Wall clock time and date at job start Wed Apr 1 2020 05:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46630 * 2 1 4 4 C 1.52997 * 109.47039 * 240.00704 * 2 1 3 5 5 N 1.46497 * 109.47442 * 119.99925 * 2 1 3 6 6 N 1.40051 * 125.87105 * 240.00627 * 5 2 1 7 7 C 1.30223 * 109.72118 * 180.02562 * 6 5 2 8 8 C 1.41260 * 108.47114 * 359.97438 * 7 6 5 9 9 C 1.36336 * 125.86679 * 60.00103 * 5 2 1 10 10 N 1.33139 * 134.54303 * 0.30682 * 9 5 2 11 11 C 1.32204 * 120.56879 * 180.16825 * 10 9 5 12 12 N 1.38384 * 118.79244 * 179.75878 * 11 10 9 13 13 C 1.46499 * 120.00090 * 179.72580 * 12 11 10 14 14 C 1.52997 * 109.47012 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.47164 * 300.00256 * 14 13 12 16 16 C 1.52999 * 109.47592 * 59.99962 * 14 13 12 17 17 C 1.52997 * 109.47232 * 180.02562 * 14 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00129 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99861 * 180.02562 * 18 17 14 21 21 N 1.31511 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46938 * 59.99701 * 22 20 18 24 24 H 1.48494 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46872 * 299.99704 * 22 20 18 26 26 N 1.32827 * 122.41673 * 359.47520 * 11 10 9 27 27 C 1.32544 * 121.16275 * 0.26506 * 26 11 10 28 28 O 1.35359 * 120.73391 * 179.97438 * 27 26 11 29 29 H 1.09003 * 109.46915 * 299.99517 * 1 2 3 30 30 H 1.09000 * 109.47773 * 60.00135 * 1 2 3 31 31 H 1.09007 * 109.47099 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47014 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47514 * 299.99920 * 3 2 1 34 34 H 1.09003 * 109.47077 * 60.00582 * 3 2 1 35 35 H 1.09008 * 109.46976 * 299.99191 * 4 2 1 36 36 H 1.08994 * 109.47862 * 59.99303 * 4 2 1 37 37 H 1.09002 * 109.47038 * 180.02562 * 4 2 1 38 38 H 1.07995 * 125.76873 * 180.02562 * 7 6 5 39 39 H 0.97000 * 119.99489 * 359.73392 * 12 11 10 40 40 H 1.09001 * 109.46813 * 60.00313 * 13 12 11 41 41 H 1.09002 * 109.47133 * 299.99884 * 13 12 11 42 42 H 1.09001 * 109.46801 * 180.02562 * 15 14 13 43 43 H 1.09001 * 109.46998 * 299.99705 * 15 14 13 44 44 H 1.09000 * 109.47050 * 59.99996 * 15 14 13 45 45 H 1.09000 * 109.47160 * 300.00333 * 16 14 13 46 46 H 1.09002 * 109.46719 * 60.00054 * 16 14 13 47 47 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 48 48 H 1.09002 * 109.47153 * 299.99992 * 17 14 13 49 49 H 1.09001 * 109.47289 * 60.00075 * 17 14 13 50 50 H 0.96993 * 120.00442 * 180.02562 * 21 20 18 51 51 H 0.96700 * 113.99768 * 90.00121 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 2.8269 -0.1316 2.1938 7 6 3.0736 -1.0233 3.1103 8 6 2.4273 -2.2264 2.7496 9 6 1.7639 -1.9878 1.5294 10 7 1.0753 -2.9788 0.9669 11 6 1.0061 -4.1641 1.5482 12 7 0.2760 -5.1663 0.9337 13 6 0.1866 -6.4915 1.5516 14 6 -0.6719 -7.4059 0.6754 15 6 -2.0750 -6.8111 0.5388 16 6 -0.0341 -7.5310 -0.7097 17 6 -0.7658 -8.7898 1.3210 18 6 -1.6120 -9.6902 0.4583 19 1 -2.0403 -9.3130 -0.4586 20 6 -1.8402 -10.9953 0.8401 21 7 -1.3191 -11.4545 1.9568 22 14 -2.8896 -12.1113 -0.2290 23 1 -2.2710 -12.2336 -1.5734 24 1 -2.9807 -13.4545 0.3976 25 1 -4.2510 -11.5329 -0.3612 26 7 1.6161 -4.4301 2.6977 27 6 2.3279 -3.5055 3.3265 28 8 2.9456 -3.7859 4.4978 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7215 -1.2491 38 1 3.6707 -0.8688 3.9968 39 1 -0.1764 -4.9912 0.0937 40 1 -0.2675 -6.4023 2.5385 41 1 1.1861 -6.9155 1.6484 42 1 -2.6867 -7.4628 -0.0850 43 1 -2.5294 -6.7220 1.5256 44 1 -2.0084 -5.8250 0.0791 45 1 0.0325 -6.5450 -1.1694 46 1 0.9654 -7.9548 -0.6124 47 1 -0.6454 -8.1827 -1.3338 48 1 0.2336 -9.2138 1.4186 49 1 -1.2205 -8.7004 2.3076 50 1 -1.4793 -12.3727 2.2252 51 1 3.8465 -4.1225 4.3967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562890209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:46 Heat of formation + Delta-G solvation = 68.587235 kcal Electronic energy + Delta-G solvation = -31107.161103 eV Core-core repulsion = 27043.581239 eV Total energy + Delta-G solvation = -4063.579863 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.10540 -39.62438 -38.22107 -37.21867 -36.83041 -33.97869 -32.92246 -32.18921 -30.45798 -29.49919 -27.66511 -27.66116 -27.07141 -26.51503 -26.04912 -24.14592 -23.45900 -22.51117 -21.97642 -20.05278 -19.23800 -18.08197 -17.70994 -17.31978 -16.50699 -16.27363 -16.10756 -15.66591 -15.05125 -14.70183 -14.60650 -14.52891 -14.32539 -14.06608 -13.90970 -13.28805 -13.11761 -12.81193 -12.66010 -12.61331 -12.54525 -12.21466 -12.09966 -12.05601 -12.01517 -11.69715 -11.55527 -11.30036 -11.21569 -11.01250 -10.88273 -10.87426 -10.64336 -10.59872 -10.41788 -10.27374 -10.00143 -9.68251 -9.24776 -9.16126 -8.95101 -8.91308 -8.36420 -7.87157 -6.00727 -4.01926 0.61511 1.35232 1.86622 2.34502 2.93328 3.31698 3.36028 3.37098 3.39099 3.82190 3.96978 4.42317 4.45980 4.49530 4.55171 4.60861 4.66804 4.92411 5.02067 5.22931 5.24879 5.34799 5.37794 5.41772 5.46528 5.49279 5.53061 5.60695 5.68449 5.75356 5.77161 5.91590 5.94251 6.17453 6.18151 6.22410 6.27732 6.38591 6.52602 6.62550 6.63790 6.88245 7.03551 7.06409 7.07508 7.16141 7.20763 7.42436 7.59532 7.62911 7.74760 7.97775 8.38696 8.41087 9.02440 9.61139 11.10657 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.002353 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.591916 B =11898.674001 C =13110.150647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.193 3.807 3 C -0.141 4.141 4 C -0.162 4.162 5 N -0.378 5.378 6 N -0.260 5.260 7 C 0.116 3.884 8 C -0.357 4.357 9 C 0.405 3.595 10 N -0.604 5.604 11 C 0.629 3.371 12 N -0.675 5.675 13 C 0.143 3.857 14 C -0.073 4.073 15 C -0.128 4.128 16 C -0.128 4.128 17 C 0.038 3.962 18 C -0.512 4.512 19 H 0.059 0.941 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.889 3.111 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 N -0.593 5.593 27 C 0.486 3.514 28 O -0.473 6.473 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.195 0.805 39 H 0.415 0.585 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.029 0.971 45 H 0.029 0.971 46 H 0.047 0.953 47 H 0.067 0.933 48 H 0.019 0.981 49 H 0.019 0.981 50 H 0.261 0.739 51 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.494 24.080 -1.876 25.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.111 3.889 3 C -0.198 4.198 4 C -0.220 4.220 5 N -0.170 5.170 6 N -0.073 5.073 7 C -0.082 4.082 8 C -0.375 4.375 9 C 0.155 3.845 10 N -0.340 5.340 11 C 0.269 3.731 12 N -0.310 5.310 13 C 0.020 3.980 14 C -0.073 4.073 15 C -0.185 4.185 16 C -0.185 4.185 17 C 0.000 4.000 18 C -0.550 4.550 19 H 0.077 0.923 20 C -0.144 4.144 21 N -0.534 5.534 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.203 1.203 26 N -0.328 5.328 27 C 0.285 3.715 28 O -0.280 6.280 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.212 0.788 39 H 0.254 0.746 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.048 0.952 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.086 0.914 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.070 0.930 51 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 8.603 24.509 -2.407 26.086 hybrid contribution -0.005 -1.104 -0.200 1.122 sum 8.598 23.404 -2.607 25.070 Atomic orbital electron populations 1.22258 0.92897 1.04192 1.02712 1.20660 0.94383 0.92800 0.81066 1.21899 1.02281 0.92881 1.02787 1.22254 1.01640 1.02318 0.95800 1.48680 1.43082 1.05277 1.19942 1.76886 1.10264 1.21640 0.98489 1.23625 0.97654 0.88848 0.98058 1.20007 1.16505 0.98555 1.02402 1.18479 0.90034 0.86801 0.89147 1.66891 1.29556 0.99410 1.38113 1.18666 0.85658 0.84810 0.83936 1.44686 1.51037 1.09519 1.25741 1.21714 1.00751 0.78957 0.96622 1.20940 0.93640 0.97559 0.95172 1.21772 0.97020 0.98184 1.01556 1.21765 1.00759 0.99253 0.96712 1.19077 0.97431 0.87726 0.95743 1.21136 1.30913 0.95651 1.07279 0.92321 1.25003 0.96086 0.98223 0.95130 1.69945 1.44839 1.16159 1.22430 0.86714 0.80980 0.79972 0.80655 1.20341 1.21404 1.20329 1.67455 1.17718 1.36549 1.11066 1.18532 0.85730 0.85342 0.81855 1.84609 1.33186 1.86415 1.23839 0.92196 0.90477 0.90455 0.91445 0.90930 0.91444 0.90424 0.90485 0.92220 0.78841 0.74601 0.91478 0.91521 0.91377 0.93328 0.95191 0.95187 0.93357 0.91383 0.96285 0.96264 0.92977 0.72747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.52 37.16 0.32 -1.18 16 2 C 0.19 1.87 1.21 -131.82 -0.16 1.71 16 3 C -0.14 -1.09 7.97 37.16 0.30 -0.79 16 4 C -0.16 -1.46 8.52 37.16 0.32 -1.14 16 5 N -0.38 -4.59 3.49 -47.77 -0.17 -4.75 16 6 N -0.26 -3.01 11.50 30.82 0.35 -2.66 16 7 C 0.12 1.20 12.05 -17.09 -0.21 0.99 16 8 C -0.36 -4.56 6.19 -106.82 -0.66 -5.22 16 9 C 0.41 5.63 7.11 -156.24 -1.11 4.52 16 10 N -0.60 -8.90 9.38 -13.30 -0.12 -9.02 16 11 C 0.63 9.81 8.41 -322.78 -2.71 7.09 16 12 N -0.67 -10.20 5.11 -62.30 -0.32 -10.51 16 13 C 0.14 2.42 4.51 -4.04 -0.02 2.40 16 14 C -0.07 -1.35 0.54 -154.51 -0.08 -1.43 16 15 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 16 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 17 C 0.04 0.90 4.04 -27.88 -0.11 0.79 16 18 C -0.51 -13.40 7.65 -34.44 -0.26 -13.66 16 19 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 20 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 22 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 N -0.59 -9.27 9.55 -13.73 -0.13 -9.40 16 27 C 0.49 6.40 7.89 -16.33 -0.13 6.27 16 28 O -0.47 -4.79 13.58 -17.77 -0.24 -5.04 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.86 7.43 -51.92 -0.39 0.48 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.85 7.41 -51.92 -0.38 0.46 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.19 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.41 5.84 6.27 -40.82 -0.26 5.59 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.29 6.61 -51.93 -0.34 0.94 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.44 6.86 -51.93 -0.36 0.09 16 45 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 46 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 51 H 0.41 1.96 9.06 45.56 0.41 2.37 16 LS Contribution 407.95 15.07 6.15 6.15 Total: -1.00 -31.91 407.95 -10.16 -42.07 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.37 Total: 4.54 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -4.03 Total: -2.06 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.35 Total: -61.71 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.24 Total: -5.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -31.91 -10.16 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562890209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.656 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds