Wall clock time and date at job start Wed Apr 1 2020 04:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47136 * 2 1 4 4 C 1.53000 * 109.46724 * 305.14513 * 3 2 1 5 5 C 1.52996 * 109.47260 * 295.12452 * 4 3 2 6 6 C 1.52993 * 109.47473 * 65.14705 * 3 2 1 7 7 N 1.46905 * 109.47162 * 64.99640 * 6 3 2 8 8 C 1.46897 * 110.99756 * 66.05088 * 7 6 3 9 9 C 1.50699 * 109.47212 * 193.95441 * 8 7 6 10 10 H 1.08000 * 119.99921 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00451 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99792 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00405 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47009 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47083 * 120.00025 * 13 11 9 16 16 H 1.48493 * 109.47183 * 240.00256 * 13 11 9 17 17 C 1.46902 * 110.99846 * 190.00040 * 7 6 3 18 18 N 1.46503 * 109.46523 * 155.00273 * 17 7 6 19 19 N 1.39297 * 118.65254 * 284.97586 * 18 17 7 20 20 C 1.29916 * 123.39416 * 180.02562 * 19 18 17 21 21 C 1.46102 * 119.78181 * 0.02562 * 20 19 18 22 22 C 1.37227 * 137.26326 * 180.28216 * 21 20 19 23 23 N 1.34693 * 106.81836 * 180.08363 * 22 21 20 24 24 C 1.46500 * 124.07425 * 179.90220 * 23 22 21 25 25 N 1.28634 * 111.85542 * 359.62978 * 23 22 21 26 26 C 1.30960 * 110.78666 * 0.23165 * 25 23 22 27 27 C 1.34928 * 118.65141 * 105.00646 * 18 17 7 28 28 O 1.21780 * 120.65934 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.47057 * 65.69084 * 1 2 3 30 30 H 1.09000 * 109.47500 * 185.69080 * 1 2 3 31 31 H 1.09001 * 109.47646 * 305.69661 * 1 2 3 32 32 H 1.08996 * 109.47287 * 239.99568 * 2 1 3 33 33 H 1.09002 * 109.47020 * 119.99706 * 2 1 3 34 34 H 1.08998 * 109.46585 * 185.14959 * 3 2 1 35 35 H 1.09000 * 109.47111 * 55.13134 * 4 3 2 36 36 H 1.08999 * 109.46657 * 175.12710 * 4 3 2 37 37 H 1.09005 * 109.47304 * 65.89286 * 5 4 3 38 38 H 1.09006 * 109.47080 * 185.89077 * 5 4 3 39 39 H 1.09003 * 109.47145 * 305.89250 * 5 4 3 40 40 H 1.09005 * 109.46884 * 305.00181 * 6 3 2 41 41 H 1.08995 * 109.47542 * 184.99917 * 6 3 2 42 42 H 1.09004 * 109.47221 * 313.95007 * 8 7 6 43 43 H 1.08996 * 109.47429 * 73.95068 * 8 7 6 44 44 H 0.96999 * 120.00296 * 179.97438 * 12 11 9 45 45 H 1.08993 * 109.47254 * 35.00628 * 17 7 6 46 46 H 1.09003 * 109.47072 * 275.00225 * 17 7 6 47 47 H 1.07999 * 120.10842 * 179.97438 * 20 19 18 48 48 H 1.07997 * 126.59404 * 359.94470 * 22 21 20 49 49 H 1.09002 * 109.46945 * 269.72102 * 24 23 22 50 50 H 1.08998 * 109.47403 * 29.71867 * 24 23 22 51 51 H 1.09001 * 109.47121 * 149.72352 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4271 2.2000 -1.1796 5 6 1.9263 1.5914 -2.4914 6 6 1.6385 2.1255 1.3088 7 7 2.3225 1.4714 2.4324 8 6 3.7744 1.6822 2.3594 9 6 4.4677 0.7348 3.3043 10 1 3.8876 0.0454 3.8999 11 6 5.8424 0.7481 3.4087 12 7 6.5488 1.5873 2.6831 13 14 6.7017 -0.4257 4.5804 14 1 5.6893 -1.2608 5.2753 15 1 7.6245 -1.3020 3.8150 16 1 7.4743 0.3521 5.5820 17 6 1.7868 1.9378 3.7183 18 7 2.0128 0.9140 4.7415 19 7 1.2114 -0.2253 4.7350 20 6 1.3314 -1.1889 5.5980 21 6 2.3491 -1.1048 6.6429 22 6 2.7821 -1.8754 7.6926 23 7 3.7869 -1.2003 8.2832 24 6 4.5242 -1.6837 9.4532 25 7 4.0250 -0.0826 7.6927 26 6 3.2145 0.0891 6.6785 27 6 2.9884 1.1137 5.6520 28 8 3.6673 2.1242 5.6233 29 1 -0.3633 0.4231 -0.9366 30 1 -0.3634 -1.0226 0.1019 31 1 -0.3634 0.5996 0.8346 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.1261 1.4438 -0.0922 35 1 0.3406 2.1251 -1.1344 36 1 1.7213 3.2484 -1.1303 37 1 1.5441 0.5752 -2.5892 38 1 1.5743 2.1941 -3.3288 39 1 3.0161 1.5711 -2.4911 40 1 0.5598 2.0458 1.4441 41 1 1.9234 3.1769 1.2724 42 1 4.1179 1.4963 1.3417 43 1 4.0070 2.7096 2.6394 44 1 7.5160 1.5970 2.7567 45 1 0.7173 2.1237 3.6204 46 1 2.2907 2.8596 4.0090 47 1 0.6805 -2.0490 5.5437 48 1 2.3908 -2.8371 7.9896 49 1 4.0338 -1.3340 10.3616 50 1 4.5423 -2.7735 9.4465 51 1 5.5452 -1.3032 9.4220 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186082818.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:19 Heat of formation + Delta-G solvation = 78.578085 kcal Electronic energy + Delta-G solvation = -32732.749783 eV Core-core repulsion = 28669.603156 eV Total energy + Delta-G solvation = -4063.146627 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.57205 -41.01953 -39.31411 -37.81107 -36.72902 -34.76760 -34.18497 -33.09894 -31.84114 -31.43279 -29.78288 -29.33337 -28.26986 -26.19661 -25.20235 -24.82949 -24.15475 -23.75146 -22.20660 -21.53063 -19.66622 -19.35111 -19.24592 -18.86058 -17.56634 -17.41017 -16.88938 -16.63759 -16.56365 -16.39310 -16.13637 -15.77056 -15.50034 -15.31285 -14.98082 -14.34524 -14.10533 -13.90458 -13.78889 -13.67091 -13.65691 -13.62624 -13.50045 -13.37461 -13.12843 -12.88764 -12.77605 -12.59018 -12.56114 -12.34508 -12.13292 -12.00585 -11.85607 -11.47010 -11.31969 -11.16587 -11.08450 -11.04511 -10.75880 -10.65697 -10.57255 -10.24522 -9.17617 -9.00929 -8.23388 -6.22760 0.37319 0.40677 1.10323 1.13262 1.20366 1.25030 1.66214 1.79813 2.28714 2.61100 2.87935 3.13477 3.26813 3.38772 3.76388 3.95885 3.99922 4.09351 4.15352 4.30214 4.34747 4.35838 4.39678 4.43196 4.47603 4.55084 4.63994 4.69539 4.72391 4.77809 4.82643 4.88145 4.99415 5.01440 5.07676 5.13478 5.15847 5.21640 5.28066 5.35258 5.41294 5.46239 5.51311 5.52537 5.63442 5.70328 5.83889 5.84323 6.07449 6.22889 6.60638 6.70146 6.85035 7.06763 7.36665 7.41796 8.89351 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.012589 B = 0.004149 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.615978 B = 6747.707809 C = 7938.291050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C -0.081 4.081 4 C -0.113 4.113 5 C -0.147 4.147 6 C 0.066 3.934 7 N -0.536 5.536 8 C 0.215 3.785 9 C -0.475 4.475 10 H 0.056 0.944 11 C 0.008 3.992 12 N -0.933 5.933 13 Si 0.940 3.060 14 H -0.273 1.273 15 H -0.272 1.272 16 H -0.297 1.297 17 C 0.311 3.689 18 N -0.412 5.412 19 N -0.254 5.254 20 C 0.162 3.838 21 C -0.237 4.237 22 C 0.075 3.925 23 N -0.282 5.282 24 C 0.072 3.928 25 N -0.278 5.278 26 C -0.045 4.045 27 C 0.575 3.425 28 O -0.556 6.556 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.051 0.949 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.099 0.901 41 H 0.015 0.985 42 H 0.016 0.984 43 H -0.051 1.051 44 H 0.256 0.744 45 H 0.117 0.883 46 H 0.041 0.959 47 H 0.247 0.753 48 H 0.264 0.736 49 H 0.113 0.887 50 H 0.145 0.855 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.340 -12.226 6.882 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.139 4.139 3 C -0.100 4.100 4 C -0.151 4.151 5 C -0.204 4.204 6 C -0.061 4.061 7 N -0.261 5.261 8 C 0.089 3.911 9 C -0.514 4.514 10 H 0.074 0.926 11 C -0.189 4.189 12 N -0.576 5.576 13 Si 0.768 3.232 14 H -0.198 1.198 15 H -0.197 1.197 16 H -0.224 1.224 17 C 0.100 3.900 18 N -0.231 5.231 19 N -0.061 5.061 20 C -0.045 4.045 21 C -0.250 4.250 22 C -0.073 4.073 23 N -0.068 5.068 24 C -0.065 4.065 25 N -0.112 5.112 26 C -0.208 4.208 27 C 0.364 3.636 28 O -0.431 6.431 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.117 0.883 41 H 0.033 0.967 42 H 0.034 0.966 43 H -0.034 1.034 44 H 0.065 0.935 45 H 0.135 0.865 46 H 0.059 0.941 47 H 0.263 0.737 48 H 0.280 0.720 49 H 0.131 0.869 50 H 0.163 0.837 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.351 -11.192 6.699 20.144 hybrid contribution 1.983 0.542 0.925 2.254 sum -13.368 -10.650 7.624 18.715 Atomic orbital electron populations 1.21735 0.94198 1.01595 1.01876 1.21264 0.97155 0.94984 1.00500 1.21155 0.98691 0.96526 0.93596 1.21552 1.01519 0.98463 0.93539 1.21751 1.00232 1.01486 0.96979 1.22197 0.99253 0.94399 0.90293 1.61775 1.04996 1.57903 1.01446 1.19395 0.83477 0.92295 0.95901 1.21352 0.90867 1.17748 1.21454 0.92593 1.25541 0.98674 0.97372 0.97298 1.70053 1.05997 1.38909 1.42652 0.85747 0.78747 0.79428 0.79324 1.19758 1.19747 1.22374 1.21678 0.99835 0.85735 0.82750 1.48636 1.29592 1.18059 1.26852 1.74165 1.14887 0.94984 1.22046 1.24904 0.94911 0.97264 0.87448 1.21761 1.03641 0.96348 1.03282 1.23635 0.90512 1.00338 0.92827 1.46196 1.25450 1.11327 1.23868 1.22766 0.97217 1.03495 0.83072 1.72943 1.22838 1.05958 1.09424 1.22872 0.99857 0.99593 0.98491 1.17377 0.79897 0.85234 0.81125 1.90823 1.46228 1.31387 1.74639 0.91584 0.92781 0.92594 0.92942 0.93752 0.94790 0.89520 0.92984 0.91920 0.91407 0.94641 0.88260 0.96687 0.96598 1.03385 0.93473 0.86533 0.94065 0.73743 0.72006 0.86871 0.83702 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.11 71.98 0.66 -2.58 16 2 C -0.10 -3.17 5.28 30.59 0.16 -3.01 16 3 C -0.08 -2.74 2.11 -10.80 -0.02 -2.76 16 4 C -0.11 -2.93 5.07 30.59 0.16 -2.77 16 5 C -0.15 -3.51 9.52 71.98 0.69 -2.82 16 6 C 0.07 2.37 4.18 86.30 0.36 2.73 16 7 N -0.54 -24.09 3.97 -913.17 -3.63 -27.72 16 8 C 0.22 12.42 4.58 85.56 0.39 12.81 16 9 C -0.48 -29.51 6.39 25.60 0.16 -29.35 16 10 H 0.06 3.46 5.19 -2.91 -0.02 3.45 16 11 C 0.01 0.51 5.46 84.65 0.46 0.97 16 12 N -0.93 -62.79 13.29 21.45 0.28 -62.50 16 13 Si 0.94 52.23 29.54 68.60 2.03 54.25 16 14 H -0.27 -14.75 7.11 99.48 0.71 -14.04 16 15 H -0.27 -14.16 7.11 99.48 0.71 -13.45 16 16 H -0.30 -16.93 7.11 99.48 0.71 -16.22 16 17 C 0.31 13.48 5.60 170.80 0.96 14.44 16 18 N -0.41 -18.30 2.59 -476.20 -1.24 -19.54 16 19 N -0.25 -8.96 11.31 -53.13 -0.60 -9.56 16 20 C 0.16 4.27 11.62 87.02 1.01 5.29 16 21 C -0.24 -7.14 6.68 -19.03 -0.13 -7.27 16 22 C 0.08 1.46 11.50 84.02 0.97 2.42 16 23 N -0.28 -7.21 3.67 -368.15 -1.35 -8.56 16 24 C 0.07 0.88 11.24 127.77 1.44 2.32 16 25 N -0.28 -11.29 11.87 -45.17 -0.54 -11.83 16 26 C -0.04 -1.96 7.76 43.95 0.34 -1.62 16 27 C 0.58 29.42 5.02 86.45 0.43 29.85 16 28 O -0.56 -33.88 15.39 -4.60 -0.07 -33.95 16 29 H 0.07 1.30 6.58 -2.39 -0.02 1.28 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.33 6.23 -2.39 -0.01 1.32 16 32 H 0.05 1.56 6.96 -2.39 -0.02 1.55 16 33 H 0.04 1.71 7.62 -2.39 -0.02 1.69 16 34 H 0.03 1.45 6.12 -2.39 -0.01 1.44 16 35 H 0.09 1.85 6.19 -2.39 -0.01 1.83 16 36 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.39 6.98 -2.38 -0.02 1.37 16 38 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.10 2.90 5.90 -2.38 -0.01 2.88 16 41 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16 42 H 0.02 0.98 5.91 -2.38 -0.01 0.97 16 43 H -0.05 -3.39 7.82 -2.39 -0.02 -3.41 16 44 H 0.26 16.42 8.31 -92.71 -0.77 15.64 16 45 H 0.12 4.01 7.64 -2.39 -0.02 3.99 16 46 H 0.04 2.06 6.52 -2.39 -0.02 2.05 16 47 H 0.25 3.06 8.06 -2.91 -0.02 3.04 16 48 H 0.26 1.02 8.06 -2.91 -0.02 1.00 16 49 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.14 0.42 8.12 -2.39 -0.02 0.40 16 51 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -100.42 399.23 3.86 -96.56 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 0.94 Total: 4.19 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: 8.03 Total: 18.65 kcal Atomic # 7 Polarization: -132.65 SS G_CDS: -7.06 Total: -139.71 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.07 Total: -33.95 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.03 Total: 54.25 kcal Total: -100.42 3.86 -96.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186082818.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.134 kcal (2) G-P(sol) polarization free energy of solvation -100.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds