Wall clock time and date at job start Wed Apr 1 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 120.00013 * 2 1 4 4 N 1.46497 * 109.46871 * 125.25716 * 3 2 1 5 5 C 1.36739 * 127.14005 * 275.26069 * 4 3 2 6 6 C 1.50702 * 126.34685 * 359.95414 * 5 4 3 7 7 H 1.09001 * 110.45331 * 357.38838 * 6 5 4 8 8 C 1.54504 * 110.51348 * 119.99502 * 6 5 4 9 9 C 1.54480 * 104.06319 * 118.64276 * 8 6 5 10 10 O 1.44432 * 104.80053 * 23.97884 * 9 8 6 11 11 C 1.44424 * 105.27376 * 319.48590 * 10 9 8 12 12 N 1.30296 * 107.30441 * 179.97438 * 5 4 3 13 13 N 1.28529 * 110.05604 * 359.72693 * 12 5 4 14 14 C 1.31219 * 109.85461 * 0.45590 * 13 12 5 15 15 N 1.38578 * 126.46545 * 179.81909 * 14 13 12 16 16 C 1.46957 * 111.00459 * 323.28999 * 15 14 13 17 17 C 1.53047 * 109.36578 * 183.18847 * 16 15 14 18 18 N 1.46953 * 109.36551 * 301.59793 * 17 16 15 19 19 C 1.46899 * 110.99848 * 183.18612 * 18 17 16 20 20 C 1.50712 * 109.47068 * 170.00063 * 19 18 17 21 21 H 1.08002 * 119.99524 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99630 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00577 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99305 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46802 * 90.00491 * 24 22 20 26 26 H 1.48503 * 109.47194 * 210.00040 * 24 22 20 27 27 H 1.48497 * 109.47503 * 330.00415 * 24 22 20 28 28 C 1.46954 * 110.88039 * 59.32291 * 18 17 16 29 29 C 1.46965 * 111.00158 * 87.09173 * 15 14 13 30 30 H 1.08007 * 119.99972 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00225 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00225 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46888 * 5.25627 * 3 2 1 34 34 H 1.08993 * 109.46903 * 245.25732 * 3 2 1 35 35 H 1.08998 * 110.51244 * 237.29035 * 8 6 5 36 36 H 1.09002 * 110.50765 * 359.86453 * 8 6 5 37 37 H 1.08994 * 110.37194 * 142.80838 * 9 8 6 38 38 H 1.08996 * 110.37594 * 265.14897 * 9 8 6 39 39 H 1.08998 * 110.37166 * 281.67695 * 11 10 9 40 40 H 1.08998 * 110.36638 * 159.34304 * 11 10 9 41 41 H 1.08997 * 109.48755 * 63.21866 * 16 15 14 42 42 H 1.08998 * 109.50197 * 303.16517 * 16 15 14 43 43 H 1.08998 * 109.48836 * 181.62446 * 17 16 15 44 44 H 1.09002 * 109.49024 * 61.56692 * 17 16 15 45 45 H 1.08996 * 109.47450 * 289.99883 * 19 18 17 46 46 H 1.08999 * 109.47223 * 50.00436 * 19 18 17 47 47 H 0.96997 * 120.00323 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.49322 * 60.64182 * 28 18 17 49 49 H 1.09001 * 109.48944 * 180.71232 * 28 18 17 50 50 H 1.09002 * 109.48666 * 296.77806 * 29 15 14 51 51 H 1.09000 * 109.48499 * 56.83584 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9981 1.3293 1.1279 5 6 2.7268 1.6949 2.4172 6 6 1.3959 2.1553 2.9538 7 1 0.6590 2.2064 2.1522 8 6 0.9095 1.2124 4.0770 9 6 0.8156 2.1258 5.3194 10 8 0.6492 3.4578 4.7863 11 6 1.5383 3.5268 3.6503 12 7 3.8323 1.5719 3.0958 13 7 4.7749 1.1512 2.3301 14 6 4.3199 0.9912 1.1097 15 7 5.0438 0.5554 0.0114 16 6 6.4175 1.0764 0.0453 17 6 7.1575 0.6392 -1.2210 18 7 7.1559 -0.8280 -1.3043 19 6 7.9231 -1.2900 -2.4687 20 6 8.1077 -2.7836 -2.3882 21 1 7.6957 -3.3345 -1.5556 22 6 8.8023 -3.4466 -3.3776 23 7 9.3043 -2.7757 -4.3912 24 14 9.0316 -5.2978 -3.2774 25 1 7.9011 -5.9744 -3.9627 26 1 10.3075 -5.6750 -3.9372 27 1 9.0685 -5.7157 -1.8530 28 6 5.7822 -1.3491 -1.3383 29 6 5.0421 -0.9119 -0.0720 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3589 2.1314 0.0941 34 1 2.6176 1.4047 -0.9333 35 1 -0.0689 0.7992 3.8319 36 1 1.6306 0.4119 4.2426 37 1 -0.0454 1.8505 5.9284 38 1 1.7320 2.0637 5.9062 39 1 2.5656 3.6796 3.9812 40 1 1.2325 4.3277 2.9773 41 1 6.9335 0.6845 0.9218 42 1 6.3926 2.1650 0.0944 43 1 8.1853 1.0002 -1.1845 44 1 6.6571 1.0537 -2.0961 45 1 7.3837 -1.0393 -3.3820 46 1 8.8984 -0.8034 -2.4775 47 1 9.7933 -3.2422 -5.0870 48 1 5.2661 -0.9571 -2.2148 49 1 5.8074 -2.4377 -1.3873 50 1 5.5425 -1.3265 0.8031 51 1 4.0142 -1.2728 -0.1085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871054297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:36 Heat of formation + Delta-G solvation = 79.894865 kcal Electronic energy + Delta-G solvation = -31373.099535 eV Core-core repulsion = 27310.010008 eV Total energy + Delta-G solvation = -4063.089528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.17864 -39.66173 -38.84735 -36.53640 -35.32432 -33.44887 -32.96975 -32.41991 -30.67780 -30.14580 -28.95937 -27.49318 -27.04484 -25.11704 -23.87981 -23.26932 -22.67128 -22.00812 -21.40685 -20.62417 -20.11184 -19.18037 -17.78562 -16.99342 -16.54246 -16.39389 -16.27698 -16.19225 -15.47479 -15.22942 -14.78935 -14.59641 -14.50309 -14.32410 -14.15052 -13.88419 -13.63410 -13.42059 -13.21679 -12.76630 -12.46807 -12.24546 -12.05789 -11.98219 -11.88903 -11.77156 -11.66037 -11.35428 -11.29077 -11.01297 -10.88834 -10.84458 -10.66083 -10.53322 -10.47959 -10.33330 -10.14844 -10.03303 -9.84391 -9.35289 -9.20956 -8.53148 -8.46388 -7.34090 -6.07128 -4.08896 1.43297 1.59401 2.26127 2.69516 3.28429 3.35380 3.39686 3.48537 3.69072 4.02280 4.12360 4.22933 4.29860 4.35502 4.38097 4.57765 4.70190 4.78703 4.81741 4.88438 4.95049 5.03675 5.14127 5.28468 5.30832 5.34553 5.36543 5.38664 5.42623 5.49869 5.52710 5.56060 5.66775 5.69671 5.72070 5.78536 5.89994 6.03478 6.06757 6.10639 6.30853 6.34106 6.41610 6.49055 6.52289 6.77767 7.20861 7.22568 7.27505 7.73695 8.00715 8.11248 8.46902 8.64566 8.98321 9.55669 11.03641 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002296 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.708613 B =12190.774651 C =12600.921008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.177 4.177 3 C 0.137 3.863 4 N -0.464 5.464 5 C 0.176 3.824 6 C -0.029 4.029 7 H 0.097 0.903 8 C -0.141 4.141 9 C 0.047 3.953 10 O -0.372 6.372 11 C 0.058 3.942 12 N -0.279 5.279 13 N -0.311 5.311 14 C 0.365 3.635 15 N -0.465 5.465 16 C 0.076 3.924 17 C 0.057 3.943 18 N -0.537 5.537 19 C 0.194 3.806 20 C -0.509 4.509 21 H 0.063 0.937 22 C 0.056 3.944 23 N -0.898 5.898 24 Si 0.897 3.103 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.273 1.273 28 C 0.070 3.930 29 C 0.068 3.932 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.032 0.968 45 H -0.007 1.007 46 H 0.032 0.968 47 H 0.262 0.738 48 H 0.031 0.969 49 H 0.094 0.906 50 H 0.056 0.944 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.401 10.785 11.751 26.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.196 4.196 3 C 0.015 3.985 4 N -0.156 5.156 5 C -0.091 4.091 6 C -0.050 4.050 7 H 0.116 0.884 8 C -0.179 4.179 9 C -0.030 4.030 10 O -0.291 6.291 11 C -0.020 4.020 12 N -0.119 5.119 13 N -0.155 5.155 14 C 0.009 3.991 15 N -0.191 5.191 16 C -0.051 4.051 17 C -0.072 4.072 18 N -0.263 5.263 19 C 0.070 3.930 20 C -0.548 4.548 21 H 0.081 0.919 22 C -0.146 4.146 23 N -0.537 5.537 24 Si 0.725 3.275 25 H -0.208 1.208 26 H -0.212 1.212 27 H -0.198 1.198 28 C -0.059 4.059 29 C -0.059 4.059 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.135 0.865 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.010 0.990 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.050 0.950 49 H 0.112 0.888 50 H 0.075 0.925 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -20.423 10.945 12.786 26.464 hybrid contribution -0.563 -1.281 -1.622 2.143 sum -20.986 9.664 11.164 25.660 Atomic orbital electron populations 1.23948 0.95381 1.02628 0.98059 1.23129 0.96315 0.98198 1.01962 1.20979 0.91666 0.96922 0.88951 1.46300 1.09528 1.49909 1.09907 1.24286 0.98373 1.05150 0.81315 1.20873 0.88928 0.96515 0.98716 0.88444 1.22969 1.02435 0.98688 0.93845 1.23441 1.02357 0.81545 0.95614 1.89131 1.63313 1.31813 1.44809 1.23458 0.95710 0.95101 0.87697 1.73960 0.95966 1.16384 1.25578 1.74729 1.23064 1.19276 0.98402 1.22617 0.83076 1.01549 0.91900 1.59001 1.15760 1.12035 1.32333 1.22204 0.84161 0.98955 0.99785 1.22120 0.99527 0.90651 0.94929 1.62300 1.11922 1.06043 1.46002 1.19715 0.92539 0.96071 0.84724 1.21139 1.34485 0.91915 1.07227 0.91893 1.24983 0.95638 0.98603 0.95326 1.69948 1.36736 1.35783 1.11230 0.86511 0.77491 0.85243 0.78259 1.20760 1.21221 1.19750 1.22004 0.88939 1.01364 0.93583 1.22414 1.00192 0.82845 1.00475 0.87479 0.88116 0.86481 0.88647 0.86697 0.89989 0.89594 0.88816 0.91419 0.90599 0.88674 0.91685 0.90764 0.90057 0.94968 0.98959 0.94974 0.92876 0.95033 0.88786 0.92536 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 14.32 29.02 0.42 -0.51 16 2 C -0.18 -1.36 9.85 -36.02 -0.35 -1.72 16 3 C 0.14 1.13 6.26 -5.19 -0.03 1.09 16 4 N -0.46 -5.34 2.79 -115.37 -0.32 -5.66 16 5 C 0.18 2.04 6.42 -154.01 -0.99 1.05 16 6 C -0.03 -0.24 3.53 -90.21 -0.32 -0.56 16 7 H 0.10 0.61 7.13 -51.93 -0.37 0.24 16 8 C -0.14 -1.06 6.73 -25.17 -0.17 -1.23 16 9 C 0.05 0.36 7.63 37.93 0.29 0.65 16 10 O -0.37 -3.55 11.65 -35.23 -0.41 -3.96 16 11 C 0.06 0.50 7.17 37.93 0.27 0.77 16 12 N -0.28 -4.16 11.90 32.99 0.39 -3.77 16 13 N -0.31 -5.16 11.66 30.31 0.35 -4.80 16 14 C 0.36 5.31 6.74 -318.88 -2.15 3.17 16 15 N -0.47 -6.92 4.70 -174.36 -0.82 -7.74 16 16 C 0.08 1.19 5.28 -3.77 -0.02 1.17 16 17 C 0.06 1.00 5.61 -3.77 -0.02 0.98 16 18 N -0.54 -11.20 4.70 -235.91 -1.11 -12.31 16 19 C 0.19 4.91 4.72 -4.97 -0.02 4.88 16 20 C -0.51 -13.90 8.47 -34.43 -0.29 -14.20 16 21 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 22 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 23 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 24 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.07 1.29 5.43 -3.77 -0.02 1.26 16 29 C 0.07 1.05 5.55 -3.76 -0.02 1.03 16 30 H 0.11 0.54 8.06 -52.48 -0.42 0.12 16 31 H 0.10 0.42 7.84 -52.49 -0.41 0.00 16 32 H 0.12 1.06 7.28 -52.49 -0.38 0.68 16 33 H 0.10 0.55 7.11 -51.93 -0.37 0.18 16 34 H 0.11 1.01 8.11 -51.93 -0.42 0.59 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.78 7.73 -51.93 -0.40 0.37 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.76 7.64 -51.93 -0.40 0.37 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.12 7.98 -51.93 -0.41 0.70 16 42 H 0.07 1.07 8.13 -51.93 -0.42 0.65 16 43 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 44 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 45 H -0.01 -0.20 8.12 -51.93 -0.42 -0.62 16 46 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 50 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.07 0.93 7.35 -51.93 -0.38 0.55 16 LS Contribution 408.49 15.07 6.16 6.16 Total: -1.00 -32.14 408.49 -12.04 -44.18 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -8.47 Total: -2.19 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -3.53 Total: -0.69 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: -0.77 Total: -59.74 kcal Atomic # 8 Polarization: -3.55 SS G_CDS: -0.41 Total: -3.96 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.14 -12.04 -44.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871054297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.077 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds