Wall clock time and date at job start Wed Apr 1 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00165 * 2 1 4 4 N 1.46504 * 109.46859 * 124.99999 * 3 2 1 5 5 C 1.36739 * 127.13493 * 88.29401 * 4 3 2 6 6 C 1.50698 * 126.34696 * 359.97438 * 5 4 3 7 7 H 1.08996 * 110.80506 * 3.34229 * 6 5 4 8 8 C 1.54813 * 110.90594 * 239.71281 * 6 5 4 9 9 C 1.54101 * 104.18620 * 220.92067 * 8 6 5 10 10 O 1.43745 * 107.29575 * 357.97615 * 9 8 6 11 11 C 1.44381 * 106.97295 * 26.50862 * 10 9 8 12 12 N 1.30293 * 107.30047 * 179.73233 * 5 4 3 13 13 N 1.28527 * 110.05686 * 0.26226 * 12 5 4 14 14 C 1.31208 * 109.85832 * 359.97438 * 13 12 5 15 15 N 1.38594 * 126.47055 * 180.02562 * 14 13 12 16 16 C 1.46957 * 110.99945 * 62.19417 * 15 14 13 17 17 C 1.53054 * 109.36157 * 176.81108 * 16 15 14 18 18 N 1.46958 * 109.36538 * 58.40287 * 17 16 15 19 19 C 1.46898 * 110.99968 * 176.81208 * 18 17 16 20 20 C 1.50697 * 109.46940 * 293.79405 * 19 18 17 21 21 H 1.08008 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00153 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99907 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99786 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47278 * 89.99646 * 24 22 20 26 26 H 1.48500 * 109.47267 * 209.99719 * 24 22 20 27 27 H 1.48500 * 109.47266 * 329.99538 * 24 22 20 28 28 C 1.46957 * 110.87656 * 300.67797 * 18 17 16 29 29 C 1.46958 * 110.99987 * 298.39117 * 15 14 13 30 30 H 1.08001 * 119.99764 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00252 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99764 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47129 * 5.00426 * 3 2 1 34 34 H 1.08998 * 109.47435 * 244.99641 * 3 2 1 35 35 H 1.08998 * 110.48778 * 339.59958 * 8 6 5 36 36 H 1.08998 * 110.48694 * 102.11503 * 8 6 5 37 37 H 1.09003 * 109.87296 * 117.40035 * 9 8 6 38 38 H 1.08998 * 109.88254 * 238.54657 * 9 8 6 39 39 H 1.08999 * 110.61282 * 201.43544 * 11 10 9 40 40 H 1.09003 * 110.61592 * 78.44734 * 11 10 9 41 41 H 1.08997 * 109.48492 * 296.78059 * 16 15 14 42 42 H 1.09003 * 109.48779 * 56.84381 * 16 15 14 43 43 H 1.09001 * 109.48874 * 298.43352 * 17 16 15 44 44 H 1.09002 * 109.50352 * 178.37461 * 17 16 15 45 45 H 1.08990 * 109.47098 * 53.79444 * 19 18 17 46 46 H 1.08996 * 109.47000 * 173.80011 * 19 18 17 47 47 H 0.97003 * 119.99147 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.49253 * 299.35060 * 28 18 17 49 49 H 1.09003 * 109.50256 * 179.29981 * 28 18 17 50 50 H 1.08999 * 109.48817 * 303.16251 * 29 15 14 51 51 H 1.09001 * 109.48586 * 63.20164 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.2810 0.8709 1.1529 6 6 5.0201 0.2319 0.0056 7 1 4.4076 0.2294 -0.8961 8 6 5.4721 -1.2031 0.3704 9 6 6.8931 -1.3120 -0.2157 10 8 7.1754 -0.0717 -0.8853 11 6 6.3733 0.9444 -0.2460 12 7 4.7517 1.0915 2.3476 13 7 3.8546 1.6510 3.0785 14 6 2.7546 1.8193 2.3833 15 7 1.5745 2.3896 2.8337 16 6 1.7824 3.7909 3.2245 17 6 0.4437 4.4060 3.6393 18 7 -0.1250 3.6311 4.7510 19 6 -1.3758 4.2355 5.2284 20 6 -1.0812 5.5784 5.8456 21 1 -0.0663 5.9462 5.8795 22 6 -2.1074 6.3379 6.3662 23 7 -1.8503 7.5101 6.9044 24 14 -3.8628 5.7021 6.3070 25 1 -4.1485 4.9217 7.5378 26 1 -4.8020 6.8490 6.2189 27 1 -4.0336 4.8300 5.1172 28 6 -0.3328 2.2297 4.3602 29 6 1.0058 1.6146 3.9453 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6214 1.4026 -0.9313 35 1 5.4948 -1.3324 1.4525 36 1 4.8111 -1.9392 -0.0871 37 1 7.6135 -1.4725 0.5864 38 1 6.9383 -2.1362 -0.9276 39 1 6.2394 1.8002 -0.9076 40 1 6.8254 1.2537 0.6964 41 1 2.4783 3.8353 4.0623 42 1 2.1922 4.3467 2.3811 43 1 -0.2433 4.3862 2.7933 44 1 0.5998 5.4369 3.9571 45 1 -2.0606 4.3633 4.3902 46 1 -1.8321 3.5850 5.9745 47 1 -2.5723 8.0442 7.2710 48 1 -1.0287 2.1852 3.5224 49 1 -0.7428 1.6738 5.2034 50 1 0.8495 0.5838 3.6275 51 1 1.6930 1.6341 4.7912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871054298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:41 Heat of formation + Delta-G solvation = 84.451025 kcal Electronic energy + Delta-G solvation = -31353.362583 eV Core-core repulsion = 27290.470626 eV Total energy + Delta-G solvation = -4062.891958 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.19798 -39.70696 -38.91125 -36.50082 -35.42113 -33.53820 -32.91475 -32.39268 -30.71381 -30.29730 -29.17414 -27.78604 -27.12479 -25.18154 -23.91377 -23.33749 -22.67039 -21.77189 -21.17736 -20.79573 -20.12564 -19.22133 -17.78137 -17.13453 -16.81331 -16.47501 -16.40035 -16.20741 -15.44042 -15.29688 -14.77444 -14.60683 -14.50735 -14.25668 -13.96211 -13.92508 -13.85727 -13.62368 -13.16158 -12.84976 -12.62247 -12.36669 -12.14076 -12.04248 -11.95977 -11.87631 -11.72222 -11.60896 -11.34178 -11.12640 -10.96475 -10.86824 -10.67533 -10.50407 -10.34489 -10.24756 -10.08715 -10.01435 -9.89943 -9.32597 -9.06086 -8.77560 -8.60102 -7.46934 -6.08487 -4.06397 1.41867 1.59604 2.24571 2.65800 3.25436 3.33129 3.33866 3.40911 3.68412 3.94820 4.09798 4.26841 4.27802 4.38352 4.40615 4.53495 4.62134 4.65238 4.69661 4.78382 4.91327 5.09510 5.13614 5.22629 5.30354 5.31438 5.33321 5.39344 5.41213 5.44541 5.46066 5.50617 5.60395 5.68206 5.71977 5.78042 5.86194 5.97108 6.07476 6.16456 6.16787 6.34114 6.39580 6.45577 6.50284 6.67500 6.82611 6.94775 7.20536 7.53067 7.81395 7.94852 8.60409 8.60590 8.99743 9.52714 11.04463 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002323 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.282920 B =12051.950197 C =12711.299137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.189 4.189 3 C 0.140 3.860 4 N -0.459 5.459 5 C 0.177 3.823 6 C -0.031 4.031 7 H 0.101 0.899 8 C -0.144 4.144 9 C 0.049 3.951 10 O -0.375 6.375 11 C 0.061 3.939 12 N -0.279 5.279 13 N -0.305 5.305 14 C 0.363 3.637 15 N -0.468 5.468 16 C 0.069 3.931 17 C 0.070 3.930 18 N -0.528 5.528 19 C 0.164 3.836 20 C -0.511 4.511 21 H 0.081 0.919 22 C 0.069 3.931 23 N -0.899 5.899 24 Si 0.875 3.125 25 H -0.276 1.276 26 H -0.286 1.286 27 H -0.268 1.268 28 C 0.056 3.944 29 C 0.075 3.925 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.100 0.900 45 H -0.010 1.010 46 H 0.025 0.975 47 H 0.264 0.736 48 H 0.032 0.968 49 H 0.080 0.920 50 H 0.070 0.930 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.049 -18.742 -19.609 28.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.208 4.208 3 C 0.018 3.982 4 N -0.152 5.152 5 C -0.090 4.090 6 C -0.053 4.053 7 H 0.119 0.881 8 C -0.182 4.182 9 C -0.027 4.027 10 O -0.293 6.293 11 C -0.016 4.016 12 N -0.120 5.120 13 N -0.149 5.149 14 C 0.007 3.993 15 N -0.195 5.195 16 C -0.058 4.058 17 C -0.059 4.059 18 N -0.252 5.252 19 C 0.038 3.962 20 C -0.549 4.549 21 H 0.099 0.901 22 C -0.133 4.133 23 N -0.537 5.537 24 Si 0.702 3.298 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.193 1.193 28 C -0.073 4.073 29 C -0.052 4.052 30 H 0.124 0.876 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.118 0.882 45 H 0.008 0.992 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.051 0.949 49 H 0.098 0.902 50 H 0.089 0.911 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.041 -18.483 -18.518 28.398 hybrid contribution -2.351 -0.358 -0.887 2.538 sum 8.690 -18.841 -19.405 28.408 Atomic orbital electron populations 1.24022 0.95538 1.02839 0.95873 1.22962 0.96429 0.97460 1.03930 1.20952 0.91978 0.98252 0.87061 1.46389 1.11972 1.45319 1.11493 1.24205 0.83290 1.03726 0.97797 1.21055 0.96397 0.95035 0.92778 0.88104 1.23006 0.96993 0.94859 1.03384 1.23165 0.94985 0.87600 0.96995 1.88891 1.65518 1.17503 1.57427 1.23589 0.87473 0.91418 0.99167 1.73983 1.23501 1.14674 0.99819 1.74733 0.98064 1.17141 1.24943 1.22513 0.93488 1.00008 0.83306 1.59035 1.18537 1.04080 1.37818 1.22370 0.99389 0.84091 0.99939 1.22058 0.92736 0.99037 0.92079 1.62112 1.30333 0.99987 1.32815 1.20156 0.85876 0.95876 0.94330 1.21016 0.96387 0.99765 1.37753 0.90076 1.24903 0.98743 0.94773 0.94901 1.69898 1.32579 1.11551 1.39719 0.86866 0.85264 0.78700 0.78928 1.20136 1.21217 1.19323 1.22128 0.94267 0.91853 0.99019 1.22210 0.96709 0.95525 0.90763 0.87641 0.87702 0.87007 0.87342 0.88369 0.89298 0.90026 0.91717 0.89569 0.88514 0.90282 0.91879 0.90952 0.95111 0.88163 0.99247 0.95665 0.92629 0.94949 0.90204 0.91137 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 14.32 29.01 0.42 -0.58 16 2 C -0.19 -1.37 9.85 -36.03 -0.35 -1.72 16 3 C 0.14 1.10 6.33 -5.19 -0.03 1.07 16 4 N -0.46 -5.16 2.79 -115.37 -0.32 -5.48 16 5 C 0.18 2.00 6.63 -154.02 -1.02 0.98 16 6 C -0.03 -0.25 3.52 -89.76 -0.32 -0.56 16 7 H 0.10 0.60 7.07 -51.93 -0.37 0.23 16 8 C -0.14 -1.00 6.59 -25.20 -0.17 -1.16 16 9 C 0.05 0.34 7.70 37.73 0.29 0.63 16 10 O -0.37 -3.45 11.52 -35.23 -0.41 -3.85 16 11 C 0.06 0.51 7.16 38.21 0.27 0.79 16 12 N -0.28 -4.12 11.87 32.99 0.39 -3.73 16 13 N -0.31 -5.04 12.19 30.32 0.37 -4.67 16 14 C 0.36 5.20 6.45 -318.87 -2.06 3.14 16 15 N -0.47 -6.77 4.73 -174.35 -0.82 -7.59 16 16 C 0.07 1.09 5.53 -3.76 -0.02 1.07 16 17 C 0.07 1.27 5.43 -3.76 -0.02 1.25 16 18 N -0.53 -10.63 4.70 -235.92 -1.11 -11.74 16 19 C 0.16 3.83 3.79 -4.98 -0.02 3.81 16 20 C -0.51 -14.13 9.03 -34.44 -0.31 -14.45 16 21 H 0.08 2.45 7.37 -52.48 -0.39 2.06 16 22 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 23 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 24 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 28 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 29 C 0.08 1.11 5.53 -3.77 -0.02 1.09 16 30 H 0.11 0.75 7.84 -52.49 -0.41 0.33 16 31 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.11 0.90 7.79 -51.93 -0.40 0.50 16 34 H 0.10 0.53 7.30 -51.93 -0.38 0.16 16 35 H 0.09 0.76 7.79 -51.93 -0.40 0.35 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 42 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.10 2.04 6.79 -51.93 -0.35 1.69 16 45 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 46 H 0.03 0.59 7.45 -51.93 -0.39 0.21 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 50 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 51 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 407.23 15.07 6.14 6.14 Total: -1.00 -32.83 407.23 -11.67 -44.50 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.53 Total: -1.68 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -3.48 Total: -1.89 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.72 Total: -59.57 kcal Atomic # 8 Polarization: -3.45 SS G_CDS: -0.41 Total: -3.85 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.83 -11.67 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871054298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.947 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds