Wall clock time and date at job start Wed Apr 1 2020 06:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99777 * 2 1 4 4 N 1.46505 * 109.46981 * 125.65123 * 3 2 1 5 5 C 1.37956 * 127.07663 * 275.74031 * 4 3 2 6 6 C 1.46958 * 126.49784 * 359.97438 * 5 4 3 7 7 O 1.21666 * 120.00035 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00439 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00408 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.46996 * 155.00113 * 9 8 6 11 11 C 1.53001 * 109.47401 * 275.00095 * 9 8 6 12 12 N 1.31600 * 107.00796 * 180.02562 * 5 4 3 13 13 N 1.28546 * 109.68973 * 359.97438 * 12 5 4 14 14 C 1.31993 * 110.00942 * 0.02562 * 13 12 5 15 15 N 1.37781 * 126.27045 * 180.26311 * 14 13 12 16 16 C 1.46849 * 111.00011 * 105.78039 * 15 14 13 17 17 C 1.53033 * 109.52716 * 174.15861 * 16 15 14 18 18 C 1.53118 * 109.27729 * 59.17550 * 17 16 15 19 19 C 1.53124 * 109.16016 * 302.34661 * 18 17 16 20 20 H 1.09001 * 109.50424 * 297.71068 * 19 18 17 21 21 C 1.50700 * 109.53413 * 177.61745 * 19 18 17 22 22 H 1.08006 * 119.99758 * 240.17737 * 21 19 18 23 23 C 1.37879 * 120.00486 * 60.17914 * 21 19 18 24 24 N 1.31517 * 119.99728 * 359.97438 * 23 21 19 25 25 Si 1.86802 * 120.00445 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46998 * 59.99655 * 25 23 21 27 27 H 1.48488 * 109.47089 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46866 * 300.00094 * 25 23 21 29 29 C 1.46846 * 111.00348 * 341.56563 * 15 14 13 30 30 H 1.07997 * 119.99911 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00122 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00122 * 180.02562 * 2 1 3 33 33 H 1.08994 * 109.47334 * 5.64559 * 3 2 1 34 34 H 1.09000 * 109.46901 * 245.64567 * 3 2 1 35 35 H 0.97004 * 119.99571 * 0.02562 * 8 6 5 36 36 H 1.09000 * 109.47092 * 35.00453 * 9 8 6 37 37 H 1.09000 * 109.46922 * 60.00236 * 10 9 8 38 38 H 1.09000 * 109.47064 * 180.02562 * 10 9 8 39 39 H 1.08996 * 109.47275 * 300.00377 * 10 9 8 40 40 H 1.08997 * 109.46714 * 179.97438 * 11 9 8 41 41 H 1.09000 * 109.47290 * 300.00237 * 11 9 8 42 42 H 1.08997 * 109.46716 * 60.00230 * 11 9 8 43 43 H 1.09006 * 109.46144 * 294.17199 * 16 15 14 44 44 H 1.08997 * 109.46549 * 54.14062 * 16 15 14 45 45 H 1.09003 * 109.50385 * 299.23655 * 17 16 15 46 46 H 1.08998 * 109.51014 * 179.11832 * 17 16 15 47 47 H 1.09006 * 109.52378 * 182.44699 * 18 17 16 48 48 H 1.08995 * 109.58093 * 62.28863 * 18 17 16 49 49 H 0.96996 * 120.00263 * 179.97438 * 24 23 21 50 50 H 1.08994 * 109.46274 * 305.85717 * 29 15 14 51 51 H 1.09003 * 109.46103 * 65.82413 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0048 1.3256 1.1224 5 6 2.7352 1.6815 2.4277 6 6 1.4385 2.1172 2.9649 7 8 0.4700 2.1901 2.2322 8 7 1.3222 2.4360 4.2692 9 6 0.0298 2.8709 4.8046 10 6 -0.0258 2.5765 6.3050 11 6 -0.1385 4.3739 4.5732 12 7 3.8595 1.5579 3.1005 13 7 4.7930 1.1555 2.3137 14 6 4.3181 0.9993 1.0921 15 7 5.0277 0.5758 -0.0103 16 6 4.6808 -0.8077 -0.3598 17 6 5.3746 -1.1941 -1.6679 18 6 6.8899 -1.0558 -1.4965 19 6 7.2200 0.3819 -1.0857 20 1 6.9116 1.0662 -1.8761 21 6 8.7039 0.5127 -0.8578 22 1 9.0773 0.8093 0.1113 23 6 9.5849 0.2539 -1.8863 24 7 9.1302 -0.1077 -3.0662 25 14 11.4243 0.4153 -1.6036 26 1 11.8437 -0.5190 -0.5282 27 1 12.1487 0.0841 -2.8567 28 1 11.7427 1.8087 -1.2006 29 6 6.4727 0.7226 0.2056 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3595 2.1311 0.1011 34 1 2.6121 1.4079 -0.9362 35 1 2.0945 2.3783 4.8533 36 1 -0.7724 2.3333 4.2989 37 1 0.7763 3.1141 6.8107 38 1 -0.9876 2.8997 6.7033 39 1 0.0941 1.5058 6.4699 40 1 -1.1004 4.6973 4.9711 41 1 0.6636 4.9115 5.0788 42 1 -0.0990 4.5836 3.5043 43 1 5.0084 -1.4764 0.4363 44 1 3.6011 -0.8914 -0.4829 45 1 5.0371 -0.5346 -2.4675 46 1 5.1295 -2.2261 -1.9189 47 1 7.3858 -1.2883 -2.4390 48 1 7.2344 -1.7436 -0.7244 49 1 9.7500 -0.2895 -3.7899 50 1 6.6944 1.7503 0.4931 51 1 6.7919 0.0468 0.9990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597286654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:27:56 Heat of formation + Delta-G solvation = 65.639680 kcal Electronic energy + Delta-G solvation = -31542.644949 eV Core-core repulsion = 27478.937270 eV Total energy + Delta-G solvation = -4063.707679 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.95085 -39.84666 -38.46083 -36.59877 -35.88343 -34.02260 -32.79930 -32.31842 -31.75104 -30.07313 -29.12394 -27.58719 -26.97380 -25.17177 -24.30245 -23.90327 -21.82342 -21.46334 -21.19400 -20.64129 -19.92187 -18.80561 -18.08619 -16.92069 -16.74770 -16.44401 -16.18191 -15.60591 -15.18499 -14.89712 -14.69400 -14.48733 -14.32222 -14.06521 -13.99901 -13.40400 -13.24161 -12.97709 -12.76129 -12.64104 -12.59739 -12.57370 -12.51165 -12.00232 -11.76506 -11.72173 -11.60816 -11.34041 -10.96630 -10.87370 -10.77395 -10.70492 -10.30743 -10.26862 -10.21101 -9.95598 -9.73901 -9.69580 -9.52960 -9.37338 -9.29051 -8.80858 -8.36531 -8.06345 -6.02729 -4.08542 1.13686 1.72271 2.30445 2.46082 3.05299 3.19421 3.32473 3.36611 3.40161 3.94663 4.19137 4.43877 4.49230 4.63115 4.65637 4.68569 4.87339 4.95178 5.01273 5.20988 5.22327 5.28796 5.30112 5.41699 5.44049 5.48241 5.54334 5.61968 5.65196 5.73870 5.78006 5.84606 5.90157 6.02272 6.15435 6.25326 6.30610 6.37168 6.44794 6.46686 6.54624 6.65714 6.79133 6.93941 7.14230 7.19637 7.29954 7.55141 7.70192 7.83327 7.94811 8.06257 8.37958 8.65972 8.94424 9.56208 11.03685 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017429 B = 0.002584 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.089519 B =10834.872379 C =11983.730583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.187 4.187 3 C 0.138 3.862 4 N -0.438 5.438 5 C 0.098 3.902 6 C 0.620 3.380 7 O -0.534 6.534 8 N -0.705 5.705 9 C 0.140 3.860 10 C -0.162 4.162 11 C -0.165 4.165 12 N -0.232 5.232 13 N -0.315 5.315 14 C 0.397 3.603 15 N -0.459 5.459 16 C 0.063 3.937 17 C -0.116 4.116 18 C -0.115 4.115 19 C 0.055 3.945 20 H 0.036 0.964 21 C -0.514 4.514 22 H 0.057 0.943 23 C 0.064 3.936 24 N -0.889 5.889 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.277 1.277 29 C 0.082 3.918 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.412 0.588 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.096 0.904 48 H 0.036 0.964 49 H 0.261 0.739 50 H 0.070 0.930 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.014 2.495 11.187 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.205 4.205 3 C 0.016 3.984 4 N -0.131 5.131 5 C -0.168 4.168 6 C 0.403 3.597 7 O -0.409 6.409 8 N -0.358 5.358 9 C 0.036 3.964 10 C -0.219 4.219 11 C -0.223 4.223 12 N -0.081 5.081 13 N -0.165 5.165 14 C 0.042 3.958 15 N -0.184 5.184 16 C -0.063 4.063 17 C -0.154 4.154 18 C -0.153 4.153 19 C 0.036 3.964 20 H 0.054 0.946 21 C -0.553 4.553 22 H 0.075 0.925 23 C -0.137 4.137 24 N -0.528 5.528 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.213 1.213 28 H -0.202 1.202 29 C -0.043 4.043 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.248 0.752 36 H 0.109 0.891 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.115 0.885 48 H 0.055 0.945 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.873 2.823 11.167 23.840 hybrid contribution 0.781 -0.417 -0.171 0.902 sum -20.091 2.405 10.996 23.030 Atomic orbital electron populations 1.23932 0.95451 1.02420 0.96260 1.23020 0.96416 0.97506 1.03599 1.21138 0.91347 0.98144 0.87757 1.45931 1.09310 1.48464 1.09364 1.23686 0.97645 1.12491 0.83006 1.16120 0.84239 0.76781 0.82555 1.90800 1.37977 1.54103 1.57995 1.45750 1.13607 1.67492 1.08905 1.21009 0.85344 0.95557 0.94514 1.22089 1.03153 1.02618 0.94074 1.22207 1.02145 0.95189 1.02804 1.74364 0.95562 1.12591 1.25548 1.75069 1.22391 1.21592 0.97456 1.22818 0.82142 0.98744 0.92110 1.58617 1.10276 1.22739 1.26729 1.22355 0.99587 0.85029 0.99325 1.21720 0.99151 0.99742 0.94789 1.21730 0.90688 0.99254 1.03600 1.18739 0.93674 0.93282 0.90667 0.94569 1.21033 0.90439 1.46439 0.97376 0.92483 1.24912 0.98789 0.94958 0.95054 1.69863 1.34529 1.46513 1.01880 0.86639 0.85214 0.78677 0.77379 1.20248 1.21342 1.20225 1.22457 0.79044 1.01607 1.01164 0.88088 0.87596 0.86929 0.87221 0.87110 0.75201 0.89139 0.91715 0.90720 0.91752 0.91447 0.92195 0.91969 0.93848 0.91646 0.91619 0.92431 0.88533 0.94531 0.92914 0.91100 0.93474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 14.03 29.02 0.41 -1.01 16 2 C -0.19 -2.13 9.25 -36.02 -0.33 -2.47 16 3 C 0.14 1.76 5.49 -5.19 -0.03 1.73 16 4 N -0.44 -6.79 2.79 -116.43 -0.33 -7.12 16 5 C 0.10 1.50 7.90 -153.51 -1.21 0.29 16 6 C 0.62 8.05 7.76 -12.73 -0.10 7.95 16 7 O -0.53 -7.36 14.41 5.22 0.08 -7.28 16 8 N -0.70 -6.97 5.07 -55.03 -0.28 -7.25 16 9 C 0.14 1.06 3.18 -67.93 -0.22 0.85 16 10 C -0.16 -0.85 9.38 37.16 0.35 -0.50 16 11 C -0.17 -1.19 9.48 37.16 0.35 -0.84 16 12 N -0.23 -3.97 11.92 32.51 0.39 -3.59 16 13 N -0.32 -6.08 11.44 30.07 0.34 -5.74 16 14 C 0.40 7.15 6.81 -320.57 -2.18 4.96 16 15 N -0.46 -8.50 4.55 -174.94 -0.80 -9.29 16 16 C 0.06 1.05 5.36 -3.83 -0.02 1.03 16 17 C -0.12 -2.05 6.09 -26.65 -0.16 -2.21 16 18 C -0.11 -2.54 5.03 -26.61 -0.13 -2.68 16 19 C 0.06 1.33 2.26 -91.69 -0.21 1.12 16 20 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 21 C -0.51 -13.74 8.56 -34.44 -0.29 -14.03 16 22 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 23 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 24 N -0.89 -24.54 11.36 55.43 0.63 -23.91 16 25 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 29 C 0.08 1.76 4.08 -3.84 -0.02 1.74 16 30 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.11 1.05 7.84 -52.48 -0.41 0.63 16 32 H 0.11 1.31 6.30 -52.48 -0.33 0.98 16 33 H 0.11 1.35 6.49 -51.93 -0.34 1.01 16 34 H 0.11 1.39 8.06 -51.93 -0.42 0.98 16 35 H 0.41 3.78 8.31 -40.82 -0.34 3.44 16 36 H 0.09 0.77 7.58 -51.93 -0.39 0.38 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 0.93 5.03 -51.93 -0.26 0.67 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.10 2.40 6.16 -51.93 -0.32 2.08 16 48 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.07 1.58 8.10 -51.93 -0.42 1.16 16 51 H 0.05 1.04 8.09 -51.93 -0.42 0.62 16 LS Contribution 408.04 15.07 6.15 6.15 Total: -1.00 -29.61 408.04 -11.00 -40.61 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.27 Total: 3.86 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -3.90 Total: -2.42 kcal Atomic # 7 Polarization: -56.86 SS G_CDS: -0.04 Total: -56.90 kcal Atomic # 8 Polarization: -7.36 SS G_CDS: 0.08 Total: -7.28 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -29.61 -11.00 -40.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597286654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.254 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds