Wall clock time and date at job start Wed Apr 1 2020 04:58:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53002 * 109.47136 * 2 1
4 4 C 1.53000 * 109.46724 * 305.14513 * 3 2 1
5 5 C 1.52996 * 109.47260 * 295.12452 * 4 3 2
6 6 C 1.52993 * 109.47473 * 65.14705 * 3 2 1
7 7 N 1.46905 * 109.47162 * 64.99640 * 6 3 2
8 8 C 1.46897 * 110.99756 * 66.05088 * 7 6 3
9 9 C 1.50699 * 109.47212 * 193.95441 * 8 7 6
10 10 H 1.08000 * 119.99921 * 359.97438 * 9 8 7
11 11 C 1.37876 * 120.00451 * 179.97438 * 9 8 7
12 12 N 1.31515 * 119.99792 * 359.97438 * 11 9 8
13 13 Si 1.86794 * 120.00405 * 179.97438 * 11 9 8
14 14 H 1.48500 * 109.47009 * 0.02562 * 13 11 9
15 15 H 1.48505 * 109.47083 * 120.00025 * 13 11 9
16 16 H 1.48493 * 109.47183 * 240.00256 * 13 11 9
17 17 C 1.46902 * 110.99846 * 190.00040 * 7 6 3
18 18 N 1.46503 * 109.46523 * 155.00273 * 17 7 6
19 19 N 1.39297 * 118.65254 * 284.97586 * 18 17 7
20 20 C 1.29916 * 123.39416 * 180.02562 * 19 18 17
21 21 C 1.46102 * 119.78181 * 0.02562 * 20 19 18
22 22 C 1.37227 * 137.26326 * 180.28216 * 21 20 19
23 23 N 1.34693 * 106.81836 * 180.08363 * 22 21 20
24 24 C 1.46500 * 124.07425 * 179.90220 * 23 22 21
25 25 N 1.28634 * 111.85542 * 359.62978 * 23 22 21
26 26 C 1.30960 * 110.78666 * 0.23165 * 25 23 22
27 27 C 1.34928 * 118.65141 * 105.00646 * 18 17 7
28 28 O 1.21780 * 120.65934 * 359.97438 * 27 18 17
29 29 H 1.09001 * 109.47057 * 65.69084 * 1 2 3
30 30 H 1.09000 * 109.47500 * 185.69080 * 1 2 3
31 31 H 1.09001 * 109.47646 * 305.69661 * 1 2 3
32 32 H 1.08996 * 109.47287 * 239.99568 * 2 1 3
33 33 H 1.09002 * 109.47020 * 119.99706 * 2 1 3
34 34 H 1.08998 * 109.46585 * 185.14959 * 3 2 1
35 35 H 1.09000 * 109.47111 * 55.13134 * 4 3 2
36 36 H 1.08999 * 109.46657 * 175.12710 * 4 3 2
37 37 H 1.09005 * 109.47304 * 65.89286 * 5 4 3
38 38 H 1.09006 * 109.47080 * 185.89077 * 5 4 3
39 39 H 1.09003 * 109.47145 * 305.89250 * 5 4 3
40 40 H 1.09005 * 109.46884 * 305.00181 * 6 3 2
41 41 H 1.08995 * 109.47542 * 184.99917 * 6 3 2
42 42 H 1.09004 * 109.47221 * 313.95007 * 8 7 6
43 43 H 1.08996 * 109.47429 * 73.95068 * 8 7 6
44 44 H 0.96999 * 120.00296 * 179.97438 * 12 11 9
45 45 H 1.08993 * 109.47254 * 35.00628 * 17 7 6
46 46 H 1.09003 * 109.47072 * 275.00225 * 17 7 6
47 47 H 1.07999 * 120.10842 * 179.97438 * 20 19 18
48 48 H 1.07997 * 126.59404 * 359.94470 * 22 21 20
49 49 H 1.09002 * 109.46945 * 269.72102 * 24 23 22
50 50 H 1.08998 * 109.47403 * 29.71867 * 24 23 22
51 51 H 1.09001 * 109.47121 * 149.72352 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 1.4271 2.2000 -1.1796
5 6 1.9263 1.5914 -2.4914
6 6 1.6385 2.1255 1.3088
7 7 2.3225 1.4714 2.4324
8 6 3.7744 1.6822 2.3594
9 6 4.4677 0.7348 3.3043
10 1 3.8876 0.0454 3.8999
11 6 5.8424 0.7481 3.4087
12 7 6.5488 1.5873 2.6831
13 14 6.7017 -0.4257 4.5804
14 1 5.6893 -1.2608 5.2753
15 1 7.6245 -1.3020 3.8150
16 1 7.4743 0.3521 5.5820
17 6 1.7868 1.9378 3.7183
18 7 2.0128 0.9140 4.7415
19 7 1.2114 -0.2253 4.7350
20 6 1.3314 -1.1889 5.5980
21 6 2.3491 -1.1048 6.6429
22 6 2.7821 -1.8754 7.6926
23 7 3.7869 -1.2003 8.2832
24 6 4.5242 -1.6837 9.4532
25 7 4.0250 -0.0826 7.6927
26 6 3.2145 0.0891 6.6785
27 6 2.9884 1.1137 5.6520
28 8 3.6673 2.1242 5.6233
29 1 -0.3633 0.4231 -0.9366
30 1 -0.3634 -1.0226 0.1019
31 1 -0.3634 0.5996 0.8346
32 1 1.8933 -0.5139 -0.8899
33 1 1.8933 -0.5138 0.8900
34 1 3.1261 1.4438 -0.0922
35 1 0.3406 2.1251 -1.1344
36 1 1.7213 3.2484 -1.1303
37 1 1.5441 0.5752 -2.5892
38 1 1.5743 2.1941 -3.3288
39 1 3.0161 1.5711 -2.4911
40 1 0.5598 2.0458 1.4441
41 1 1.9234 3.1769 1.2724
42 1 4.1179 1.4963 1.3417
43 1 4.0070 2.7096 2.6394
44 1 7.5160 1.5970 2.7567
45 1 0.7173 2.1237 3.6204
46 1 2.2907 2.8596 4.0090
47 1 0.6805 -2.0490 5.5437
48 1 2.3908 -2.8371 7.9896
49 1 4.0338 -1.3340 10.3616
50 1 4.5423 -2.7735 9.4465
51 1 5.5452 -1.3032 9.4220
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000186082818.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:19
Heat of formation + Delta-G solvation = 78.578085 kcal
Electronic energy + Delta-G solvation = -32732.749783 eV
Core-core repulsion = 28669.603156 eV
Total energy + Delta-G solvation = -4063.146627 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-43.57205 -41.01953 -39.31411 -37.81107 -36.72902 -34.76760 -34.18497 -33.09894
-31.84114 -31.43279 -29.78288 -29.33337 -28.26986 -26.19661 -25.20235 -24.82949
-24.15475 -23.75146 -22.20660 -21.53063 -19.66622 -19.35111 -19.24592 -18.86058
-17.56634 -17.41017 -16.88938 -16.63759 -16.56365 -16.39310 -16.13637 -15.77056
-15.50034 -15.31285 -14.98082 -14.34524 -14.10533 -13.90458 -13.78889 -13.67091
-13.65691 -13.62624 -13.50045 -13.37461 -13.12843 -12.88764 -12.77605 -12.59018
-12.56114 -12.34508 -12.13292 -12.00585 -11.85607 -11.47010 -11.31969 -11.16587
-11.08450 -11.04511 -10.75880 -10.65697 -10.57255 -10.24522 -9.17617 -9.00929
-8.23388 -6.22760 0.37319 0.40677 1.10323 1.13262 1.20366 1.25030
1.66214 1.79813 2.28714 2.61100 2.87935 3.13477 3.26813 3.38772
3.76388 3.95885 3.99922 4.09351 4.15352 4.30214 4.34747 4.35838
4.39678 4.43196 4.47603 4.55084 4.63994 4.69539 4.72391 4.77809
4.82643 4.88145 4.99415 5.01440 5.07676 5.13478 5.15847 5.21640
5.28066 5.35258 5.41294 5.46239 5.51311 5.52537 5.63442 5.70328
5.83889 5.84323 6.07449 6.22889 6.60638 6.70146 6.85035 7.06763
7.36665 7.41796 8.89351
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.012589 B = 0.004149 C = 0.003526
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2223.615978 B = 6747.707809 C = 7938.291050
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.101 4.101
3 C -0.081 4.081
4 C -0.113 4.113
5 C -0.147 4.147
6 C 0.066 3.934
7 N -0.536 5.536
8 C 0.215 3.785
9 C -0.475 4.475
10 H 0.056 0.944
11 C 0.008 3.992
12 N -0.933 5.933
13 Si 0.940 3.060
14 H -0.273 1.273
15 H -0.272 1.272
16 H -0.297 1.297
17 C 0.311 3.689
18 N -0.412 5.412
19 N -0.254 5.254
20 C 0.162 3.838
21 C -0.237 4.237
22 C 0.075 3.925
23 N -0.282 5.282
24 C 0.072 3.928
25 N -0.278 5.278
26 C -0.045 4.045
27 C 0.575 3.425
28 O -0.556 6.556
29 H 0.065 0.935
30 H 0.053 0.947
31 H 0.055 0.945
32 H 0.052 0.948
33 H 0.044 0.956
34 H 0.034 0.966
35 H 0.086 0.914
36 H 0.051 0.949
37 H 0.062 0.938
38 H 0.067 0.933
39 H 0.034 0.966
40 H 0.099 0.901
41 H 0.015 0.985
42 H 0.016 0.984
43 H -0.051 1.051
44 H 0.256 0.744
45 H 0.117 0.883
46 H 0.041 0.959
47 H 0.247 0.753
48 H 0.264 0.736
49 H 0.113 0.887
50 H 0.145 0.855
51 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.340 -12.226 6.882 21.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.139 4.139
3 C -0.100 4.100
4 C -0.151 4.151
5 C -0.204 4.204
6 C -0.061 4.061
7 N -0.261 5.261
8 C 0.089 3.911
9 C -0.514 4.514
10 H 0.074 0.926
11 C -0.189 4.189
12 N -0.576 5.576
13 Si 0.768 3.232
14 H -0.198 1.198
15 H -0.197 1.197
16 H -0.224 1.224
17 C 0.100 3.900
18 N -0.231 5.231
19 N -0.061 5.061
20 C -0.045 4.045
21 C -0.250 4.250
22 C -0.073 4.073
23 N -0.068 5.068
24 C -0.065 4.065
25 N -0.112 5.112
26 C -0.208 4.208
27 C 0.364 3.636
28 O -0.431 6.431
29 H 0.084 0.916
30 H 0.072 0.928
31 H 0.074 0.926
32 H 0.071 0.929
33 H 0.062 0.938
34 H 0.052 0.948
35 H 0.105 0.895
36 H 0.070 0.930
37 H 0.081 0.919
38 H 0.086 0.914
39 H 0.054 0.946
40 H 0.117 0.883
41 H 0.033 0.967
42 H 0.034 0.966
43 H -0.034 1.034
44 H 0.065 0.935
45 H 0.135 0.865
46 H 0.059 0.941
47 H 0.263 0.737
48 H 0.280 0.720
49 H 0.131 0.869
50 H 0.163 0.837
51 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -15.351 -11.192 6.699 20.144
hybrid contribution 1.983 0.542 0.925 2.254
sum -13.368 -10.650 7.624 18.715
Atomic orbital electron populations
1.21735 0.94198 1.01595 1.01876 1.21264 0.97155 0.94984 1.00500
1.21155 0.98691 0.96526 0.93596 1.21552 1.01519 0.98463 0.93539
1.21751 1.00232 1.01486 0.96979 1.22197 0.99253 0.94399 0.90293
1.61775 1.04996 1.57903 1.01446 1.19395 0.83477 0.92295 0.95901
1.21352 0.90867 1.17748 1.21454 0.92593 1.25541 0.98674 0.97372
0.97298 1.70053 1.05997 1.38909 1.42652 0.85747 0.78747 0.79428
0.79324 1.19758 1.19747 1.22374 1.21678 0.99835 0.85735 0.82750
1.48636 1.29592 1.18059 1.26852 1.74165 1.14887 0.94984 1.22046
1.24904 0.94911 0.97264 0.87448 1.21761 1.03641 0.96348 1.03282
1.23635 0.90512 1.00338 0.92827 1.46196 1.25450 1.11327 1.23868
1.22766 0.97217 1.03495 0.83072 1.72943 1.22838 1.05958 1.09424
1.22872 0.99857 0.99593 0.98491 1.17377 0.79897 0.85234 0.81125
1.90823 1.46228 1.31387 1.74639 0.91584 0.92781 0.92594 0.92942
0.93752 0.94790 0.89520 0.92984 0.91920 0.91407 0.94641 0.88260
0.96687 0.96598 1.03385 0.93473 0.86533 0.94065 0.73743 0.72006
0.86871 0.83702 0.89833
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.23 9.11 71.98 0.66 -2.58 16
2 C -0.10 -3.17 5.28 30.59 0.16 -3.01 16
3 C -0.08 -2.74 2.11 -10.80 -0.02 -2.76 16
4 C -0.11 -2.93 5.07 30.59 0.16 -2.77 16
5 C -0.15 -3.51 9.52 71.98 0.69 -2.82 16
6 C 0.07 2.37 4.18 86.30 0.36 2.73 16
7 N -0.54 -24.09 3.97 -913.17 -3.63 -27.72 16
8 C 0.22 12.42 4.58 85.56 0.39 12.81 16
9 C -0.48 -29.51 6.39 25.60 0.16 -29.35 16
10 H 0.06 3.46 5.19 -2.91 -0.02 3.45 16
11 C 0.01 0.51 5.46 84.65 0.46 0.97 16
12 N -0.93 -62.79 13.29 21.45 0.28 -62.50 16
13 Si 0.94 52.23 29.54 68.60 2.03 54.25 16
14 H -0.27 -14.75 7.11 99.48 0.71 -14.04 16
15 H -0.27 -14.16 7.11 99.48 0.71 -13.45 16
16 H -0.30 -16.93 7.11 99.48 0.71 -16.22 16
17 C 0.31 13.48 5.60 170.80 0.96 14.44 16
18 N -0.41 -18.30 2.59 -476.20 -1.24 -19.54 16
19 N -0.25 -8.96 11.31 -53.13 -0.60 -9.56 16
20 C 0.16 4.27 11.62 87.02 1.01 5.29 16
21 C -0.24 -7.14 6.68 -19.03 -0.13 -7.27 16
22 C 0.08 1.46 11.50 84.02 0.97 2.42 16
23 N -0.28 -7.21 3.67 -368.15 -1.35 -8.56 16
24 C 0.07 0.88 11.24 127.77 1.44 2.32 16
25 N -0.28 -11.29 11.87 -45.17 -0.54 -11.83 16
26 C -0.04 -1.96 7.76 43.95 0.34 -1.62 16
27 C 0.58 29.42 5.02 86.45 0.43 29.85 16
28 O -0.56 -33.88 15.39 -4.60 -0.07 -33.95 16
29 H 0.07 1.30 6.58 -2.39 -0.02 1.28 16
30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16
31 H 0.06 1.33 6.23 -2.39 -0.01 1.32 16
32 H 0.05 1.56 6.96 -2.39 -0.02 1.55 16
33 H 0.04 1.71 7.62 -2.39 -0.02 1.69 16
34 H 0.03 1.45 6.12 -2.39 -0.01 1.44 16
35 H 0.09 1.85 6.19 -2.39 -0.01 1.83 16
36 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16
37 H 0.06 1.39 6.98 -2.38 -0.02 1.37 16
38 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16
39 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16
40 H 0.10 2.90 5.90 -2.38 -0.01 2.88 16
41 H 0.01 0.56 8.12 -2.39 -0.02 0.54 16
42 H 0.02 0.98 5.91 -2.38 -0.01 0.97 16
43 H -0.05 -3.39 7.82 -2.39 -0.02 -3.41 16
44 H 0.26 16.42 8.31 -92.71 -0.77 15.64 16
45 H 0.12 4.01 7.64 -2.39 -0.02 3.99 16
46 H 0.04 2.06 6.52 -2.39 -0.02 2.05 16
47 H 0.25 3.06 8.06 -2.91 -0.02 3.04 16
48 H 0.26 1.02 8.06 -2.91 -0.02 1.00 16
49 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16
50 H 0.14 0.42 8.12 -2.39 -0.02 0.40 16
51 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
Total: -1.00 -100.42 399.23 3.86 -96.56
By element:
Atomic # 1 Polarization: 3.25 SS G_CDS: 0.94 Total: 4.19 kcal
Atomic # 6 Polarization: 10.62 SS G_CDS: 8.03 Total: 18.65 kcal
Atomic # 7 Polarization: -132.65 SS G_CDS: -7.06 Total: -139.71 kcal
Atomic # 8 Polarization: -33.88 SS G_CDS: -0.07 Total: -33.95 kcal
Atomic # 14 Polarization: 52.23 SS G_CDS: 2.03 Total: 54.25 kcal
Total: -100.42 3.86 -96.56 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000186082818.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 175.134 kcal
(2) G-P(sol) polarization free energy of solvation -100.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.715 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.556 kcal
(6) G-S(sol) free energy of system = (1) + (5) 78.578 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds