47 -2.29 -25.13 16 26 C 0.24 9.14 12.98 180.82 2.35 11.49 16 27 N -0.36 -15.97 10.87 -61.35 -0.67 -16.64 16 28 N -0.34 -14.92 3.74 -194.99 -0.73 -15.65 16 29 H 0.07 2.89 5.47 -2.39 -0.01 2.88 16 30 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.02 0.81 8.10 -2.39 -0.02 0.79 16 32 H 0.06 1.68 8.13 -2.39 -0.02 1.66 16 33 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.07 1.94 6.08 -2.39 -0.01 1.93 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.04 0.90 6.30 -2.39 -0.02 0.88 16 39 H 0.07 1.18 6.56 -2.38 -0.02 1.16 16 40 H 0.09 3.49 6.42 -2.39 -0.02 3.48 16 41 H 0.07 2.08 4.51 -2.39 -0.01 2.07 16 42 H 0.03 2.01 6.00 -2.39 -0.01 1.99 16 43 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 44 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.20 5.54 2.40 -2.91 -0.01 5.53 16 46 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 48 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 49 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 51 H 0.27 6.98 8.06 -2.91 -0.02 6.96 16 Total: -1.00 -72.20 393.58 6.27 -65.93 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.95 Total: 24.00 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 10.63 Total: 24.93 kcal Atomic # 7 Polarization: -145.50 SS G_CDS: -6.16 Total: -151.65 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -1.18 Total: -7.71 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Total: -72.20 6.27 -65.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165822922.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.088 kcal (2) G-P(sol) polarization free energy of solvation -72.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds