Wall clock time and date at job start Wed Apr 1 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46855 * 2 1 4 4 C 1.52993 * 109.47150 * 239.99947 * 2 1 3 5 5 C 1.50701 * 109.47210 * 184.99921 * 4 2 1 6 6 N 1.31804 * 119.03904 * 269.73181 * 5 4 2 7 7 C 1.32266 * 120.89197 * 179.71820 * 6 5 4 8 8 C 1.39228 * 119.01267 * 0.53868 * 7 6 5 9 9 N 1.40001 * 120.86654 * 179.75852 * 8 7 6 10 10 C 1.34776 * 120.00286 * 32.38379 * 9 8 7 11 11 O 1.21584 * 119.99656 * 5.22671 * 10 9 8 12 12 N 1.34777 * 120.00415 * 185.23244 * 10 9 8 13 13 C 1.47076 * 120.88347 * 184.86517 * 12 10 9 14 14 C 1.53691 * 108.27731 * 128.75059 * 13 12 10 15 15 N 1.46907 * 109.25764 * 54.08430 * 14 13 12 16 16 C 1.46896 * 111.00052 * 172.60995 * 15 14 13 17 17 C 1.50703 * 109.47109 * 294.29897 * 16 15 14 18 18 H 1.08003 * 119.99989 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00305 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99711 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00207 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46958 * 89.99652 * 21 19 17 23 23 H 1.48502 * 109.46899 * 209.99527 * 21 19 17 24 24 H 1.48496 * 109.46902 * 330.00022 * 21 19 17 25 25 C 1.46905 * 111.26472 * 296.75390 * 15 14 13 26 26 C 1.47084 * 120.87918 * 5.14053 * 12 10 9 27 27 C 1.39224 * 118.26332 * 359.73436 * 8 7 6 28 28 N 1.31796 * 119.04057 * 89.99838 * 5 4 2 29 29 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47659 * 300.00014 * 1 2 3 31 31 H 1.09003 * 109.47663 * 60.00219 * 1 2 3 32 32 H 1.09001 * 109.47296 * 119.99405 * 2 1 3 33 33 H 1.09001 * 109.46683 * 299.99781 * 3 2 1 34 34 H 1.08995 * 109.46978 * 59.99916 * 3 2 1 35 35 H 1.08995 * 109.46719 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47158 * 304.99889 * 4 2 1 37 37 H 1.09002 * 109.47549 * 64.99939 * 4 2 1 38 38 H 1.07993 * 120.49105 * 180.30020 * 7 6 5 39 39 H 0.96999 * 119.99609 * 212.38760 * 9 8 7 40 40 H 1.08997 * 109.62766 * 248.52182 * 13 12 10 41 41 H 1.09000 * 109.62697 * 9.10266 * 13 12 10 42 42 H 1.08997 * 109.65021 * 294.08174 * 14 13 12 43 43 H 1.09000 * 109.42368 * 173.94521 * 14 13 12 44 44 H 1.08996 * 109.47515 * 54.29949 * 16 15 14 45 45 H 1.08998 * 109.47059 * 174.30192 * 16 15 14 46 46 H 0.97000 * 119.99763 * 179.97438 * 20 19 17 47 47 H 1.08997 * 109.49686 * 303.14372 * 25 15 14 48 48 H 1.09001 * 109.48705 * 183.05957 * 25 15 14 49 49 H 1.09001 * 109.62613 * 350.89580 * 26 12 10 50 50 H 1.08993 * 109.62820 * 111.47534 * 26 12 10 51 51 H 1.08000 * 120.49129 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 7 4.2742 0.1331 -1.7130 7 6 5.5952 0.0783 -1.6755 8 6 6.2089 -1.0213 -1.0817 9 7 7.6042 -1.1215 -1.0252 10 6 8.3558 -0.0084 -0.9137 11 8 7.8214 1.0738 -0.7667 12 7 9.6998 -0.0947 -0.9654 13 6 10.5416 1.0901 -0.7402 14 6 11.5941 0.7385 0.3231 15 7 12.3203 -0.4684 -0.0944 16 6 13.4506 -0.7398 0.8037 17 6 14.4698 0.3629 0.6759 18 1 14.2955 1.1831 -0.0047 19 6 15.6253 0.3242 1.4272 20 7 15.8377 -0.6749 2.2556 21 14 16.8889 1.6907 1.2683 22 1 16.5831 2.7640 2.2480 23 1 18.2438 1.1457 1.5378 24 1 16.8442 2.2487 -0.1072 25 6 11.4228 -1.6285 -0.1766 26 6 10.3634 -1.3751 -1.2545 27 6 5.3988 -2.0183 -0.5451 28 7 4.0848 -1.8861 -0.6182 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6053 -1.7198 -1.2951 37 1 1.7516 -0.1583 -2.1370 38 1 6.1888 0.8728 -2.1027 39 1 8.0299 -1.9921 -1.0663 40 1 11.0358 1.3703 -1.6704 41 1 9.9243 1.9161 -0.3870 42 1 11.1028 0.5550 1.2786 43 1 12.2950 1.5668 0.4272 44 1 13.0939 -0.7875 1.8325 45 1 13.9089 -1.6912 0.5336 46 1 16.6508 -0.7023 2.7839 47 1 10.9338 -1.7790 0.7858 48 1 11.9994 -2.5167 -0.4351 49 1 9.6282 -2.1797 -1.2414 50 1 10.8408 -1.3273 -2.2331 51 1 5.8368 -2.8868 -0.0756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603006671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:40 Heat of formation + Delta-G solvation = 29.708885 kcal Electronic energy + Delta-G solvation = -30162.361619 eV Core-core repulsion = 26097.095864 eV Total energy + Delta-G solvation = -4065.265755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.66374 -40.39044 -38.00539 -36.77103 -35.31975 -34.63453 -33.90505 -32.51396 -31.36022 -30.64282 -28.49589 -27.40079 -27.24108 -25.59209 -25.01208 -23.69569 -23.00236 -22.22973 -21.01885 -20.43537 -19.82034 -18.62874 -17.62348 -17.34862 -17.02348 -16.41693 -15.72025 -15.55074 -15.24050 -15.13552 -14.79342 -14.60132 -14.19236 -14.15379 -13.94324 -13.83234 -13.80867 -13.67717 -13.16877 -12.78084 -12.52121 -12.42298 -12.18629 -12.10787 -11.82467 -11.52990 -11.39705 -11.29833 -11.17763 -11.03328 -10.98588 -10.93439 -10.88873 -10.85405 -10.71400 -10.62523 -10.27646 -9.95877 -9.44201 -9.34706 -8.84603 -8.54356 -8.43526 -7.45031 -6.12391 -4.14585 0.62128 0.86622 2.26062 2.87872 3.26298 3.33124 3.36694 3.48703 3.53447 3.74130 3.95411 4.26238 4.32922 4.59240 4.61090 4.63109 4.67920 4.71127 4.99105 5.07026 5.15188 5.23281 5.26406 5.28128 5.31775 5.41715 5.46783 5.50159 5.58504 5.63766 5.66188 5.69770 5.76509 5.78246 5.87286 5.90971 6.03590 6.04640 6.12667 6.21828 6.30793 6.39928 6.46327 6.69270 6.78540 7.11543 7.18440 7.57033 7.66725 7.89622 7.90903 8.02430 8.24786 8.38407 8.92474 9.50467 10.98353 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.001777 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.433596 B =15756.631866 C =16090.728899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.044 4.044 5 C 0.292 3.708 6 N -0.491 5.491 7 C 0.150 3.850 8 C 0.068 3.932 9 N -0.679 5.679 10 C 0.706 3.294 11 O -0.578 6.578 12 N -0.615 5.615 13 C 0.132 3.868 14 C 0.049 3.951 15 N -0.534 5.534 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.039 3.961 26 C 0.115 3.885 27 C 0.119 3.881 28 N -0.496 5.496 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.179 0.821 39 H 0.410 0.590 40 H 0.076 0.924 41 H 0.091 0.909 42 H 0.026 0.974 43 H 0.100 0.900 44 H -0.008 1.008 45 H 0.032 0.968 46 H 0.262 0.738 47 H 0.028 0.972 48 H 0.083 0.917 49 H 0.069 0.931 50 H 0.082 0.918 51 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.116 -3.643 -7.660 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.083 4.083 5 C 0.024 3.976 6 N -0.205 5.205 7 C -0.020 4.020 8 C -0.033 4.033 9 N -0.330 5.330 10 C 0.408 3.592 11 O -0.455 6.455 12 N -0.351 5.351 13 C 0.009 3.991 14 C -0.080 4.080 15 N -0.259 5.259 16 C 0.069 3.931 17 C -0.550 4.550 18 H 0.083 0.917 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.091 4.091 26 C -0.008 4.008 27 C -0.050 4.050 28 N -0.209 5.209 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.108 0.892 38 H 0.196 0.804 39 H 0.249 0.751 40 H 0.094 0.906 41 H 0.109 0.891 42 H 0.044 0.956 43 H 0.118 0.882 44 H 0.009 0.991 45 H 0.050 0.950 46 H 0.072 0.928 47 H 0.046 0.954 48 H 0.102 0.898 49 H 0.087 0.913 50 H 0.101 0.899 51 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -26.045 -2.754 -7.949 27.370 hybrid contribution 1.959 -0.213 0.993 2.207 sum -24.086 -2.967 -6.956 25.245 Atomic orbital electron populations 1.21815 0.94458 1.01867 1.02049 1.21055 0.95908 0.96648 0.97271 1.21854 1.01617 0.95308 1.01587 1.20459 0.85659 1.02349 0.99793 1.23086 0.97812 0.85400 0.91284 1.68336 1.06088 1.27946 1.18127 1.23476 0.90122 0.96421 0.91952 1.19354 0.84214 0.99518 1.00186 1.42676 1.03343 1.09936 1.77008 1.15806 0.81732 0.83652 0.77969 1.90925 1.71352 1.26307 1.56904 1.47478 1.02937 1.11862 1.72838 1.21956 0.91076 0.86067 0.99986 1.22473 0.95048 0.96022 0.94432 1.62099 1.08787 1.01277 1.53767 1.19735 0.86661 0.97856 0.88848 1.21126 1.02928 1.07649 1.23293 0.91736 1.24990 0.98227 0.96129 0.95178 1.69951 1.26838 1.30926 1.25943 0.86486 0.80546 0.81804 0.78528 1.20695 1.21233 1.19708 1.22401 0.94232 0.96080 0.96354 1.21877 0.94729 0.83774 1.00434 1.23021 0.88707 0.98658 0.94648 1.68178 1.11782 1.24370 1.16591 0.92500 0.92449 0.92428 0.91007 0.92265 0.92999 0.92483 0.89347 0.89248 0.80376 0.75062 0.90565 0.89090 0.95621 0.88208 0.99064 0.94981 0.92832 0.95423 0.89818 0.91304 0.89949 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.19 37.16 0.34 -0.53 16 2 C -0.09 -0.72 2.91 -90.62 -0.26 -0.98 16 3 C -0.15 -1.32 8.91 37.16 0.33 -0.99 16 4 C -0.04 -0.37 5.12 -27.89 -0.14 -0.51 16 5 C 0.29 3.26 6.24 -157.19 -0.98 2.28 16 6 N -0.49 -6.04 9.27 -10.58 -0.10 -6.14 16 7 C 0.15 1.87 9.94 -17.00 -0.17 1.70 16 8 C 0.07 0.75 6.34 -83.39 -0.53 0.23 16 9 N -0.68 -7.01 5.27 -14.04 -0.07 -7.08 16 10 C 0.71 9.63 8.09 -86.92 -0.70 8.92 16 11 O -0.58 -9.63 13.51 5.29 0.07 -9.55 16 12 N -0.62 -8.24 3.00 -177.91 -0.53 -8.78 16 13 C 0.13 1.96 6.61 -3.37 -0.02 1.94 16 14 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 15 N -0.53 -10.28 4.62 -235.46 -1.09 -11.37 16 16 C 0.19 4.70 4.72 -4.98 -0.02 4.68 16 17 C -0.51 -13.57 8.41 -34.44 -0.29 -13.86 16 18 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -25.73 13.29 55.43 0.74 -24.99 16 21 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.04 0.59 5.62 -3.70 -0.02 0.56 16 26 C 0.12 1.31 6.60 -3.60 -0.02 1.29 16 27 C 0.12 1.17 11.26 -17.00 -0.19 0.98 16 28 N -0.50 -5.52 10.32 -10.58 -0.11 -5.63 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.65 6.67 -51.93 -0.35 0.30 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.18 2.36 6.46 -52.49 -0.34 2.02 16 39 H 0.41 3.05 6.34 -40.82 -0.26 2.79 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.09 1.37 7.09 -51.93 -0.37 1.00 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 1.92 6.67 -51.93 -0.35 1.58 16 44 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 45 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 46 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 1.20 7.99 -51.93 -0.41 0.78 16 49 H 0.07 0.54 5.63 -51.93 -0.29 0.24 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 51 H 0.17 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 405.18 15.07 6.11 6.11 Total: -1.00 -31.65 405.18 -11.02 -42.67 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -8.21 Total: 0.88 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -2.80 Total: 8.01 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: -1.17 Total: -63.98 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.07 Total: -9.55 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.65 -11.02 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603006671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.378 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds