Wall clock time and date at job start Wed Apr 1 2020 05:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46630 * 2 1 4 4 C 1.52997 * 109.47039 * 240.00704 * 2 1 3 5 5 N 1.46497 * 109.47442 * 119.99925 * 2 1 3 6 6 N 1.40051 * 125.87105 * 240.00627 * 5 2 1 7 7 C 1.30223 * 109.72118 * 180.02562 * 6 5 2 8 8 C 1.41260 * 108.47114 * 359.97438 * 7 6 5 9 9 C 1.36336 * 125.86679 * 60.00103 * 5 2 1 10 10 N 1.33139 * 134.54303 * 0.30682 * 9 5 2 11 11 C 1.32204 * 120.56879 * 180.16825 * 10 9 5 12 12 N 1.38384 * 118.79244 * 179.75878 * 11 10 9 13 13 C 1.46499 * 120.00090 * 179.72580 * 12 11 10 14 14 C 1.52997 * 109.47012 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.47164 * 300.00256 * 14 13 12 16 16 C 1.52999 * 109.47592 * 59.99962 * 14 13 12 17 17 C 1.52997 * 109.47232 * 180.02562 * 14 13 12 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 14 13 19 19 H 1.07998 * 120.00129 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99861 * 180.02562 * 18 17 14 21 21 N 1.31511 * 120.00346 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46938 * 59.99701 * 22 20 18 24 24 H 1.48494 * 109.46914 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.46872 * 299.99704 * 22 20 18 26 26 N 1.32827 * 122.41673 * 359.47520 * 11 10 9 27 27 C 1.32544 * 121.16275 * 0.26506 * 26 11 10 28 28 O 1.35359 * 120.73391 * 179.97438 * 27 26 11 29 29 H 1.09003 * 109.46915 * 299.99517 * 1 2 3 30 30 H 1.09000 * 109.47773 * 60.00135 * 1 2 3 31 31 H 1.09007 * 109.47099 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47014 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47514 * 299.99920 * 3 2 1 34 34 H 1.09003 * 109.47077 * 60.00582 * 3 2 1 35 35 H 1.09008 * 109.46976 * 299.99191 * 4 2 1 36 36 H 1.08994 * 109.47862 * 59.99303 * 4 2 1 37 37 H 1.09002 * 109.47038 * 180.02562 * 4 2 1 38 38 H 1.07995 * 125.76873 * 180.02562 * 7 6 5 39 39 H 0.97000 * 119.99489 * 359.73392 * 12 11 10 40 40 H 1.09001 * 109.46813 * 60.00313 * 13 12 11 41 41 H 1.09002 * 109.47133 * 299.99884 * 13 12 11 42 42 H 1.09001 * 109.46801 * 180.02562 * 15 14 13 43 43 H 1.09001 * 109.46998 * 299.99705 * 15 14 13 44 44 H 1.09000 * 109.47050 * 59.99996 * 15 14 13 45 45 H 1.09000 * 109.47160 * 300.00333 * 16 14 13 46 46 H 1.09002 * 109.46719 * 60.00054 * 16 14 13 47 47 H 1.08993 * 109.47839 * 179.97438 * 16 14 13 48 48 H 1.09002 * 109.47153 * 299.99992 * 17 14 13 49 49 H 1.09001 * 109.47289 * 60.00075 * 17 14 13 50 50 H 0.96993 * 120.00442 * 180.02562 * 21 20 18 51 51 H 0.96700 * 113.99768 * 90.00121 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 2.8269 -0.1316 2.1938 7 6 3.0736 -1.0233 3.1103 8 6 2.4273 -2.2264 2.7496 9 6 1.7639 -1.9878 1.5294 10 7 1.0753 -2.9788 0.9669 11 6 1.0061 -4.1641 1.5482 12 7 0.2760 -5.1663 0.9337 13 6 0.1866 -6.4915 1.5516 14 6 -0.6719 -7.4059 0.6754 15 6 -2.0750 -6.8111 0.5388 16 6 -0.0341 -7.5310 -0.7097 17 6 -0.7658 -8.7898 1.3210 18 6 -1.6120 -9.6902 0.4583 19 1 -2.0403 -9.3130 -0.4586 20 6 -1.8402 -10.9953 0.8401 21 7 -1.3191 -11.4545 1.9568 22 14 -2.8896 -12.1113 -0.2290 23 1 -2.2710 -12.2336 -1.5734 24 1 -2.9807 -13.4545 0.3976 25 1 -4.2510 -11.5329 -0.3612 26 7 1.6161 -4.4301 2.6977 27 6 2.3279 -3.5055 3.3265 28 8 2.9456 -3.7859 4.4978 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1393 37 1 3.1300 -0.7215 -1.2491 38 1 3.6707 -0.8688 3.9968 39 1 -0.1764 -4.9912 0.0937 40 1 -0.2675 -6.4023 2.5385 41 1 1.1861 -6.9155 1.6484 42 1 -2.6867 -7.4628 -0.0850 43 1 -2.5294 -6.7220 1.5256 44 1 -2.0084 -5.8250 0.0791 45 1 0.0325 -6.5450 -1.1694 46 1 0.9654 -7.9548 -0.6124 47 1 -0.6454 -8.1827 -1.3338 48 1 0.2336 -9.2138 1.4186 49 1 -1.2205 -8.7004 2.3076 50 1 -1.4793 -12.3727 2.2252 51 1 3.8465 -4.1225 4.3967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562890209.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:45 Heat of formation + Delta-G solvation = 48.684312 kcal Electronic energy + Delta-G solvation = -31108.024158 eV Core-core repulsion = 27043.581239 eV Total energy + Delta-G solvation = -4064.442919 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.06496 -40.63791 -39.39543 -38.41086 -37.61101 -35.45210 -34.07344 -33.91594 -31.34141 -30.60151 -28.96548 -28.37184 -28.31092 -27.96884 -27.43301 -25.15706 -25.04115 -23.72471 -22.98149 -20.96673 -20.41428 -19.30960 -18.76301 -18.33472 -18.29338 -17.54220 -17.14205 -16.54108 -16.44551 -15.99283 -15.76722 -15.71020 -15.41974 -15.07450 -14.73693 -14.68728 -14.46672 -14.37731 -13.92662 -13.67390 -13.38174 -13.27672 -13.15062 -12.95837 -12.84896 -12.75037 -12.73435 -12.60435 -12.58913 -12.32118 -12.29814 -12.21188 -12.08030 -11.99485 -11.83734 -11.56188 -11.52146 -11.00516 -10.88012 -10.85499 -10.48201 -10.23397 -9.85498 -8.99018 -8.11922 -6.18970 -0.36534 0.30362 0.97078 1.43598 1.45127 1.47301 1.52281 1.86567 2.39062 2.46532 2.75738 3.12544 3.22519 3.47061 3.65968 3.75673 3.78715 3.92153 3.98816 4.03828 4.10776 4.17105 4.24826 4.56555 4.60608 4.68541 4.70323 4.71956 4.75675 4.77392 4.81700 4.85611 4.91940 4.97171 5.09412 5.12341 5.15580 5.19475 5.22372 5.42188 5.44922 5.50937 5.52268 5.54892 5.58922 5.81822 5.86430 5.92438 6.02196 6.33238 6.41691 6.51946 6.59822 6.95455 7.30623 7.48234 9.00179 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.002353 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.591916 B =11898.674001 C =13110.150647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.181 3.819 3 C -0.133 4.133 4 C -0.155 4.155 5 N -0.378 5.378 6 N -0.269 5.269 7 C 0.126 3.874 8 C -0.363 4.363 9 C 0.382 3.618 10 N -0.605 5.605 11 C 0.618 3.382 12 N -0.672 5.672 13 C 0.164 3.836 14 C -0.064 4.064 15 C -0.122 4.122 16 C -0.121 4.121 17 C 0.043 3.957 18 C -0.514 4.514 19 H 0.070 0.930 20 C -0.003 4.003 21 N -0.936 5.936 22 Si 0.955 3.045 23 H -0.268 1.268 24 H -0.291 1.291 25 H -0.269 1.269 26 N -0.624 5.624 27 C 0.489 3.511 28 O -0.472 6.472 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.234 0.766 39 H 0.420 0.580 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.040 0.960 47 H 0.055 0.945 48 H -0.009 1.009 49 H -0.011 1.011 50 H 0.260 0.740 51 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.748 26.454 -3.224 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.100 3.900 3 C -0.190 4.190 4 C -0.214 4.214 5 N -0.169 5.169 6 N -0.082 5.082 7 C -0.071 4.071 8 C -0.380 4.380 9 C 0.132 3.868 10 N -0.341 5.341 11 C 0.258 3.742 12 N -0.309 5.309 13 C 0.040 3.960 14 C -0.065 4.065 15 C -0.179 4.179 16 C -0.178 4.178 17 C 0.005 3.995 18 C -0.552 4.552 19 H 0.088 0.912 20 C -0.200 4.200 21 N -0.577 5.577 22 Si 0.781 3.219 23 H -0.193 1.193 24 H -0.217 1.217 25 H -0.194 1.194 26 N -0.360 5.360 27 C 0.290 3.710 28 O -0.283 6.283 29 H 0.070 0.930 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.250 0.750 39 H 0.260 0.740 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.009 0.991 49 H 0.007 0.993 50 H 0.068 0.932 51 H 0.300 0.700 Dipole moment (debyes) X Y Z Total from point charges 8.896 26.943 -3.765 28.622 hybrid contribution 0.016 -1.716 0.301 1.742 sum 8.912 25.227 -3.464 26.978 Atomic orbital electron populations 1.22221 0.92613 1.02983 1.03654 1.21001 0.94685 0.93804 0.80499 1.21868 1.01905 0.91517 1.03758 1.22210 1.01217 1.01302 0.96628 1.49043 1.42691 1.04705 1.20505 1.76892 1.10482 1.22036 0.98761 1.24240 0.96905 0.87279 0.98679 1.20241 1.16477 0.99133 1.02100 1.18794 0.90540 0.87444 0.89989 1.66863 1.29811 0.99309 1.38146 1.18727 0.86071 0.85146 0.84260 1.44343 1.51894 1.08727 1.25964 1.21232 0.99481 0.79750 0.95539 1.20723 0.95112 0.94884 0.95744 1.21689 0.95644 0.99505 1.01047 1.21677 0.99778 1.00796 0.95539 1.18936 0.95133 0.90815 0.94583 1.21548 1.30242 0.95904 1.07512 0.91231 1.25894 0.97576 1.00117 0.96404 1.70096 1.46735 1.16463 1.24423 0.85648 0.79537 0.77682 0.79063 1.19267 1.21651 1.19355 1.67463 1.18992 1.37803 1.11734 1.18640 0.85169 0.85202 0.81990 1.84570 1.34809 1.86529 1.22384 0.92959 0.87803 0.92653 0.91917 0.88307 0.92099 0.92573 0.87865 0.92746 0.74987 0.74000 0.93067 0.92601 0.92572 0.94322 0.91989 0.91959 0.94097 0.92619 0.99073 0.99273 0.93174 0.70047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.65 8.52 71.98 0.61 -2.04 16 2 C 0.18 3.20 1.21 3.60 0.00 3.21 16 3 C -0.13 -1.74 7.97 71.98 0.57 -1.17 16 4 C -0.16 -2.55 8.52 71.98 0.61 -1.93 16 5 N -0.38 -8.71 3.49 -305.05 -1.07 -9.78 16 6 N -0.27 -5.75 11.50 -56.41 -0.65 -6.40 16 7 C 0.13 2.32 12.05 85.67 1.03 3.36 16 8 C -0.36 -8.81 6.19 -21.29 -0.13 -8.94 16 9 C 0.38 10.36 7.11 134.17 0.95 11.31 16 10 N -0.61 -17.68 9.38 -196.01 -1.84 -19.52 16 11 C 0.62 19.27 8.41 261.48 2.20 21.47 16 12 N -0.67 -20.19 5.11 -351.03 -1.79 -21.98 16 13 C 0.16 5.70 4.51 86.38 0.39 6.09 16 14 C -0.06 -2.41 0.54 -52.18 -0.03 -2.44 16 15 C -0.12 -4.22 8.05 71.98 0.58 -3.64 16 16 C -0.12 -4.12 8.05 71.98 0.58 -3.54 16 17 C 0.04 2.15 4.04 29.85 0.12 2.27 16 18 C -0.51 -27.35 7.65 25.60 0.20 -27.16 16 19 H 0.07 3.49 5.68 -2.91 -0.02 3.47 16 20 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 21 N -0.94 -56.31 13.29 21.45 0.28 -56.03 16 22 Si 0.96 43.49 29.54 68.60 2.03 45.51 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 N -0.62 -19.56 9.55 -310.25 -2.96 -22.52 16 27 C 0.49 12.52 7.89 85.18 0.67 13.19 16 28 O -0.47 -8.89 13.58 -86.50 -1.17 -10.06 16 29 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.20 7.43 -2.38 -0.02 1.18 16 32 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 1.18 7.41 -2.38 -0.02 1.16 16 36 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.23 2.13 8.06 -2.91 -0.02 2.10 16 39 H 0.42 11.36 6.27 -92.71 -0.58 10.78 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 2.08 6.61 -2.39 -0.02 2.06 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 1.75 6.86 -2.39 -0.02 1.73 16 45 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 46 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.05 2.04 6.62 -2.39 -0.02 2.02 16 48 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 49 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 50 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 51 H 0.43 3.37 9.06 -74.06 -0.67 2.70 16 Total: -1.00 -71.20 407.95 1.36 -69.83 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -0.29 Total: 20.60 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 8.83 Total: 10.33 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -8.02 Total: -136.22 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -1.17 Total: -10.06 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.20 1.36 -69.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562890209.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.518 kcal (2) G-P(sol) polarization free energy of solvation -71.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds