Wall clock time and date at job start Wed Apr 1 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50705 * 120.00013 * 2 1 4 4 N 1.46497 * 109.46871 * 125.25716 * 3 2 1 5 5 C 1.36739 * 127.14005 * 275.26069 * 4 3 2 6 6 C 1.50702 * 126.34685 * 359.95414 * 5 4 3 7 7 H 1.09001 * 110.45331 * 357.38838 * 6 5 4 8 8 C 1.54504 * 110.51348 * 119.99502 * 6 5 4 9 9 C 1.54480 * 104.06319 * 118.64276 * 8 6 5 10 10 O 1.44432 * 104.80053 * 23.97884 * 9 8 6 11 11 C 1.44424 * 105.27376 * 319.48590 * 10 9 8 12 12 N 1.30296 * 107.30441 * 179.97438 * 5 4 3 13 13 N 1.28529 * 110.05604 * 359.72693 * 12 5 4 14 14 C 1.31219 * 109.85461 * 0.45590 * 13 12 5 15 15 N 1.38578 * 126.46545 * 179.81909 * 14 13 12 16 16 C 1.46957 * 111.00459 * 323.28999 * 15 14 13 17 17 C 1.53047 * 109.36578 * 183.18847 * 16 15 14 18 18 N 1.46953 * 109.36551 * 301.59793 * 17 16 15 19 19 C 1.46899 * 110.99848 * 183.18612 * 18 17 16 20 20 C 1.50712 * 109.47068 * 170.00063 * 19 18 17 21 21 H 1.08002 * 119.99524 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99630 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00577 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99305 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46802 * 90.00491 * 24 22 20 26 26 H 1.48503 * 109.47194 * 210.00040 * 24 22 20 27 27 H 1.48497 * 109.47503 * 330.00415 * 24 22 20 28 28 C 1.46954 * 110.88039 * 59.32291 * 18 17 16 29 29 C 1.46965 * 111.00158 * 87.09173 * 15 14 13 30 30 H 1.08007 * 119.99972 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.00225 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.00225 * 179.97438 * 2 1 3 33 33 H 1.09000 * 109.46888 * 5.25627 * 3 2 1 34 34 H 1.08993 * 109.46903 * 245.25732 * 3 2 1 35 35 H 1.08998 * 110.51244 * 237.29035 * 8 6 5 36 36 H 1.09002 * 110.50765 * 359.86453 * 8 6 5 37 37 H 1.08994 * 110.37194 * 142.80838 * 9 8 6 38 38 H 1.08996 * 110.37594 * 265.14897 * 9 8 6 39 39 H 1.08998 * 110.37166 * 281.67695 * 11 10 9 40 40 H 1.08998 * 110.36638 * 159.34304 * 11 10 9 41 41 H 1.08997 * 109.48755 * 63.21866 * 16 15 14 42 42 H 1.08998 * 109.50197 * 303.16517 * 16 15 14 43 43 H 1.08998 * 109.48836 * 181.62446 * 17 16 15 44 44 H 1.09002 * 109.49024 * 61.56692 * 17 16 15 45 45 H 1.08996 * 109.47450 * 289.99883 * 19 18 17 46 46 H 1.08999 * 109.47223 * 50.00436 * 19 18 17 47 47 H 0.96997 * 120.00323 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.49322 * 60.64182 * 28 18 17 49 49 H 1.09001 * 109.48944 * 180.71232 * 28 18 17 50 50 H 1.09002 * 109.48666 * 296.77806 * 29 15 14 51 51 H 1.09000 * 109.48499 * 56.83584 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9981 1.3293 1.1279 5 6 2.7268 1.6949 2.4172 6 6 1.3959 2.1553 2.9538 7 1 0.6590 2.2064 2.1522 8 6 0.9095 1.2124 4.0770 9 6 0.8156 2.1258 5.3194 10 8 0.6492 3.4578 4.7863 11 6 1.5383 3.5268 3.6503 12 7 3.8323 1.5719 3.0958 13 7 4.7749 1.1512 2.3301 14 6 4.3199 0.9912 1.1097 15 7 5.0438 0.5554 0.0114 16 6 6.4175 1.0764 0.0453 17 6 7.1575 0.6392 -1.2210 18 7 7.1559 -0.8280 -1.3043 19 6 7.9231 -1.2900 -2.4687 20 6 8.1077 -2.7836 -2.3882 21 1 7.6957 -3.3345 -1.5556 22 6 8.8023 -3.4466 -3.3776 23 7 9.3043 -2.7757 -4.3912 24 14 9.0316 -5.2978 -3.2774 25 1 7.9011 -5.9744 -3.9627 26 1 10.3075 -5.6750 -3.9372 27 1 9.0685 -5.7157 -1.8530 28 6 5.7822 -1.3491 -1.3383 29 6 5.0421 -0.9119 -0.0720 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3589 2.1314 0.0941 34 1 2.6176 1.4047 -0.9333 35 1 -0.0689 0.7992 3.8319 36 1 1.6306 0.4119 4.2426 37 1 -0.0454 1.8505 5.9284 38 1 1.7320 2.0637 5.9062 39 1 2.5656 3.6796 3.9812 40 1 1.2325 4.3277 2.9773 41 1 6.9335 0.6845 0.9218 42 1 6.3926 2.1650 0.0944 43 1 8.1853 1.0002 -1.1845 44 1 6.6571 1.0537 -2.0961 45 1 7.3837 -1.0393 -3.3820 46 1 8.8984 -0.8034 -2.4775 47 1 9.7933 -3.2422 -5.0870 48 1 5.2661 -0.9571 -2.2148 49 1 5.8074 -2.4377 -1.3873 50 1 5.5425 -1.3265 0.8031 51 1 4.0142 -1.2728 -0.1085 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871054297.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:35 Heat of formation + Delta-G solvation = 60.031322 kcal Electronic energy + Delta-G solvation = -31373.960883 eV Core-core repulsion = 27310.010008 eV Total energy + Delta-G solvation = -4063.950875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.18722 -40.49428 -40.08507 -37.28682 -36.84772 -34.67568 -34.11407 -33.59342 -32.09251 -31.06004 -30.12304 -28.87242 -27.83788 -26.77372 -24.84694 -24.47424 -23.73828 -23.32615 -22.55779 -21.55094 -20.77909 -20.50787 -18.69743 -18.49285 -17.90008 -17.37374 -17.15728 -17.05634 -16.67381 -16.11583 -16.07216 -15.96226 -15.68082 -15.50525 -15.31495 -15.17224 -14.78675 -14.60243 -14.06741 -13.97029 -13.53794 -13.38528 -13.23717 -13.07660 -12.88548 -12.71051 -12.68396 -12.60142 -12.53358 -12.36466 -12.34795 -12.24348 -12.19041 -11.94543 -11.68636 -11.58835 -11.26692 -11.16903 -10.82531 -10.62405 -10.55844 -10.42632 -9.69543 -9.08073 -8.20947 -6.30804 0.54601 0.85488 1.40795 1.42555 1.48638 1.53873 1.64116 2.39698 2.56123 2.84624 3.10835 3.19108 3.30992 3.49362 3.59774 3.66022 3.70209 3.79133 3.95465 3.99079 4.03818 4.10657 4.22216 4.24414 4.26106 4.29386 4.35171 4.41425 4.51032 4.55830 4.68964 4.70355 4.80562 4.83621 4.85218 4.89447 4.91636 4.94775 4.99336 5.00946 5.03855 5.18157 5.23198 5.42599 5.51719 5.55582 5.63522 5.65764 5.74587 6.02683 6.11803 6.27823 6.56299 6.84385 7.38851 7.60471 8.90041 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019815 B = 0.002296 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.708613 B =12190.774651 C =12600.921008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.204 4.204 3 C 0.133 3.867 4 N -0.455 5.455 5 C 0.197 3.803 6 C -0.027 4.027 7 H 0.130 0.870 8 C -0.136 4.136 9 C 0.044 3.956 10 O -0.384 6.384 11 C 0.059 3.941 12 N -0.315 5.315 13 N -0.347 5.347 14 C 0.351 3.649 15 N -0.457 5.457 16 C 0.088 3.912 17 C 0.060 3.940 18 N -0.549 5.549 19 C 0.211 3.789 20 C -0.523 4.523 21 H 0.062 0.938 22 C 0.003 3.997 23 N -0.933 5.933 24 Si 0.967 3.033 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.267 1.267 28 C 0.076 3.924 29 C 0.083 3.917 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.117 0.883 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.035 0.965 45 H -0.032 1.032 46 H 0.006 0.994 47 H 0.265 0.735 48 H 0.032 0.968 49 H 0.079 0.921 50 H 0.038 0.962 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.763 10.871 12.136 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.223 4.223 3 C 0.013 3.987 4 N -0.147 5.147 5 C -0.071 4.071 6 C -0.048 4.048 7 H 0.148 0.852 8 C -0.174 4.174 9 C -0.032 4.032 10 O -0.303 6.303 11 C -0.019 4.019 12 N -0.155 5.155 13 N -0.191 5.191 14 C -0.006 4.006 15 N -0.182 5.182 16 C -0.039 4.039 17 C -0.068 4.068 18 N -0.274 5.274 19 C 0.085 3.915 20 C -0.562 4.562 21 H 0.080 0.920 22 C -0.195 4.195 23 N -0.573 5.573 24 Si 0.792 3.208 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.192 1.192 28 C -0.053 4.053 29 C -0.044 4.044 30 H 0.132 0.868 31 H 0.144 0.856 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.135 0.865 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.053 0.947 45 H -0.015 1.015 46 H 0.024 0.976 47 H 0.073 0.927 48 H 0.050 0.950 49 H 0.097 0.903 50 H 0.057 0.943 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.816 11.043 13.182 29.376 hybrid contribution 0.368 -1.241 -1.693 2.131 sum -23.448 9.802 11.490 27.891 Atomic orbital electron populations 1.24205 0.94522 1.04170 0.94412 1.22948 0.97013 0.97048 1.05292 1.21282 0.91525 0.98579 0.87363 1.46494 1.08764 1.48747 1.10735 1.24913 0.98703 1.02583 0.80926 1.21124 0.87589 0.96286 0.99785 0.85216 1.22958 1.03172 0.97915 0.93393 1.23551 1.02819 0.80991 0.95887 1.89126 1.63272 1.32734 1.45180 1.23468 0.94610 0.95979 0.87866 1.73894 0.97000 1.18255 1.26358 1.74626 1.24654 1.20301 0.99476 1.22453 0.84354 1.02577 0.91230 1.58966 1.15191 1.11315 1.32775 1.22017 0.84432 0.99781 0.97672 1.22133 1.00096 0.88535 0.96076 1.62196 1.13231 1.08275 1.43685 1.19342 0.91602 0.95261 0.85314 1.21434 1.34478 0.92994 1.07247 0.91976 1.25872 0.95195 1.03555 0.94856 1.70070 1.37444 1.37787 1.11997 0.85416 0.77663 0.79275 0.78462 1.19609 1.20859 1.19180 1.21928 0.87816 1.00433 0.95128 1.22200 1.00781 0.83558 0.97888 0.86802 0.85621 0.88553 0.85282 0.87476 0.87360 0.91486 0.86620 0.92723 0.92883 0.86487 0.93382 0.89069 0.90052 0.94684 1.01454 0.97555 0.92662 0.95012 0.90287 0.94334 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 14.32 67.78 0.97 -0.01 16 2 C -0.20 -2.59 9.85 25.65 0.25 -2.33 16 3 C 0.13 1.81 6.26 85.64 0.54 2.35 16 4 N -0.46 -9.73 2.79 -518.91 -1.45 -11.18 16 5 C 0.20 4.26 6.42 137.64 0.88 5.14 16 6 C -0.03 -0.36 3.53 -10.53 -0.04 -0.40 16 7 H 0.13 0.94 7.13 -2.39 -0.02 0.92 16 8 C -0.14 -1.69 6.73 31.61 0.21 -1.47 16 9 C 0.04 0.59 7.63 72.49 0.55 1.14 16 10 O -0.38 -6.48 11.65 -148.98 -1.74 -8.21 16 11 C 0.06 0.87 7.17 72.48 0.52 1.39 16 12 N -0.32 -9.42 11.90 -49.53 -0.59 -10.01 16 13 N -0.35 -11.65 11.66 -58.01 -0.68 -12.32 16 14 C 0.35 10.10 6.74 260.11 1.75 11.85 16 15 N -0.46 -13.54 4.70 -705.54 -3.31 -16.85 16 16 C 0.09 2.80 5.28 86.31 0.46 3.26 16 17 C 0.06 2.17 5.61 86.31 0.48 2.65 16 18 N -0.55 -23.66 4.70 -900.29 -4.23 -27.89 16 19 C 0.21 11.10 4.72 85.56 0.40 11.50 16 20 C -0.52 -29.28 8.47 25.60 0.22 -29.06 16 21 H 0.06 3.42 7.13 -2.91 -0.02 3.39 16 22 C 0.00 0.20 5.46 84.66 0.46 0.66 16 23 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 24 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.08 2.84 5.43 86.31 0.47 3.30 16 29 C 0.08 2.59 5.55 86.31 0.48 3.07 16 30 H 0.11 0.71 8.06 -2.91 -0.02 0.69 16 31 H 0.13 0.31 7.84 -2.91 -0.02 0.29 16 32 H 0.10 1.62 7.28 -2.91 -0.02 1.60 16 33 H 0.13 0.87 7.11 -2.39 -0.02 0.85 16 34 H 0.11 1.66 8.11 -2.39 -0.02 1.64 16 35 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.07 1.12 7.73 -2.39 -0.02 1.10 16 37 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.05 1.04 7.64 -2.39 -0.02 1.02 16 40 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.05 1.70 7.98 -2.39 -0.02 1.68 16 42 H 0.09 2.60 8.13 -2.39 -0.02 2.58 16 43 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H -0.03 -1.82 8.12 -2.39 -0.02 -1.84 16 46 H 0.01 0.36 8.03 -2.39 -0.02 0.34 16 47 H 0.26 14.82 8.31 -92.71 -0.77 14.04 16 48 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.08 3.18 6.79 -2.39 -0.02 3.17 16 50 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 51 H 0.09 2.46 7.35 -2.39 -0.02 2.44 16 Total: -1.00 -72.32 408.49 -0.16 -72.49 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.91 Total: 10.26 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 8.61 Total: 13.04 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -9.97 Total: -133.48 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -1.74 Total: -8.21 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -72.32 -0.16 -72.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871054297.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.521 kcal (2) G-P(sol) polarization free energy of solvation -72.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds