Wall clock time and date at job start Wed Apr 1 2020 05:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35357 * 117.00024 * 2 1 4 4 N 1.32554 * 120.73249 * 359.97438 * 3 2 1 5 5 C 1.32827 * 121.16133 * 179.97438 * 4 3 2 6 6 N 1.38384 * 118.79023 * 179.97438 * 5 4 3 7 7 C 1.46499 * 120.00090 * 0.02562 * 6 5 4 8 8 C 1.53000 * 109.46840 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47233 * 299.99500 * 8 7 6 10 10 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 11 11 C 1.50706 * 109.46735 * 180.02562 * 8 7 6 12 12 H 1.07996 * 119.99928 * 359.97438 * 11 8 7 13 13 C 1.37880 * 119.99611 * 179.97438 * 11 8 7 14 14 N 1.31511 * 120.00327 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 8 16 16 H 1.48506 * 109.46828 * 90.00241 * 15 13 11 17 17 H 1.48494 * 109.47178 * 209.99936 * 15 13 11 18 18 H 1.48500 * 109.47075 * 330.00183 * 15 13 11 19 19 N 1.32207 * 122.41054 * 0.25545 * 5 4 3 20 20 C 1.33124 * 120.57796 * 359.48222 * 19 5 4 21 21 C 1.40655 * 120.73312 * 179.97438 * 3 2 1 22 22 C 1.41260 * 134.59565 * 0.02562 * 21 3 2 23 23 N 1.30222 * 108.47325 * 180.02562 * 22 21 3 24 24 N 1.36335 * 134.54762 * 180.17030 * 20 19 5 25 25 C 1.46497 * 125.86512 * 0.30198 * 24 20 19 26 26 C 1.53005 * 109.47260 * 60.00376 * 25 24 20 27 27 C 1.53009 * 109.46856 * 180.02562 * 25 24 20 28 28 C 1.52999 * 109.47480 * 300.00149 * 25 24 20 29 29 H 1.09005 * 109.46913 * 300.00261 * 1 2 3 30 30 H 1.08995 * 109.46990 * 60.00463 * 1 2 3 31 31 H 1.09000 * 109.47266 * 180.02562 * 1 2 3 32 32 H 0.97000 * 119.99489 * 179.97438 * 6 5 4 33 33 H 1.09002 * 109.47391 * 59.99630 * 7 6 5 34 34 H 1.09001 * 109.46813 * 299.99687 * 7 6 5 35 35 H 1.09000 * 109.46986 * 60.00203 * 9 8 7 36 36 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 38 38 H 1.08992 * 109.47554 * 59.99639 * 10 8 7 39 39 H 1.09004 * 109.47108 * 179.97438 * 10 8 7 40 40 H 1.09000 * 109.46870 * 299.99783 * 10 8 7 41 41 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 42 42 H 1.08001 * 125.76295 * 359.96915 * 22 21 3 43 43 H 1.08995 * 109.46923 * 60.00126 * 26 25 24 44 44 H 1.08997 * 109.46808 * 179.97438 * 26 25 24 45 45 H 1.08998 * 109.46538 * 299.99773 * 26 25 24 46 46 H 1.08998 * 109.47174 * 60.00438 * 27 25 24 47 47 H 1.09003 * 109.46607 * 179.97438 * 27 25 24 48 48 H 1.08991 * 109.47158 * 300.00022 * 27 25 24 49 49 H 1.08997 * 109.47193 * 60.00219 * 28 25 24 50 50 H 1.08997 * 109.47566 * 180.02562 * 28 25 24 51 51 H 1.09006 * 109.47178 * 300.00305 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2060 0.0000 4 7 1.3359 2.3269 -0.0005 5 6 1.9301 3.5148 0.0000 6 7 1.1435 4.6534 -0.0011 7 6 -0.3167 4.5350 -0.0022 8 6 -0.9415 5.9315 -0.0027 9 6 -0.4926 6.6916 1.2470 10 6 -0.4906 6.6917 -1.2515 11 6 -2.4437 5.8097 -0.0032 12 1 -2.9062 4.8338 -0.0037 13 6 -3.2273 6.9441 -0.0032 14 7 -2.6640 8.1325 -0.0021 15 14 -5.0892 6.7931 -0.0045 16 1 -5.5835 6.7524 1.3953 17 1 -5.6801 7.9620 -0.7043 18 1 -5.4841 5.5449 -0.7055 19 7 3.2453 3.6494 -0.0040 20 6 4.0356 2.5781 0.0017 21 6 3.4472 1.2976 0.0005 22 6 4.5023 0.3584 0.0007 23 7 5.6317 1.0067 0.0018 24 7 5.3853 2.3853 0.0028 25 6 6.4028 3.4392 0.0037 26 6 6.2372 4.3071 1.2529 27 6 7.7949 2.8041 0.0042 28 6 6.2393 4.3072 -1.2456 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.5591 5.5299 -0.0004 33 1 -0.6380 3.9938 0.8877 34 1 -0.6365 3.9931 -0.8923 35 1 0.5939 6.7797 1.2479 36 1 -0.9380 7.6863 1.2470 37 1 -0.8138 6.1499 2.1367 38 1 -0.8104 6.1503 -2.1418 39 1 -0.9361 7.6865 -1.2520 40 1 0.5959 6.7798 -1.2506 41 1 -3.2153 8.9306 -0.0017 42 1 4.3912 -0.7158 0.0009 43 1 6.3538 3.6887 2.1429 44 1 6.9946 5.0909 1.2537 45 1 5.2456 4.7595 1.2520 46 1 7.9126 2.1862 -0.8859 47 1 8.5520 3.5883 0.0044 48 1 7.9117 2.1856 0.8940 49 1 5.2477 4.7597 -1.2464 50 1 6.9967 5.0911 -1.2452 51 1 6.3573 3.6890 -2.1356 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596265598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:49 Heat of formation + Delta-G solvation = 66.239375 kcal Electronic energy + Delta-G solvation = -31692.507943 eV Core-core repulsion = 27628.826269 eV Total energy + Delta-G solvation = -4063.681674 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.02615 -40.76722 -39.65130 -38.33521 -37.59668 -35.26059 -34.00390 -32.92438 -31.39432 -30.51791 -28.51085 -28.35612 -28.09253 -27.57571 -27.41806 -26.54071 -24.77510 -23.86867 -22.98341 -21.07137 -20.43643 -19.70501 -18.71814 -18.03071 -17.81734 -17.48477 -17.35736 -16.52962 -16.35310 -16.25844 -15.68626 -15.63662 -15.39593 -15.16546 -14.90055 -14.74518 -14.55170 -14.10227 -14.04190 -13.32823 -13.27223 -13.19705 -13.11054 -13.08639 -12.98209 -12.85531 -12.71667 -12.62794 -12.59712 -12.50690 -12.26775 -12.18485 -12.12973 -12.06563 -11.55964 -11.55258 -11.31913 -11.18581 -10.70928 -10.57589 -10.35928 -10.26288 -9.81440 -8.86813 -8.00289 -6.16371 -0.14276 0.39618 1.00949 1.44586 1.47584 1.52521 1.55206 1.85341 2.03129 2.48154 2.84255 3.02822 3.23917 3.47454 3.56133 3.72545 3.80877 3.93283 3.97902 4.18271 4.42191 4.43944 4.47202 4.50658 4.56377 4.61859 4.62096 4.71383 4.73677 4.81037 4.82887 4.87595 4.88505 5.03041 5.05915 5.11296 5.11930 5.20489 5.22484 5.24364 5.42952 5.48077 5.63109 5.66337 5.68779 5.72654 6.00250 6.12928 6.15898 6.23653 6.43728 6.52860 6.60912 6.88947 7.37652 7.51575 8.99004 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.002920 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.240518 B = 9588.272966 C =11208.919129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.291 6.291 3 C 0.473 3.527 4 N -0.645 5.645 5 C 0.628 3.372 6 N -0.673 5.673 7 C 0.171 3.829 8 C 0.052 3.948 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.523 4.523 12 H 0.053 0.947 13 C 0.026 3.974 14 N -0.902 5.902 15 Si 0.946 3.054 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.271 1.271 19 N -0.621 5.621 20 C 0.394 3.606 21 C -0.363 4.363 22 C 0.130 3.870 23 N -0.273 5.273 24 N -0.377 5.377 25 C 0.182 3.818 26 C -0.156 4.156 27 C -0.132 4.132 28 C -0.156 4.156 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.137 0.863 32 H 0.415 0.585 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.061 0.939 40 H 0.027 0.973 41 H 0.259 0.741 42 H 0.230 0.770 43 H 0.053 0.947 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.099 0.901 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.103 0.897 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.133 -13.254 0.023 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.193 6.193 3 C 0.275 3.725 4 N -0.388 5.388 5 C 0.268 3.732 6 N -0.308 5.308 7 C 0.048 3.952 8 C 0.051 3.949 9 C -0.178 4.178 10 C -0.178 4.178 11 C -0.562 4.562 12 H 0.071 0.929 13 C -0.173 4.173 14 N -0.541 5.541 15 Si 0.773 3.227 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.196 1.196 19 N -0.361 5.361 20 C 0.144 3.856 21 C -0.379 4.379 22 C -0.067 4.067 23 N -0.086 5.086 24 N -0.169 5.169 25 C 0.101 3.899 26 C -0.214 4.214 27 C -0.189 4.189 28 C -0.214 4.214 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.155 0.845 32 H 0.254 0.746 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.039 0.961 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.246 0.754 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.117 0.883 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.122 0.878 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.844 -12.540 0.012 21.810 hybrid contribution -1.995 0.123 0.014 1.999 sum 15.849 -12.417 0.026 20.134 Atomic orbital electron populations 1.23215 0.74932 1.05365 1.02577 1.86194 1.24888 1.22799 1.85397 1.19337 0.86905 0.84740 0.81512 1.67558 1.40223 0.97811 1.33222 1.18708 0.83994 0.85511 0.84974 1.44592 1.06103 1.04356 1.75792 1.21299 0.75602 0.98683 0.99666 1.18364 0.93945 0.89607 0.92934 1.21666 0.96787 1.02206 0.97123 1.21662 0.96791 1.02191 0.97130 1.21252 0.91343 0.92584 1.50972 0.92920 1.25488 1.01923 0.95168 0.94758 1.69927 1.35758 0.97616 1.50826 0.85741 0.81527 0.77502 0.77932 1.20578 1.21276 1.19574 1.66900 1.02613 1.31668 1.34870 1.18644 0.87259 0.88757 0.90927 1.19198 0.92757 0.96524 1.29424 1.24141 0.86522 1.01229 0.94794 1.76869 1.23197 0.85859 1.22673 1.48961 1.00687 1.04710 1.62498 1.20992 0.87126 0.84503 0.97253 1.22213 1.03618 1.00036 0.95561 1.21859 0.92269 1.01649 1.03129 1.22216 1.03630 1.00036 0.95562 0.92532 0.92541 0.84518 0.74606 0.93440 0.93453 0.95381 0.91991 0.96098 0.96078 0.92008 0.95371 0.93152 0.75422 0.92776 0.87791 0.92879 0.91954 0.88254 0.91944 0.92864 0.87797 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 10.42 113.37 1.18 1.87 16 2 O -0.29 -7.30 10.50 -86.48 -0.91 -8.21 16 3 C 0.47 14.53 7.58 85.17 0.65 15.18 16 4 N -0.64 -22.52 8.49 -310.25 -2.63 -25.15 16 5 C 0.63 22.89 8.41 261.48 2.20 25.08 16 6 N -0.67 -24.86 5.11 -351.02 -1.79 -26.65 16 7 C 0.17 6.96 4.45 86.38 0.38 7.34 16 8 C 0.05 2.38 0.50 -52.93 -0.03 2.36 16 9 C -0.12 -5.43 8.08 71.98 0.58 -4.85 16 10 C -0.12 -5.42 8.08 71.98 0.58 -4.84 16 11 C -0.52 -26.78 8.01 25.60 0.21 -26.57 16 12 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 13 C 0.03 1.36 5.15 84.66 0.44 1.79 16 14 N -0.90 -48.13 9.35 21.45 0.20 -47.93 16 15 Si 0.95 41.72 29.54 68.60 2.03 43.74 16 16 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 N -0.62 -21.52 9.38 -196.01 -1.84 -23.36 16 20 C 0.39 12.56 7.11 134.18 0.95 13.52 16 21 C -0.36 -10.78 6.19 -21.29 -0.13 -10.91 16 22 C 0.13 3.03 12.05 85.67 1.03 4.07 16 23 N -0.27 -6.89 11.50 -56.41 -0.65 -7.54 16 24 N -0.38 -10.22 3.49 -305.03 -1.07 -11.29 16 25 C 0.18 3.86 1.21 3.61 0.00 3.87 16 26 C -0.16 -3.18 8.52 71.98 0.61 -2.56 16 27 C -0.13 -2.08 7.97 71.99 0.57 -1.51 16 28 C -0.16 -3.18 8.52 71.98 0.61 -2.57 16 29 H 0.06 1.28 8.12 -2.38 -0.02 1.26 16 30 H 0.06 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.41 14.98 6.27 -92.71 -0.58 14.39 16 33 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.03 1.11 6.86 -2.39 -0.02 1.10 16 36 H 0.06 3.12 6.07 -2.39 -0.01 3.10 16 37 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 3.11 6.07 -2.38 -0.01 3.10 16 40 H 0.03 1.12 6.86 -2.39 -0.02 1.10 16 41 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 42 H 0.23 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.37 7.43 -2.39 -0.02 1.35 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.05 1.37 7.41 -2.39 -0.02 1.35 16 50 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -60.80 405.96 3.54 -57.26 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.35 Total: 27.87 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 9.85 Total: 21.26 kcal Atomic # 7 Polarization: -134.14 SS G_CDS: -7.78 Total: -141.92 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.91 Total: -8.21 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -60.80 3.54 -57.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596265598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.499 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds