Wall clock time and date at job start Wed Apr 1 2020 04:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53011 * 109.46855 * 2 1 4 4 C 1.52993 * 109.47150 * 239.99947 * 2 1 3 5 5 C 1.50701 * 109.47210 * 184.99921 * 4 2 1 6 6 N 1.31804 * 119.03904 * 269.73181 * 5 4 2 7 7 C 1.32266 * 120.89197 * 179.71820 * 6 5 4 8 8 C 1.39228 * 119.01267 * 0.53868 * 7 6 5 9 9 N 1.40001 * 120.86654 * 179.75852 * 8 7 6 10 10 C 1.34776 * 120.00286 * 32.38379 * 9 8 7 11 11 O 1.21584 * 119.99656 * 5.22671 * 10 9 8 12 12 N 1.34777 * 120.00415 * 185.23244 * 10 9 8 13 13 C 1.47076 * 120.88347 * 184.86517 * 12 10 9 14 14 C 1.53691 * 108.27731 * 128.75059 * 13 12 10 15 15 N 1.46907 * 109.25764 * 54.08430 * 14 13 12 16 16 C 1.46896 * 111.00052 * 172.60995 * 15 14 13 17 17 C 1.50703 * 109.47109 * 294.29897 * 16 15 14 18 18 H 1.08003 * 119.99989 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00305 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99711 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00207 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46958 * 89.99652 * 21 19 17 23 23 H 1.48502 * 109.46899 * 209.99527 * 21 19 17 24 24 H 1.48496 * 109.46902 * 330.00022 * 21 19 17 25 25 C 1.46905 * 111.26472 * 296.75390 * 15 14 13 26 26 C 1.47084 * 120.87918 * 5.14053 * 12 10 9 27 27 C 1.39224 * 118.26332 * 359.73436 * 8 7 6 28 28 N 1.31796 * 119.04057 * 89.99838 * 5 4 2 29 29 H 1.09000 * 109.47277 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47659 * 300.00014 * 1 2 3 31 31 H 1.09003 * 109.47663 * 60.00219 * 1 2 3 32 32 H 1.09001 * 109.47296 * 119.99405 * 2 1 3 33 33 H 1.09001 * 109.46683 * 299.99781 * 3 2 1 34 34 H 1.08995 * 109.46978 * 59.99916 * 3 2 1 35 35 H 1.08995 * 109.46719 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47158 * 304.99889 * 4 2 1 37 37 H 1.09002 * 109.47549 * 64.99939 * 4 2 1 38 38 H 1.07993 * 120.49105 * 180.30020 * 7 6 5 39 39 H 0.96999 * 119.99609 * 212.38760 * 9 8 7 40 40 H 1.08997 * 109.62766 * 248.52182 * 13 12 10 41 41 H 1.09000 * 109.62697 * 9.10266 * 13 12 10 42 42 H 1.08997 * 109.65021 * 294.08174 * 14 13 12 43 43 H 1.09000 * 109.42368 * 173.94521 * 14 13 12 44 44 H 1.08996 * 109.47515 * 54.29949 * 16 15 14 45 45 H 1.08998 * 109.47059 * 174.30192 * 16 15 14 46 46 H 0.97000 * 119.99763 * 179.97438 * 20 19 17 47 47 H 1.08997 * 109.49686 * 303.14372 * 25 15 14 48 48 H 1.09001 * 109.48705 * 183.05957 * 25 15 14 49 49 H 1.09001 * 109.62613 * 350.89580 * 26 12 10 50 50 H 1.08993 * 109.62820 * 111.47534 * 26 12 10 51 51 H 1.08000 * 120.49129 * 180.02562 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.8294 -1.1888 6 7 4.2742 0.1331 -1.7130 7 6 5.5952 0.0783 -1.6755 8 6 6.2089 -1.0213 -1.0817 9 7 7.6042 -1.1215 -1.0252 10 6 8.3558 -0.0084 -0.9137 11 8 7.8214 1.0738 -0.7667 12 7 9.6998 -0.0947 -0.9654 13 6 10.5416 1.0901 -0.7402 14 6 11.5941 0.7385 0.3231 15 7 12.3203 -0.4684 -0.0944 16 6 13.4506 -0.7398 0.8037 17 6 14.4698 0.3629 0.6759 18 1 14.2955 1.1831 -0.0047 19 6 15.6253 0.3242 1.4272 20 7 15.8377 -0.6749 2.2556 21 14 16.8889 1.6907 1.2683 22 1 16.5831 2.7640 2.2480 23 1 18.2438 1.1457 1.5378 24 1 16.8442 2.2487 -0.1072 25 6 11.4228 -1.6285 -0.1766 26 6 10.3634 -1.3751 -1.2545 27 6 5.3988 -2.0183 -0.5451 28 7 4.0848 -1.8861 -0.6182 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5137 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6053 -1.7198 -1.2951 37 1 1.7516 -0.1583 -2.1370 38 1 6.1888 0.8728 -2.1027 39 1 8.0299 -1.9921 -1.0663 40 1 11.0358 1.3703 -1.6704 41 1 9.9243 1.9161 -0.3870 42 1 11.1028 0.5550 1.2786 43 1 12.2950 1.5668 0.4272 44 1 13.0939 -0.7875 1.8325 45 1 13.9089 -1.6912 0.5336 46 1 16.6508 -0.7023 2.7839 47 1 10.9338 -1.7790 0.7858 48 1 11.9994 -2.5167 -0.4351 49 1 9.6282 -2.1797 -1.2414 50 1 10.8408 -1.3273 -2.2331 51 1 5.8368 -2.8868 -0.0756 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603006671.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:39 Heat of formation + Delta-G solvation = 9.077265 kcal Electronic energy + Delta-G solvation = -30163.256273 eV Core-core repulsion = 26097.095864 eV Total energy + Delta-G solvation = -4066.160409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.56126 -41.42137 -39.29797 -37.53002 -36.27075 -36.06037 -34.77292 -34.41415 -32.40679 -31.69422 -30.00944 -28.24218 -27.98804 -27.12664 -25.88275 -24.85818 -24.16315 -23.67898 -22.31885 -21.12137 -20.89013 -19.71628 -18.65441 -18.40417 -18.26632 -17.82530 -16.87622 -16.72062 -16.42656 -16.13289 -15.97207 -15.82637 -15.49349 -15.39054 -15.17335 -14.81781 -14.67797 -14.58991 -14.40517 -14.06388 -13.61054 -13.49488 -13.13264 -13.05262 -12.82925 -12.75877 -12.62085 -12.60508 -12.38339 -12.34106 -12.33156 -12.19103 -11.96044 -11.83978 -11.72984 -11.70980 -11.56513 -11.42543 -11.23925 -10.62255 -10.29861 -9.96829 -9.39958 -9.05285 -8.21148 -6.30541 -0.23137 0.01109 1.25709 1.42527 1.43029 1.54449 1.82851 2.40163 2.54668 2.68645 2.98262 3.11566 3.15194 3.21317 3.44761 3.78371 3.87986 3.97254 3.99674 4.01573 4.05425 4.11399 4.23308 4.33045 4.42297 4.52670 4.62799 4.69280 4.69518 4.77113 4.82679 4.83704 4.89505 4.94090 4.99577 5.00696 5.02633 5.12049 5.14685 5.20614 5.26595 5.34889 5.40108 5.46980 5.48606 5.61909 5.68416 5.93003 6.03305 6.23299 6.56645 6.62915 6.85237 7.04981 7.21082 7.39403 8.89704 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.001777 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.433596 B =15756.631866 C =16090.728899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.043 4.043 5 C 0.285 3.715 6 N -0.507 5.507 7 C 0.134 3.866 8 C 0.061 3.939 9 N -0.660 5.660 10 C 0.707 3.293 11 O -0.611 6.611 12 N -0.617 5.617 13 C 0.145 3.855 14 C 0.055 3.945 15 N -0.537 5.537 16 C 0.208 3.792 17 C -0.523 4.523 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.966 3.034 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.263 1.263 25 C 0.035 3.965 26 C 0.123 3.877 27 C 0.130 3.870 28 N -0.506 5.506 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.028 0.972 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.165 0.835 39 H 0.426 0.574 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.010 0.990 43 H 0.080 0.920 44 H -0.041 1.041 45 H 0.012 0.988 46 H 0.264 0.736 47 H 0.022 0.978 48 H 0.092 0.908 49 H 0.114 0.886 50 H 0.094 0.906 51 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.561 -4.486 -8.755 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.105 4.105 3 C -0.201 4.201 4 C -0.081 4.081 5 C 0.018 3.982 6 N -0.221 5.221 7 C -0.035 4.035 8 C -0.040 4.040 9 N -0.312 5.312 10 C 0.409 3.591 11 O -0.490 6.490 12 N -0.353 5.353 13 C 0.022 3.978 14 C -0.074 4.074 15 N -0.262 5.262 16 C 0.082 3.918 17 C -0.562 4.562 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.202 1.202 23 H -0.210 1.210 24 H -0.187 1.187 25 C -0.094 4.094 26 C 0.001 3.999 27 C -0.039 4.039 28 N -0.219 5.219 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.047 0.953 36 H 0.121 0.879 37 H 0.114 0.886 38 H 0.182 0.818 39 H 0.269 0.731 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.029 0.971 43 H 0.099 0.901 44 H -0.023 1.023 45 H 0.031 0.969 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.110 0.890 49 H 0.132 0.868 50 H 0.112 0.888 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -27.516 -3.630 -9.072 29.199 hybrid contribution 2.329 0.010 1.357 2.695 sum -25.187 -3.620 -7.715 26.589 Atomic orbital electron populations 1.21776 0.92588 1.02733 1.02588 1.21018 0.97357 0.95515 0.96572 1.21823 0.99729 0.96430 1.02075 1.20575 0.84072 1.03325 1.00172 1.23608 0.98926 0.85071 0.90593 1.68336 1.06156 1.28666 1.18961 1.23374 0.90456 0.96876 0.92789 1.19355 0.84390 0.99584 1.00670 1.42374 1.02919 1.09722 1.76198 1.15867 0.81683 0.83910 0.77624 1.90915 1.71929 1.27940 1.58259 1.47441 1.02928 1.12058 1.72835 1.21686 0.90303 0.86729 0.99119 1.22386 0.95148 0.94871 0.94998 1.62001 1.09086 1.03306 1.51826 1.19375 0.88132 0.96332 0.87970 1.21481 1.03523 1.08134 1.23014 0.91586 1.25866 1.00383 0.98437 0.94837 1.70073 1.27544 1.32854 1.26935 0.85427 0.77795 0.78810 0.78861 1.20195 1.20951 1.18733 1.22557 0.94561 0.94701 0.97582 1.21976 0.94665 0.84092 0.99190 1.23572 0.88186 0.98944 0.93221 1.68282 1.12381 1.24373 1.16871 0.91480 0.92145 0.91680 0.92149 0.91826 0.92465 0.95255 0.87933 0.88632 0.81821 0.73140 0.89653 0.89310 0.97128 0.90134 1.02347 0.96945 0.92766 0.95996 0.88990 0.86844 0.88829 0.77905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.19 71.98 0.66 -0.74 16 2 C -0.08 -1.26 2.91 -10.79 -0.03 -1.29 16 3 C -0.14 -2.53 8.91 71.99 0.64 -1.89 16 4 C -0.04 -0.66 5.12 29.85 0.15 -0.50 16 5 C 0.29 6.09 6.24 138.75 0.87 6.95 16 6 N -0.51 -12.39 9.27 -187.39 -1.74 -14.12 16 7 C 0.13 3.32 9.94 84.87 0.84 4.16 16 8 C 0.06 1.24 6.34 38.31 0.24 1.49 16 9 N -0.66 -12.05 5.27 -316.59 -1.67 -13.72 16 10 C 0.71 18.25 8.09 179.05 1.45 19.70 16 11 O -0.61 -20.23 13.51 -3.98 -0.05 -20.28 16 12 N -0.62 -15.50 3.00 -835.06 -2.51 -18.01 16 13 C 0.14 4.23 6.61 86.50 0.57 4.80 16 14 C 0.06 2.00 5.47 86.53 0.47 2.48 16 15 N -0.54 -20.79 4.62 -898.87 -4.15 -24.95 16 16 C 0.21 10.41 4.72 85.56 0.40 10.82 16 17 C -0.52 -28.27 8.41 25.60 0.22 -28.06 16 18 H 0.07 3.47 7.13 -2.91 -0.02 3.45 16 19 C 0.00 0.16 5.46 84.65 0.46 0.62 16 20 N -0.93 -54.62 13.29 21.45 0.28 -54.34 16 21 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 25 C 0.04 1.01 5.62 86.38 0.49 1.50 16 26 C 0.12 2.46 6.60 86.35 0.57 3.03 16 27 C 0.13 2.24 11.26 84.87 0.96 3.20 16 28 N -0.51 -10.32 10.32 -187.39 -1.93 -12.25 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.03 0.67 6.67 -2.39 -0.02 0.66 16 36 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.16 4.48 6.46 -2.91 -0.02 4.46 16 39 H 0.43 4.72 6.34 -92.71 -0.59 4.13 16 40 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.09 2.67 7.09 -2.39 -0.02 2.65 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 3.20 6.67 -2.39 -0.02 3.19 16 44 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 45 H 0.01 0.66 7.97 -2.39 -0.02 0.65 16 46 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 47 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 48 H 0.09 2.51 7.99 -2.39 -0.02 2.49 16 49 H 0.11 1.27 5.63 -2.39 -0.01 1.25 16 50 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.20 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -70.90 405.18 -0.43 -71.33 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 0.35 Total: 14.98 kcal Atomic # 6 Polarization: 17.29 SS G_CDS: 8.96 Total: 26.25 kcal Atomic # 7 Polarization: -125.67 SS G_CDS: -11.72 Total: -137.39 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.05 Total: -20.28 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -70.90 -0.43 -71.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603006671.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.409 kcal (2) G-P(sol) polarization free energy of solvation -70.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds