Wall clock time and date at job start Wed Apr 1 2020 04:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47136 * 2 1 4 4 C 1.53000 * 109.46724 * 305.14513 * 3 2 1 5 5 C 1.52996 * 109.47260 * 295.12452 * 4 3 2 6 6 C 1.52993 * 109.47473 * 65.14705 * 3 2 1 7 7 N 1.46905 * 109.47162 * 64.99640 * 6 3 2 8 8 C 1.46897 * 110.99756 * 66.05088 * 7 6 3 9 9 C 1.50699 * 109.47212 * 193.95441 * 8 7 6 10 10 H 1.08000 * 119.99921 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00451 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99792 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00405 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47009 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47083 * 120.00025 * 13 11 9 16 16 H 1.48493 * 109.47183 * 240.00256 * 13 11 9 17 17 C 1.46902 * 110.99846 * 190.00040 * 7 6 3 18 18 N 1.46503 * 109.46523 * 155.00273 * 17 7 6 19 19 N 1.39297 * 118.65254 * 284.97586 * 18 17 7 20 20 C 1.29916 * 123.39416 * 180.02562 * 19 18 17 21 21 C 1.46102 * 119.78181 * 0.02562 * 20 19 18 22 22 C 1.37227 * 137.26326 * 180.28216 * 21 20 19 23 23 N 1.34693 * 106.81836 * 180.08363 * 22 21 20 24 24 C 1.46500 * 124.07425 * 179.90220 * 23 22 21 25 25 N 1.28634 * 111.85542 * 359.62978 * 23 22 21 26 26 C 1.30960 * 110.78666 * 0.23165 * 25 23 22 27 27 C 1.34928 * 118.65141 * 105.00646 * 18 17 7 28 28 O 1.21780 * 120.65934 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.47057 * 65.69084 * 1 2 3 30 30 H 1.09000 * 109.47500 * 185.69080 * 1 2 3 31 31 H 1.09001 * 109.47646 * 305.69661 * 1 2 3 32 32 H 1.08996 * 109.47287 * 239.99568 * 2 1 3 33 33 H 1.09002 * 109.47020 * 119.99706 * 2 1 3 34 34 H 1.08998 * 109.46585 * 185.14959 * 3 2 1 35 35 H 1.09000 * 109.47111 * 55.13134 * 4 3 2 36 36 H 1.08999 * 109.46657 * 175.12710 * 4 3 2 37 37 H 1.09005 * 109.47304 * 65.89286 * 5 4 3 38 38 H 1.09006 * 109.47080 * 185.89077 * 5 4 3 39 39 H 1.09003 * 109.47145 * 305.89250 * 5 4 3 40 40 H 1.09005 * 109.46884 * 305.00181 * 6 3 2 41 41 H 1.08995 * 109.47542 * 184.99917 * 6 3 2 42 42 H 1.09004 * 109.47221 * 313.95007 * 8 7 6 43 43 H 1.08996 * 109.47429 * 73.95068 * 8 7 6 44 44 H 0.96999 * 120.00296 * 179.97438 * 12 11 9 45 45 H 1.08993 * 109.47254 * 35.00628 * 17 7 6 46 46 H 1.09003 * 109.47072 * 275.00225 * 17 7 6 47 47 H 1.07999 * 120.10842 * 179.97438 * 20 19 18 48 48 H 1.07997 * 126.59404 * 359.94470 * 22 21 20 49 49 H 1.09002 * 109.46945 * 269.72102 * 24 23 22 50 50 H 1.08998 * 109.47403 * 29.71867 * 24 23 22 51 51 H 1.09001 * 109.47121 * 149.72352 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4271 2.2000 -1.1796 5 6 1.9263 1.5914 -2.4914 6 6 1.6385 2.1255 1.3088 7 7 2.3225 1.4714 2.4324 8 6 3.7744 1.6822 2.3594 9 6 4.4677 0.7348 3.3043 10 1 3.8876 0.0454 3.8999 11 6 5.8424 0.7481 3.4087 12 7 6.5488 1.5873 2.6831 13 14 6.7017 -0.4257 4.5804 14 1 5.6893 -1.2608 5.2753 15 1 7.6245 -1.3020 3.8150 16 1 7.4743 0.3521 5.5820 17 6 1.7868 1.9378 3.7183 18 7 2.0128 0.9140 4.7415 19 7 1.2114 -0.2253 4.7350 20 6 1.3314 -1.1889 5.5980 21 6 2.3491 -1.1048 6.6429 22 6 2.7821 -1.8754 7.6926 23 7 3.7869 -1.2003 8.2832 24 6 4.5242 -1.6837 9.4532 25 7 4.0250 -0.0826 7.6927 26 6 3.2145 0.0891 6.6785 27 6 2.9884 1.1137 5.6520 28 8 3.6673 2.1242 5.6233 29 1 -0.3633 0.4231 -0.9366 30 1 -0.3634 -1.0226 0.1019 31 1 -0.3634 0.5996 0.8346 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.1261 1.4438 -0.0922 35 1 0.3406 2.1251 -1.1344 36 1 1.7213 3.2484 -1.1303 37 1 1.5441 0.5752 -2.5892 38 1 1.5743 2.1941 -3.3288 39 1 3.0161 1.5711 -2.4911 40 1 0.5598 2.0458 1.4441 41 1 1.9234 3.1769 1.2724 42 1 4.1179 1.4963 1.3417 43 1 4.0070 2.7096 2.6394 44 1 7.5160 1.5970 2.7567 45 1 0.7173 2.1237 3.6204 46 1 2.2907 2.8596 4.0090 47 1 0.6805 -2.0490 5.5437 48 1 2.3908 -2.8371 7.9896 49 1 4.0338 -1.3340 10.3616 50 1 4.5423 -2.7735 9.4465 51 1 5.5452 -1.3032 9.4220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186082818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:21 Heat of formation + Delta-G solvation = 107.662249 kcal Electronic energy + Delta-G solvation = -32731.488599 eV Core-core repulsion = 28669.603156 eV Total energy + Delta-G solvation = -4061.885443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.34236 -39.42294 -37.85165 -36.26109 -35.19879 -33.19591 -32.35373 -31.67826 -30.71488 -30.17103 -28.06595 -27.84024 -26.88552 -24.71841 -23.57557 -23.52682 -22.64487 -22.41432 -20.74185 -20.12748 -18.28542 -18.07054 -17.89537 -16.73194 -16.18922 -16.05749 -15.44058 -15.23874 -15.01038 -14.66372 -14.46289 -14.42595 -13.96152 -13.86134 -13.54099 -13.00478 -12.88699 -12.73045 -12.56292 -12.51013 -12.37758 -11.96616 -11.95410 -11.85063 -11.56480 -11.50018 -10.98649 -10.95933 -10.93514 -10.79597 -10.56707 -10.50209 -10.10536 -10.01531 -9.83924 -9.80387 -9.60743 -9.28609 -9.15207 -9.14285 -8.88361 -8.24399 -7.62260 -7.23818 -5.87296 -3.83000 1.47279 1.91937 2.32051 2.92166 3.02541 3.37431 3.46254 3.47963 4.08280 4.18818 4.53243 4.56032 4.67772 4.89628 4.89904 5.00768 5.16426 5.22620 5.28590 5.35851 5.43398 5.46911 5.53055 5.61781 5.72176 5.77822 5.82921 5.98017 6.03273 6.06214 6.11077 6.14081 6.18132 6.26867 6.28788 6.33968 6.42083 6.46762 6.66514 6.67671 6.75797 6.79266 6.84592 6.96661 7.11415 7.35760 7.46195 7.91423 7.99059 8.14196 8.26356 8.61148 8.64201 8.84801 9.17113 9.79052 11.24622 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.004149 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.615978 B = 6747.707809 C = 7938.291050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.084 4.084 4 C -0.120 4.120 5 C -0.149 4.149 6 C 0.068 3.932 7 N -0.543 5.543 8 C 0.193 3.807 9 C -0.487 4.487 10 H 0.058 0.942 11 C 0.066 3.934 12 N -0.896 5.896 13 Si 0.883 3.117 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.284 1.284 17 C 0.312 3.688 18 N -0.407 5.407 19 N -0.218 5.218 20 C 0.130 3.870 21 C -0.210 4.210 22 C 0.027 3.973 23 N -0.289 5.289 24 C 0.088 3.912 25 N -0.228 5.228 26 C 0.010 3.990 27 C 0.593 3.407 28 O -0.486 6.486 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.023 0.977 42 H 0.035 0.965 43 H -0.006 1.006 44 H 0.257 0.743 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.184 0.816 48 H 0.191 0.809 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.032 -7.749 5.717 16.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.103 4.103 4 C -0.158 4.158 5 C -0.207 4.207 6 C -0.060 4.060 7 N -0.269 5.269 8 C 0.068 3.932 9 C -0.526 4.526 10 H 0.076 0.924 11 C -0.135 4.135 12 N -0.537 5.537 13 Si 0.712 3.288 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.210 1.210 17 C 0.101 3.899 18 N -0.228 5.228 19 N -0.026 5.026 20 C -0.079 4.079 21 C -0.223 4.223 22 C -0.120 4.120 23 N -0.076 5.076 24 C -0.053 4.053 25 N -0.060 5.060 26 C -0.156 4.156 27 C 0.378 3.622 28 O -0.354 6.354 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.012 0.988 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.200 0.800 48 H 0.208 0.792 49 H 0.104 0.896 50 H 0.115 0.885 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.001 -6.669 5.535 14.803 hybrid contribution 1.028 -0.689 1.054 1.626 sum -10.973 -7.358 6.589 14.763 Atomic orbital electron populations 1.21814 0.97037 1.00673 1.00831 1.21371 0.94823 0.96291 1.02077 1.21215 1.01162 0.95177 0.92704 1.21597 1.00372 0.99182 0.94663 1.21765 1.01389 1.00636 0.96863 1.22003 0.97862 0.95038 0.91132 1.61790 1.08004 1.57397 0.99705 1.19863 0.79839 0.95544 0.97910 1.21105 0.90811 1.18416 1.22294 0.92440 1.24775 0.97541 0.95562 0.95605 1.69935 1.05922 1.37021 1.40827 0.86643 0.79732 0.81106 0.81323 1.20251 1.21561 1.21036 1.21665 0.98377 0.86479 0.83415 1.48660 1.29784 1.16745 1.27650 1.74060 1.14378 0.94674 1.19479 1.23784 0.96355 0.97500 0.90241 1.21340 1.03012 0.97139 1.00843 1.22516 0.93595 0.99713 0.96223 1.45528 1.25404 1.12962 1.23661 1.22174 0.98123 1.00705 0.84268 1.73037 1.21516 1.02855 1.08576 1.23003 0.96989 0.97999 0.97641 1.16698 0.80110 0.85235 0.80116 1.90889 1.43333 1.28675 1.72487 0.93682 0.93807 0.92507 0.93445 0.90059 0.90294 0.92011 0.92660 0.92727 0.93577 0.92733 0.91682 0.95897 0.94669 0.98782 0.93374 0.90460 0.90607 0.79984 0.79202 0.89594 0.88506 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.11 37.16 0.34 -1.60 16 2 C -0.11 -1.72 5.28 -26.73 -0.14 -1.86 16 3 C -0.08 -1.38 2.11 -90.62 -0.19 -1.58 16 4 C -0.12 -1.62 5.07 -26.73 -0.14 -1.76 16 5 C -0.15 -1.87 9.52 37.16 0.35 -1.52 16 6 C 0.07 1.19 4.18 -3.83 -0.02 1.17 16 7 N -0.54 -11.56 3.97 -239.98 -0.95 -12.51 16 8 C 0.19 5.12 4.58 -4.98 -0.02 5.10 16 9 C -0.49 -14.25 6.39 -34.44 -0.22 -14.47 16 10 H 0.06 1.70 5.19 -52.49 -0.27 1.43 16 11 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 12 N -0.90 -28.34 13.29 55.43 0.74 -27.61 16 13 Si 0.88 24.31 29.54 -169.99 -5.02 19.29 16 14 H -0.28 -7.60 7.11 56.52 0.40 -7.20 16 15 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 16 H -0.28 -7.95 7.11 56.52 0.40 -7.55 16 17 C 0.31 6.38 5.60 -63.31 -0.35 6.02 16 18 N -0.41 -8.70 2.59 -64.54 -0.17 -8.87 16 19 N -0.22 -3.99 11.31 31.86 0.36 -3.63 16 20 C 0.13 1.95 11.62 -15.21 -0.18 1.77 16 21 C -0.21 -3.49 6.68 -103.34 -0.69 -4.19 16 22 C 0.03 0.34 11.50 -16.66 -0.19 0.14 16 23 N -0.29 -4.19 3.67 -67.71 -0.25 -4.44 16 24 C 0.09 0.73 11.24 59.85 0.67 1.40 16 25 N -0.23 -4.64 11.87 34.37 0.41 -4.24 16 26 C 0.01 0.21 7.76 -81.02 -0.63 -0.42 16 27 C 0.59 14.28 5.02 -12.74 -0.06 14.22 16 28 O -0.49 -13.46 15.39 5.12 0.08 -13.38 16 29 H 0.04 0.53 6.58 -51.93 -0.34 0.19 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.77 6.23 -51.93 -0.32 0.45 16 32 H 0.05 0.72 6.96 -51.93 -0.36 0.36 16 33 H 0.08 1.55 7.62 -51.93 -0.40 1.16 16 34 H 0.08 1.56 6.12 -51.93 -0.32 1.24 16 35 H 0.06 0.76 6.19 -51.93 -0.32 0.44 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.66 6.98 -51.93 -0.36 0.30 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 1.00 5.90 -51.93 -0.31 0.69 16 41 H 0.02 0.41 8.12 -51.93 -0.42 -0.02 16 42 H 0.04 0.99 5.91 -51.93 -0.31 0.68 16 43 H -0.01 -0.16 7.82 -51.93 -0.41 -0.57 16 44 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 45 H 0.08 1.31 7.64 -51.93 -0.40 0.92 16 46 H 0.08 1.70 6.52 -51.93 -0.34 1.36 16 47 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 48 H 0.19 1.29 8.06 -52.49 -0.42 0.86 16 49 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 0.47 8.12 -51.93 -0.42 0.05 16 51 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 399.23 15.07 6.02 6.02 Total: -1.00 -39.25 399.23 -8.17 -47.42 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -7.81 Total: -2.41 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -1.57 Total: 4.36 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.14 Total: -61.30 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.38 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.02 Total: 19.29 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -39.25 -8.17 -47.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186082818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.077 kcal (2) G-P(sol) polarization free energy of solvation -39.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds