Wall clock time and date at job start Wed Apr 1 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47440 * 2 1 4 4 H 1.08997 * 109.46960 * 301.77609 * 3 2 1 5 5 C 1.50702 * 109.47286 * 181.77535 * 3 2 1 6 6 H 1.08000 * 120.00301 * 243.74071 * 5 3 2 7 7 C 1.37880 * 119.99987 * 63.73648 * 5 3 2 8 8 N 1.31515 * 119.99857 * 11.60135 * 7 5 3 9 9 Si 1.86793 * 120.00029 * 191.60716 * 7 5 3 10 10 H 1.48503 * 109.46878 * 269.99605 * 9 7 5 11 11 H 1.48498 * 109.47379 * 29.99743 * 9 7 5 12 12 H 1.48504 * 109.47296 * 150.00014 * 9 7 5 13 13 N 1.46898 * 109.46794 * 61.77963 * 3 2 1 14 14 C 1.46904 * 110.99971 * 205.87389 * 13 3 2 15 15 H 1.09010 * 109.46665 * 325.20688 * 14 13 3 16 16 C 1.52996 * 109.47205 * 85.20008 * 14 13 3 17 17 C 1.50696 * 109.47397 * 205.20748 * 14 13 3 18 18 O 1.21282 * 119.99987 * 343.18832 * 17 14 13 19 19 N 1.34773 * 120.00291 * 163.19258 * 17 14 13 20 20 C 1.47083 * 120.87980 * 5.31663 * 19 17 14 21 21 C 1.53697 * 108.27553 * 128.75718 * 20 19 17 22 22 N 1.46898 * 109.25600 * 54.08699 * 21 20 19 23 23 C 1.38408 * 110.99908 * 172.61029 * 22 21 20 24 24 N 1.32488 * 119.21886 * 124.02851 * 23 22 21 25 25 C 1.32279 * 120.73798 * 179.71772 * 24 23 22 26 26 C 1.38598 * 119.19937 * 0.54086 * 25 24 23 27 27 C 1.38610 * 118.55669 * 359.73472 * 26 25 24 28 28 N 1.32273 * 119.19917 * 359.97438 * 27 26 25 29 29 C 1.46909 * 111.26597 * 296.75047 * 22 21 20 30 30 C 1.47077 * 120.88149 * 185.59806 * 19 17 14 31 31 H 1.09006 * 109.46835 * 304.59673 * 1 2 3 32 32 H 1.08994 * 109.47522 * 64.59563 * 1 2 3 33 33 H 1.09005 * 109.47301 * 184.60164 * 1 2 3 34 34 H 1.09003 * 109.47093 * 240.00015 * 2 1 3 35 35 H 1.09008 * 109.47311 * 120.00661 * 2 1 3 36 36 H 0.97000 * 119.99878 * 357.39499 * 8 7 5 37 37 H 1.00901 * 111.00683 * 81.91824 * 13 3 2 38 38 H 1.09001 * 109.46962 * 62.70176 * 16 14 13 39 39 H 1.09000 * 109.47365 * 182.70078 * 16 14 13 40 40 H 1.08998 * 109.47796 * 302.70399 * 16 14 13 41 41 H 1.09005 * 109.62588 * 248.52571 * 20 19 17 42 42 H 1.08995 * 109.62606 * 9.10308 * 20 19 17 43 43 H 1.08992 * 109.64400 * 294.07763 * 21 20 19 44 44 H 1.08998 * 109.44106 * 173.95989 * 21 20 19 45 45 H 1.08007 * 120.39907 * 180.25538 * 25 24 23 46 46 H 1.07993 * 120.72543 * 179.70898 * 26 25 24 47 47 H 1.08003 * 120.40325 * 179.97438 * 27 26 25 48 48 H 1.08997 * 109.49076 * 303.14864 * 29 22 21 49 49 H 1.09000 * 109.51093 * 183.08043 * 29 22 21 50 50 H 1.08998 * 109.63220 * 350.88994 * 30 19 17 51 51 H 1.09004 * 109.63027 * 111.48032 * 30 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6510 1.9654 -0.8736 5 6 3.5464 1.4427 -0.0440 6 1 4.1108 1.8478 0.7828 7 6 4.2041 0.9254 -1.1399 8 7 3.5344 0.6434 -2.2361 9 14 6.0464 0.6252 -1.0676 10 1 6.7645 1.8427 -1.5227 11 1 6.4421 0.3097 0.3285 12 1 6.3970 -0.5157 -1.9513 13 7 1.5858 2.1224 1.2204 14 6 1.4971 3.5739 1.0123 15 1 2.2919 3.8936 0.3383 16 6 0.1387 3.9191 0.3988 17 6 1.6453 4.2810 2.3348 18 8 1.5035 3.6660 3.3705 19 7 1.9353 5.5967 2.3668 20 6 1.9969 6.3865 1.1275 21 6 1.1156 7.6329 1.3060 22 7 1.5299 8.3495 2.5196 23 6 0.8732 9.5630 2.6276 24 7 0.1751 9.8254 3.7227 25 6 -0.4596 10.9778 3.8600 26 6 -0.3969 11.9103 2.8366 27 6 0.3376 11.6011 1.7025 28 7 0.9535 10.4328 1.6313 29 6 1.3208 7.5291 3.7202 30 6 2.2045 6.2797 3.6413 31 1 -0.3633 0.5835 0.8460 32 1 -0.3634 0.4408 -0.9282 33 1 -0.3634 -1.0244 0.0824 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5140 0.8900 36 1 2.5722 0.7637 -2.2610 37 1 2.1874 1.9051 2.0007 38 1 -0.6545 3.6430 1.0936 39 1 0.0912 4.9898 0.2001 40 1 0.0114 3.3704 -0.5344 41 1 3.0270 6.6870 0.9357 42 1 1.6254 5.7899 0.2944 43 1 0.0718 7.3334 1.3987 44 1 1.2312 8.2859 0.4409 45 1 -1.0237 11.1877 4.7568 46 1 -0.9096 12.8571 2.9206 47 1 0.4062 12.3057 0.8868 48 1 0.2740 7.2311 3.7794 49 1 1.5854 8.1064 4.6062 50 1 1.9703 5.6126 4.4708 51 1 3.2542 6.5702 3.6864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568180723.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:04 Heat of formation + Delta-G solvation = 21.610541 kcal Electronic energy + Delta-G solvation = -31398.759034 eV Core-core repulsion = 27333.142109 eV Total energy + Delta-G solvation = -4065.616926 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.33761 -41.37766 -39.30972 -38.12388 -36.05087 -35.11017 -34.77682 -33.39409 -32.36083 -32.08941 -30.57407 -28.60017 -27.50808 -26.10640 -25.33295 -24.62010 -24.43873 -23.66984 -22.15336 -21.58050 -20.16991 -19.28398 -18.88480 -18.49194 -17.88756 -17.47577 -16.65066 -16.56655 -16.45803 -16.32865 -15.82615 -15.72997 -15.53407 -15.44628 -15.21494 -14.96696 -14.70606 -14.36698 -14.16441 -14.05177 -13.89267 -13.47647 -13.36396 -13.14555 -12.90492 -12.88665 -12.61839 -12.54683 -12.45064 -12.37073 -12.31556 -11.99724 -11.97156 -11.86908 -11.69626 -11.59005 -11.30292 -10.95638 -10.72444 -10.38534 -10.19057 -9.89736 -9.46758 -9.19795 -8.51893 -6.32634 -0.04267 0.18203 1.46491 1.50173 1.57941 1.71857 1.75775 2.09813 2.53762 2.77365 3.15881 3.17097 3.31617 3.45971 3.54163 3.71503 3.81609 3.84728 3.98825 4.03183 4.15163 4.17720 4.28773 4.31076 4.34694 4.40059 4.43668 4.54414 4.56950 4.61854 4.68326 4.71808 4.78134 4.83806 4.85775 4.88651 4.95126 5.19664 5.22309 5.24946 5.31248 5.38686 5.45080 5.48408 5.66348 5.68074 5.94125 5.96870 6.15304 6.23489 6.47534 6.57675 6.68620 7.03157 7.12347 7.46298 8.77004 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016383 B = 0.002445 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.714897 B =11451.499879 C =11939.133652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 C 0.211 3.789 4 H 0.011 0.989 5 C -0.638 4.638 6 H 0.034 0.966 7 C -0.014 4.014 8 N -0.924 5.924 9 Si 1.103 2.897 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.659 5.659 14 C 0.073 3.927 15 H 0.058 0.942 16 C -0.124 4.124 17 C 0.523 3.477 18 O -0.565 6.565 19 N -0.614 5.614 20 C 0.106 3.894 21 C 0.065 3.935 22 N -0.468 5.468 23 C 0.472 3.528 24 N -0.575 5.575 25 C 0.159 3.841 26 C -0.245 4.245 27 C 0.162 3.838 28 N -0.554 5.554 29 C 0.076 3.924 30 C 0.114 3.886 31 H 0.060 0.940 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.037 0.963 35 H 0.034 0.966 36 H 0.264 0.736 37 H 0.330 0.670 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.115 0.885 45 H 0.197 0.803 46 H 0.185 0.815 47 H 0.201 0.799 48 H 0.046 0.954 49 H 0.105 0.895 50 H 0.092 0.908 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.422 25.358 8.432 28.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.142 4.142 3 C 0.102 3.898 4 H 0.029 0.971 5 C -0.677 4.677 6 H 0.052 0.948 7 C -0.215 4.215 8 N -0.561 5.561 9 Si 0.927 3.073 10 H -0.201 1.201 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.290 5.290 14 C -0.040 4.040 15 H 0.076 0.924 16 C -0.182 4.182 17 C 0.311 3.689 18 O -0.443 6.443 19 N -0.348 5.348 20 C -0.017 4.017 21 C -0.061 4.061 22 N -0.188 5.188 23 C 0.116 3.884 24 N -0.295 5.295 25 C -0.007 4.007 26 C -0.268 4.268 27 C -0.005 4.005 28 N -0.273 5.273 29 C -0.052 4.052 30 C -0.008 4.008 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.148 0.852 38 H 0.077 0.923 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.133 0.867 45 H 0.214 0.786 46 H 0.202 0.798 47 H 0.218 0.782 48 H 0.064 0.936 49 H 0.123 0.877 50 H 0.110 0.890 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.894 23.550 7.830 26.043 hybrid contribution -1.152 1.126 0.999 1.896 sum -9.046 24.676 8.829 27.725 Atomic orbital electron populations 1.21588 0.95287 1.00523 1.01169 1.21413 0.95562 0.98120 0.99096 1.19117 0.91792 0.91197 0.87700 0.97105 1.22871 0.93786 1.44889 1.06159 0.94755 1.26856 1.09930 0.93049 0.91655 1.70882 1.10056 1.47660 1.27487 0.83091 0.70893 0.77390 0.75915 1.20063 1.20645 1.20723 1.60771 1.56041 1.04973 1.07249 1.21418 0.99824 0.90045 0.92731 0.92376 1.21744 0.94092 1.01610 1.00782 1.20940 0.74686 0.81910 0.91323 1.90632 1.51489 1.66233 1.35967 1.48220 1.69646 1.08001 1.08917 1.22238 1.01774 0.91147 0.86513 1.22593 0.97212 0.94742 0.91594 1.58360 1.52198 1.02243 1.05985 1.21075 0.88059 0.92478 0.86803 1.68379 1.11302 1.24036 1.25806 1.23721 0.91150 0.86585 0.99235 1.23152 1.04097 1.04032 0.95481 1.23786 0.87663 0.91153 0.97865 1.68023 1.23851 1.05101 1.30323 1.22241 0.98696 0.92486 0.91780 1.21812 1.00075 0.92543 0.86388 0.92068 0.94029 0.93193 0.94427 0.94760 0.92546 0.85228 0.92321 0.89922 0.92078 0.89362 0.87463 0.93436 0.86701 0.78616 0.79786 0.78216 0.93556 0.87665 0.88963 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.03 9.83 71.98 0.71 -4.32 16 2 C -0.10 -4.88 5.32 30.59 0.16 -4.72 16 3 C 0.21 10.37 1.44 44.17 0.06 10.43 16 4 H 0.01 0.58 6.47 -2.39 -0.02 0.56 16 5 C -0.64 -35.03 8.26 25.60 0.21 -34.82 16 6 H 0.03 1.93 7.73 -2.91 -0.02 1.91 16 7 C -0.01 -0.76 5.14 84.66 0.44 -0.33 16 8 N -0.92 -54.13 13.00 21.45 0.28 -53.85 16 9 Si 1.10 50.20 29.92 68.60 2.05 52.25 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 N -0.66 -29.00 5.09 -477.16 -2.43 -31.43 16 14 C 0.07 2.74 1.97 44.17 0.09 2.82 16 15 H 0.06 2.33 6.86 -2.38 -0.02 2.32 16 16 C -0.12 -3.84 9.08 71.98 0.65 -3.18 16 17 C 0.52 18.72 6.86 87.66 0.60 19.32 16 18 O -0.57 -23.88 15.42 -3.04 -0.05 -23.92 16 19 N -0.61 -17.33 3.00 -817.04 -2.45 -19.78 16 20 C 0.11 2.44 5.99 86.50 0.52 2.95 16 21 C 0.07 1.35 5.51 86.54 0.48 1.83 16 22 N -0.47 -10.47 4.69 -706.97 -3.31 -13.79 16 23 C 0.47 10.31 7.17 261.49 1.88 12.19 16 24 N -0.57 -11.31 8.66 -197.98 -1.72 -13.02 16 25 C 0.16 1.89 11.30 84.71 0.96 2.85 16 26 C -0.24 -1.96 10.16 22.44 0.23 -1.74 16 27 C 0.16 1.89 11.30 84.72 0.96 2.84 16 28 N -0.55 -10.91 9.63 -197.98 -1.91 -12.82 16 29 C 0.08 1.68 4.79 86.38 0.41 2.09 16 30 C 0.11 2.84 6.61 86.35 0.57 3.41 16 31 H 0.06 2.38 7.52 -2.38 -0.02 2.36 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.05 1.73 8.14 -2.38 -0.02 1.72 16 34 H 0.04 1.94 6.37 -2.39 -0.02 1.92 16 35 H 0.03 1.64 8.14 -2.38 -0.02 1.63 16 36 H 0.26 15.48 6.12 -92.71 -0.57 14.91 16 37 H 0.33 15.82 7.39 -89.69 -0.66 15.16 16 38 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 1.99 6.06 -2.39 -0.01 1.97 16 40 H 0.06 2.00 7.42 -2.39 -0.02 1.98 16 41 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.11 2.44 4.33 -2.39 -0.01 2.43 16 43 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.11 2.20 7.51 -2.39 -0.02 2.19 16 45 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 46 H 0.18 0.02 8.06 -2.91 -0.02 0.00 16 47 H 0.20 0.86 8.06 -2.91 -0.02 0.84 16 48 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 49 H 0.11 2.19 7.63 -2.39 -0.02 2.17 16 50 H 0.09 2.52 7.04 -2.39 -0.02 2.50 16 51 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -72.46 399.23 -0.13 -72.59 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: 0.48 Total: 32.14 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 8.92 Total: 11.63 kcal Atomic # 7 Polarization: -133.15 SS G_CDS: -11.54 Total: -144.69 kcal Atomic # 8 Polarization: -23.88 SS G_CDS: -0.05 Total: -23.92 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Total: -72.46 -0.13 -72.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568180723.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.205 kcal (2) G-P(sol) polarization free energy of solvation -72.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds