Wall clock time and date at job start Wed Apr 1 2020 04:58:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53002 * 109.47136 * 2 1
4 4 C 1.53000 * 109.46724 * 305.14513 * 3 2 1
5 5 C 1.52996 * 109.47260 * 295.12452 * 4 3 2
6 6 C 1.52993 * 109.47473 * 65.14705 * 3 2 1
7 7 N 1.46905 * 109.47162 * 64.99640 * 6 3 2
8 8 C 1.46897 * 110.99756 * 66.05088 * 7 6 3
9 9 C 1.50699 * 109.47212 * 193.95441 * 8 7 6
10 10 H 1.08000 * 119.99921 * 359.97438 * 9 8 7
11 11 C 1.37876 * 120.00451 * 179.97438 * 9 8 7
12 12 N 1.31515 * 119.99792 * 359.97438 * 11 9 8
13 13 Si 1.86794 * 120.00405 * 179.97438 * 11 9 8
14 14 H 1.48500 * 109.47009 * 0.02562 * 13 11 9
15 15 H 1.48505 * 109.47083 * 120.00025 * 13 11 9
16 16 H 1.48493 * 109.47183 * 240.00256 * 13 11 9
17 17 C 1.46902 * 110.99846 * 190.00040 * 7 6 3
18 18 N 1.46503 * 109.46523 * 155.00273 * 17 7 6
19 19 N 1.39297 * 118.65254 * 284.97586 * 18 17 7
20 20 C 1.29916 * 123.39416 * 180.02562 * 19 18 17
21 21 C 1.46102 * 119.78181 * 0.02562 * 20 19 18
22 22 C 1.37227 * 137.26326 * 180.28216 * 21 20 19
23 23 N 1.34693 * 106.81836 * 180.08363 * 22 21 20
24 24 C 1.46500 * 124.07425 * 179.90220 * 23 22 21
25 25 N 1.28634 * 111.85542 * 359.62978 * 23 22 21
26 26 C 1.30960 * 110.78666 * 0.23165 * 25 23 22
27 27 C 1.34928 * 118.65141 * 105.00646 * 18 17 7
28 28 O 1.21780 * 120.65934 * 359.97438 * 27 18 17
29 29 H 1.09001 * 109.47057 * 65.69084 * 1 2 3
30 30 H 1.09000 * 109.47500 * 185.69080 * 1 2 3
31 31 H 1.09001 * 109.47646 * 305.69661 * 1 2 3
32 32 H 1.08996 * 109.47287 * 239.99568 * 2 1 3
33 33 H 1.09002 * 109.47020 * 119.99706 * 2 1 3
34 34 H 1.08998 * 109.46585 * 185.14959 * 3 2 1
35 35 H 1.09000 * 109.47111 * 55.13134 * 4 3 2
36 36 H 1.08999 * 109.46657 * 175.12710 * 4 3 2
37 37 H 1.09005 * 109.47304 * 65.89286 * 5 4 3
38 38 H 1.09006 * 109.47080 * 185.89077 * 5 4 3
39 39 H 1.09003 * 109.47145 * 305.89250 * 5 4 3
40 40 H 1.09005 * 109.46884 * 305.00181 * 6 3 2
41 41 H 1.08995 * 109.47542 * 184.99917 * 6 3 2
42 42 H 1.09004 * 109.47221 * 313.95007 * 8 7 6
43 43 H 1.08996 * 109.47429 * 73.95068 * 8 7 6
44 44 H 0.96999 * 120.00296 * 179.97438 * 12 11 9
45 45 H 1.08993 * 109.47254 * 35.00628 * 17 7 6
46 46 H 1.09003 * 109.47072 * 275.00225 * 17 7 6
47 47 H 1.07999 * 120.10842 * 179.97438 * 20 19 18
48 48 H 1.07997 * 126.59404 * 359.94470 * 22 21 20
49 49 H 1.09002 * 109.46945 * 269.72102 * 24 23 22
50 50 H 1.08998 * 109.47403 * 29.71867 * 24 23 22
51 51 H 1.09001 * 109.47121 * 149.72352 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.4271 2.2000 -1.1796
5 6 1.9263 1.5914 -2.4914
6 6 1.6385 2.1255 1.3088
7 7 2.3225 1.4714 2.4324
8 6 3.7744 1.6822 2.3594
9 6 4.4677 0.7348 3.3043
10 1 3.8876 0.0454 3.8999
11 6 5.8424 0.7481 3.4087
12 7 6.5488 1.5873 2.6831
13 14 6.7017 -0.4257 4.5804
14 1 5.6893 -1.2608 5.2753
15 1 7.6245 -1.3020 3.8150
16 1 7.4743 0.3521 5.5820
17 6 1.7868 1.9378 3.7183
18 7 2.0128 0.9140 4.7415
19 7 1.2114 -0.2253 4.7350
20 6 1.3314 -1.1889 5.5980
21 6 2.3491 -1.1048 6.6429
22 6 2.7821 -1.8754 7.6926
23 7 3.7869 -1.2003 8.2832
24 6 4.5242 -1.6837 9.4532
25 7 4.0250 -0.0826 7.6927
26 6 3.2145 0.0891 6.6785
27 6 2.9884 1.1137 5.6520
28 8 3.6673 2.1242 5.6233
29 1 -0.3633 0.4231 -0.9366
30 1 -0.3634 -1.0226 0.1019
31 1 -0.3634 0.5996 0.8346
32 1 1.8933 -0.5139 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 3.1261 1.4438 -0.0922
35 1 0.3406 2.1251 -1.1344
36 1 1.7213 3.2484 -1.1303
37 1 1.5441 0.5752 -2.5892
38 1 1.5743 2.1941 -3.3288
39 1 3.0161 1.5711 -2.4911
40 1 0.5598 2.0458 1.4441
41 1 1.9234 3.1769 1.2724
42 1 4.1179 1.4963 1.3417
43 1 4.0070 2.7096 2.6394
44 1 7.5160 1.5970 2.7567
45 1 0.7173 2.1237 3.6204
46 1 2.2907 2.8596 4.0090
47 1 0.6805 -2.0490 5.5437
48 1 2.3908 -2.8371 7.9896
49 1 4.0338 -1.3340 10.3616
50 1 4.5423 -2.7735 9.4465
51 1 5.5452 -1.3032 9.4220
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000186082818.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:21
Heat of formation + Delta-G solvation = 107.662249 kcal
Electronic energy + Delta-G solvation = -32731.488599 eV
Core-core repulsion = 28669.603156 eV
Total energy + Delta-G solvation = -4061.885443 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-42.34236 -39.42294 -37.85165 -36.26109 -35.19879 -33.19591 -32.35373 -31.67826
-30.71488 -30.17103 -28.06595 -27.84024 -26.88552 -24.71841 -23.57557 -23.52682
-22.64487 -22.41432 -20.74185 -20.12748 -18.28542 -18.07054 -17.89537 -16.73194
-16.18922 -16.05749 -15.44058 -15.23874 -15.01038 -14.66372 -14.46289 -14.42595
-13.96152 -13.86134 -13.54099 -13.00478 -12.88699 -12.73045 -12.56292 -12.51013
-12.37758 -11.96616 -11.95410 -11.85063 -11.56480 -11.50018 -10.98649 -10.95933
-10.93514 -10.79597 -10.56707 -10.50209 -10.10536 -10.01531 -9.83924 -9.80387
-9.60743 -9.28609 -9.15207 -9.14285 -8.88361 -8.24399 -7.62260 -7.23818
-5.87296 -3.83000 1.47279 1.91937 2.32051 2.92166 3.02541 3.37431
3.46254 3.47963 4.08280 4.18818 4.53243 4.56032 4.67772 4.89628
4.89904 5.00768 5.16426 5.22620 5.28590 5.35851 5.43398 5.46911
5.53055 5.61781 5.72176 5.77822 5.82921 5.98017 6.03273 6.06214
6.11077 6.14081 6.18132 6.26867 6.28788 6.33968 6.42083 6.46762
6.66514 6.67671 6.75797 6.79266 6.84592 6.96661 7.11415 7.35760
7.46195 7.91423 7.99059 8.14196 8.26356 8.61148 8.64201 8.84801
9.17113 9.79052 11.24622
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.004149 C = 0.003526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.615978 B = 6747.707809 C = 7938.291050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.108 4.108
3 C -0.084 4.084
4 C -0.120 4.120
5 C -0.149 4.149
6 C 0.068 3.932
7 N -0.543 5.543
8 C 0.193 3.807
9 C -0.487 4.487
10 H 0.058 0.942
11 C 0.066 3.934
12 N -0.896 5.896
13 Si 0.883 3.117
14 H -0.278 1.278
15 H -0.289 1.289
16 H -0.284 1.284
17 C 0.312 3.688
18 N -0.407 5.407
19 N -0.218 5.218
20 C 0.130 3.870
21 C -0.210 4.210
22 C 0.027 3.973
23 N -0.289 5.289
24 C 0.088 3.912
25 N -0.228 5.228
26 C 0.010 3.990
27 C 0.593 3.407
28 O -0.486 6.486
29 H 0.044 0.956
30 H 0.043 0.957
31 H 0.056 0.944
32 H 0.047 0.953
33 H 0.081 0.919
34 H 0.079 0.921
35 H 0.061 0.939
36 H 0.055 0.945
37 H 0.054 0.946
38 H 0.045 0.955
39 H 0.054 0.946
40 H 0.065 0.935
41 H 0.023 0.977
42 H 0.035 0.965
43 H -0.006 1.006
44 H 0.257 0.743
45 H 0.077 0.923
46 H 0.076 0.924
47 H 0.184 0.816
48 H 0.191 0.809
49 H 0.086 0.914
50 H 0.096 0.904
51 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.032 -7.749 5.717 16.204
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.146 4.146
3 C -0.103 4.103
4 C -0.158 4.158
5 C -0.207 4.207
6 C -0.060 4.060
7 N -0.269 5.269
8 C 0.068 3.932
9 C -0.526 4.526
10 H 0.076 0.924
11 C -0.135 4.135
12 N -0.537 5.537
13 Si 0.712 3.288
14 H -0.203 1.203
15 H -0.216 1.216
16 H -0.210 1.210
17 C 0.101 3.899
18 N -0.228 5.228
19 N -0.026 5.026
20 C -0.079 4.079
21 C -0.223 4.223
22 C -0.120 4.120
23 N -0.076 5.076
24 C -0.053 4.053
25 N -0.060 5.060
26 C -0.156 4.156
27 C 0.378 3.622
28 O -0.354 6.354
29 H 0.063 0.937
30 H 0.062 0.938
31 H 0.075 0.925
32 H 0.066 0.934
33 H 0.099 0.901
34 H 0.097 0.903
35 H 0.080 0.920
36 H 0.073 0.927
37 H 0.073 0.927
38 H 0.064 0.936
39 H 0.073 0.927
40 H 0.083 0.917
41 H 0.041 0.959
42 H 0.053 0.947
43 H 0.012 0.988
44 H 0.066 0.934
45 H 0.095 0.905
46 H 0.094 0.906
47 H 0.200 0.800
48 H 0.208 0.792
49 H 0.104 0.896
50 H 0.115 0.885
51 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -12.001 -6.669 5.535 14.803
hybrid contribution 1.028 -0.689 1.054 1.626
sum -10.973 -7.358 6.589 14.763
Atomic orbital electron populations
1.21814 0.97037 1.00673 1.00831 1.21371 0.94823 0.96291 1.02077
1.21215 1.01162 0.95177 0.92704 1.21597 1.00372 0.99182 0.94663
1.21765 1.01389 1.00636 0.96863 1.22003 0.97862 0.95038 0.91132
1.61790 1.08004 1.57397 0.99705 1.19863 0.79839 0.95544 0.97910
1.21105 0.90811 1.18416 1.22294 0.92440 1.24775 0.97541 0.95562
0.95605 1.69935 1.05922 1.37021 1.40827 0.86643 0.79732 0.81106
0.81323 1.20251 1.21561 1.21036 1.21665 0.98377 0.86479 0.83415
1.48660 1.29784 1.16745 1.27650 1.74060 1.14378 0.94674 1.19479
1.23784 0.96355 0.97500 0.90241 1.21340 1.03012 0.97139 1.00843
1.22516 0.93595 0.99713 0.96223 1.45528 1.25404 1.12962 1.23661
1.22174 0.98123 1.00705 0.84268 1.73037 1.21516 1.02855 1.08576
1.23003 0.96989 0.97999 0.97641 1.16698 0.80110 0.85235 0.80116
1.90889 1.43333 1.28675 1.72487 0.93682 0.93807 0.92507 0.93445
0.90059 0.90294 0.92011 0.92660 0.92727 0.93577 0.92733 0.91682
0.95897 0.94669 0.98782 0.93374 0.90460 0.90607 0.79984 0.79202
0.89594 0.88506 0.88494
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.94 9.11 37.16 0.34 -1.60 16
2 C -0.11 -1.72 5.28 -26.73 -0.14 -1.86 16
3 C -0.08 -1.38 2.11 -90.62 -0.19 -1.58 16
4 C -0.12 -1.62 5.07 -26.73 -0.14 -1.76 16
5 C -0.15 -1.87 9.52 37.16 0.35 -1.52 16
6 C 0.07 1.19 4.18 -3.83 -0.02 1.17 16
7 N -0.54 -11.56 3.97 -239.98 -0.95 -12.51 16
8 C 0.19 5.12 4.58 -4.98 -0.02 5.10 16
9 C -0.49 -14.25 6.39 -34.44 -0.22 -14.47 16
10 H 0.06 1.70 5.19 -52.49 -0.27 1.43 16
11 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16
12 N -0.90 -28.34 13.29 55.43 0.74 -27.61 16
13 Si 0.88 24.31 29.54 -169.99 -5.02 19.29 16
14 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16
15 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16
16 H -0.28 -7.95 7.11 56.52 0.40 -7.55 16
17 C 0.31 6.38 5.60 -63.31 -0.35 6.02 16
18 N -0.41 -8.70 2.59 -64.54 -0.17 -8.87 16
19 N -0.22 -3.99 11.31 31.86 0.36 -3.63 16
20 C 0.13 1.95 11.62 -15.21 -0.18 1.77 16
21 C -0.21 -3.49 6.68 -103.34 -0.69 -4.19 16
22 C 0.03 0.34 11.50 -16.66 -0.19 0.14 16
23 N -0.29 -4.19 3.67 -67.71 -0.25 -4.44 16
24 C 0.09 0.73 11.24 59.85 0.67 1.40 16
25 N -0.23 -4.64 11.87 34.37 0.41 -4.24 16
26 C 0.01 0.21 7.76 -81.02 -0.63 -0.42 16
27 C 0.59 14.28 5.02 -12.74 -0.06 14.22 16
28 O -0.49 -13.46 15.39 5.12 0.08 -13.38 16
29 H 0.04 0.53 6.58 -51.93 -0.34 0.19 16
30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
31 H 0.06 0.77 6.23 -51.93 -0.32 0.45 16
32 H 0.05 0.72 6.96 -51.93 -0.36 0.36 16
33 H 0.08 1.55 7.62 -51.93 -0.40 1.16 16
34 H 0.08 1.56 6.12 -51.93 -0.32 1.24 16
35 H 0.06 0.76 6.19 -51.93 -0.32 0.44 16
36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
37 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16
38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16
40 H 0.06 1.00 5.90 -51.93 -0.31 0.69 16
41 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16
42 H 0.04 0.99 5.91 -51.93 -0.31 0.68 16
43 H -0.01 -0.16 7.82 -51.93 -0.41 -0.57 16
44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16
45 H 0.08 1.31 7.64 -51.93 -0.40 0.92 16
46 H 0.08 1.70 6.52 -51.93 -0.34 1.36 16
47 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16
48 H 0.19 1.29 8.06 -52.49 -0.42 0.86 16
49 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16
50 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16
51 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16
LS Contribution 399.23 15.07 6.02 6.02
Total: -1.00 -39.25 399.23 -8.17 -47.42
By element:
Atomic # 1 Polarization: 5.41 SS G_CDS: -7.81 Total: -2.41 kcal
Atomic # 6 Polarization: 5.93 SS G_CDS: -1.57 Total: 4.36 kcal
Atomic # 7 Polarization: -61.43 SS G_CDS: 0.14 Total: -61.30 kcal
Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal
Atomic # 14 Polarization: 24.31 SS G_CDS: -5.02 Total: 19.29 kcal
Total LS contribution 6.02 Total: 6.02 kcal
Total: -39.25 -8.17 -47.42 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186082818.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 155.077 kcal
(2) G-P(sol) polarization free energy of solvation -39.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.829 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.415 kcal
(6) G-S(sol) free energy of system = (1) + (5) 107.662 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds