Wall clock time and date at job start Wed Apr 1 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 120.00165 * 2 1 4 4 N 1.46504 * 109.46859 * 124.99999 * 3 2 1 5 5 C 1.36739 * 127.13493 * 88.29401 * 4 3 2 6 6 C 1.50698 * 126.34696 * 359.97438 * 5 4 3 7 7 H 1.08996 * 110.80506 * 3.34229 * 6 5 4 8 8 C 1.54813 * 110.90594 * 239.71281 * 6 5 4 9 9 C 1.54101 * 104.18620 * 220.92067 * 8 6 5 10 10 O 1.43745 * 107.29575 * 357.97615 * 9 8 6 11 11 C 1.44381 * 106.97295 * 26.50862 * 10 9 8 12 12 N 1.30293 * 107.30047 * 179.73233 * 5 4 3 13 13 N 1.28527 * 110.05686 * 0.26226 * 12 5 4 14 14 C 1.31208 * 109.85832 * 359.97438 * 13 12 5 15 15 N 1.38594 * 126.47055 * 180.02562 * 14 13 12 16 16 C 1.46957 * 110.99945 * 62.19417 * 15 14 13 17 17 C 1.53054 * 109.36157 * 176.81108 * 16 15 14 18 18 N 1.46958 * 109.36538 * 58.40287 * 17 16 15 19 19 C 1.46898 * 110.99968 * 176.81208 * 18 17 16 20 20 C 1.50697 * 109.46940 * 293.79405 * 19 18 17 21 21 H 1.08008 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.37877 * 120.00153 * 179.97438 * 20 19 18 23 23 N 1.31519 * 119.99907 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99786 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47278 * 89.99646 * 24 22 20 26 26 H 1.48500 * 109.47267 * 209.99719 * 24 22 20 27 27 H 1.48500 * 109.47266 * 329.99538 * 24 22 20 28 28 C 1.46957 * 110.87656 * 300.67797 * 18 17 16 29 29 C 1.46958 * 110.99987 * 298.39117 * 15 14 13 30 30 H 1.08001 * 119.99764 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00252 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.99764 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47129 * 5.00426 * 3 2 1 34 34 H 1.08998 * 109.47435 * 244.99641 * 3 2 1 35 35 H 1.08998 * 110.48778 * 339.59958 * 8 6 5 36 36 H 1.08998 * 110.48694 * 102.11503 * 8 6 5 37 37 H 1.09003 * 109.87296 * 117.40035 * 9 8 6 38 38 H 1.08998 * 109.88254 * 238.54657 * 9 8 6 39 39 H 1.08999 * 110.61282 * 201.43544 * 11 10 9 40 40 H 1.09003 * 110.61592 * 78.44734 * 11 10 9 41 41 H 1.08997 * 109.48492 * 296.78059 * 16 15 14 42 42 H 1.09003 * 109.48779 * 56.84381 * 16 15 14 43 43 H 1.09001 * 109.48874 * 298.43352 * 17 16 15 44 44 H 1.09002 * 109.50352 * 178.37461 * 17 16 15 45 45 H 1.08990 * 109.47098 * 53.79444 * 19 18 17 46 46 H 1.08996 * 109.47000 * 173.80011 * 19 18 17 47 47 H 0.97003 * 119.99147 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.49253 * 299.35060 * 28 18 17 49 49 H 1.09003 * 109.50256 * 179.29981 * 28 18 17 50 50 H 1.08999 * 109.48817 * 303.16251 * 29 15 14 51 51 H 1.09001 * 109.48586 * 63.20164 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1315 5 6 4.2810 0.8709 1.1529 6 6 5.0201 0.2319 0.0056 7 1 4.4076 0.2294 -0.8961 8 6 5.4721 -1.2031 0.3704 9 6 6.8931 -1.3120 -0.2157 10 8 7.1754 -0.0717 -0.8853 11 6 6.3733 0.9444 -0.2460 12 7 4.7517 1.0915 2.3476 13 7 3.8546 1.6510 3.0785 14 6 2.7546 1.8193 2.3833 15 7 1.5745 2.3896 2.8337 16 6 1.7824 3.7909 3.2245 17 6 0.4437 4.4060 3.6393 18 7 -0.1250 3.6311 4.7510 19 6 -1.3758 4.2355 5.2284 20 6 -1.0812 5.5784 5.8456 21 1 -0.0663 5.9462 5.8795 22 6 -2.1074 6.3379 6.3662 23 7 -1.8503 7.5101 6.9044 24 14 -3.8628 5.7021 6.3070 25 1 -4.1485 4.9217 7.5378 26 1 -4.8020 6.8490 6.2189 27 1 -4.0336 4.8300 5.1172 28 6 -0.3328 2.2297 4.3602 29 6 1.0058 1.6146 3.9453 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3587 2.1316 0.0896 34 1 2.6214 1.4026 -0.9313 35 1 5.4948 -1.3324 1.4525 36 1 4.8111 -1.9392 -0.0871 37 1 7.6135 -1.4725 0.5864 38 1 6.9383 -2.1362 -0.9276 39 1 6.2394 1.8002 -0.9076 40 1 6.8254 1.2537 0.6964 41 1 2.4783 3.8353 4.0623 42 1 2.1922 4.3467 2.3811 43 1 -0.2433 4.3862 2.7933 44 1 0.5998 5.4369 3.9571 45 1 -2.0606 4.3633 4.3902 46 1 -1.8321 3.5850 5.9745 47 1 -2.5723 8.0442 7.2710 48 1 -1.0287 2.1852 3.5224 49 1 -0.7428 1.6738 5.2034 50 1 0.8495 0.5838 3.6275 51 1 1.6930 1.6341 4.7912 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871054298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:58:40 Heat of formation + Delta-G solvation = 63.109486 kcal Electronic energy + Delta-G solvation = -31354.288022 eV Core-core repulsion = 27290.470626 eV Total energy + Delta-G solvation = -4063.817396 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -44.19099 -40.49163 -40.11242 -37.24731 -36.86477 -34.64434 -34.18863 -33.56203 -32.07051 -31.25404 -30.36528 -29.06724 -27.86882 -26.71742 -24.71262 -24.68620 -23.40281 -23.19829 -22.39017 -21.68360 -20.84965 -20.46061 -18.96793 -18.65434 -17.90485 -17.38058 -17.16474 -17.13506 -16.52896 -16.06062 -16.00471 -15.97987 -15.70760 -15.62834 -15.39044 -14.91613 -14.74252 -14.56371 -14.37686 -14.15299 -13.63361 -13.48216 -13.30210 -13.25038 -12.88598 -12.73012 -12.60471 -12.55362 -12.47034 -12.41929 -12.31705 -12.21632 -11.99724 -11.85609 -11.76370 -11.57850 -11.39296 -11.15772 -10.76802 -10.71796 -10.54463 -10.10946 -9.99691 -9.06016 -8.26634 -6.30538 0.52251 0.85255 1.37138 1.38242 1.48723 1.49535 1.62135 2.35909 2.56645 2.80726 3.05268 3.13240 3.27382 3.46783 3.58735 3.68390 3.73984 3.84681 3.94337 4.00044 4.10862 4.12139 4.15235 4.21103 4.24042 4.25411 4.36224 4.41926 4.51405 4.57423 4.66816 4.69615 4.79601 4.80198 4.83826 4.86222 4.88941 4.93407 4.94888 4.99140 5.03935 5.09379 5.12342 5.44559 5.49633 5.55318 5.58435 5.67911 5.80350 5.95398 6.14040 6.30872 6.62973 6.76007 7.33075 7.58374 8.89932 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021899 B = 0.002323 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.282920 B =12051.950197 C =12711.299137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.194 4.194 3 C 0.133 3.867 4 N -0.451 5.451 5 C 0.199 3.801 6 C -0.028 4.028 7 H 0.132 0.868 8 C -0.138 4.138 9 C 0.046 3.954 10 O -0.389 6.389 11 C 0.061 3.939 12 N -0.316 5.316 13 N -0.345 5.345 14 C 0.351 3.649 15 N -0.453 5.453 16 C 0.083 3.917 17 C 0.077 3.923 18 N -0.549 5.549 19 C 0.175 3.825 20 C -0.516 4.516 21 H 0.036 0.964 22 C 0.006 3.994 23 N -0.949 5.949 24 Si 0.949 3.051 25 H -0.267 1.267 26 H -0.284 1.284 27 H -0.247 1.247 28 C 0.060 3.940 29 C 0.084 3.916 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.129 0.871 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.041 0.959 44 H 0.067 0.933 45 H -0.006 1.006 46 H 0.032 0.968 47 H 0.266 0.734 48 H 0.047 0.953 49 H 0.089 0.911 50 H 0.093 0.907 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.564 -21.635 -22.523 32.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.213 4.213 3 C 0.012 3.988 4 N -0.142 5.142 5 C -0.070 4.070 6 C -0.049 4.049 7 H 0.150 0.850 8 C -0.177 4.177 9 C -0.030 4.030 10 O -0.308 6.308 11 C -0.017 4.017 12 N -0.156 5.156 13 N -0.189 5.189 14 C -0.007 4.007 15 N -0.180 5.180 16 C -0.044 4.044 17 C -0.051 4.051 18 N -0.274 5.274 19 C 0.048 3.952 20 C -0.555 4.555 21 H 0.054 0.946 22 C -0.191 4.191 23 N -0.590 5.590 24 Si 0.773 3.227 25 H -0.192 1.192 26 H -0.210 1.210 27 H -0.170 1.170 28 C -0.068 4.068 29 C -0.044 4.044 30 H 0.121 0.879 31 H 0.134 0.866 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.147 0.853 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.055 0.945 42 H 0.106 0.894 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.012 0.988 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.108 0.892 50 H 0.112 0.888 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.572 -21.409 -21.462 31.789 hybrid contribution -1.734 0.528 -0.025 1.812 sum 7.838 -20.881 -21.487 30.970 Atomic orbital electron populations 1.24152 0.95565 1.03313 0.95103 1.22966 0.96513 0.97242 1.04537 1.21298 0.91929 0.98713 0.86859 1.46549 1.12294 1.44228 1.11149 1.24796 0.83094 1.01554 0.97518 1.21281 0.96093 0.95091 0.92459 0.85009 1.22987 0.97534 0.94799 1.02371 1.23314 0.94803 0.87450 0.97478 1.88883 1.65908 1.18312 1.57680 1.23561 0.87559 0.91975 0.98563 1.73917 1.23965 1.16306 1.01448 1.74636 0.99198 1.18334 1.26721 1.22390 0.92913 1.00910 0.84474 1.59031 1.18679 1.03061 1.37180 1.22117 0.97245 0.85513 0.99568 1.21896 0.94042 0.97474 0.91709 1.61978 1.29011 1.02054 1.34395 1.19900 0.87317 0.93708 0.94273 1.21254 0.94509 1.01918 1.37797 0.94587 1.25878 1.03996 0.94828 0.94416 1.70066 1.34287 1.13317 1.41309 0.85683 0.78674 0.78392 0.79973 1.19174 1.20986 1.17004 1.22180 0.95387 0.89291 0.99945 1.22112 0.95383 0.96578 0.90288 0.87921 0.86577 0.86249 0.87677 0.85350 0.91281 0.87465 0.92179 0.87271 0.87092 0.92479 0.94460 0.89367 0.94053 0.91423 0.98791 0.95023 0.92490 0.93479 0.89245 0.88835 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 14.32 67.78 0.97 -0.54 16 2 C -0.19 -2.12 9.85 25.65 0.25 -1.87 16 3 C 0.13 1.65 6.33 85.63 0.54 2.20 16 4 N -0.45 -9.18 2.79 -518.91 -1.45 -10.63 16 5 C 0.20 4.16 6.63 137.64 0.91 5.08 16 6 C -0.03 -0.37 3.52 -10.24 -0.04 -0.40 16 7 H 0.13 0.95 7.07 -2.39 -0.02 0.94 16 8 C -0.14 -1.58 6.59 31.59 0.21 -1.37 16 9 C 0.05 0.54 7.70 72.35 0.56 1.09 16 10 O -0.39 -6.42 11.52 -148.98 -1.72 -8.14 16 11 C 0.06 0.93 7.16 72.66 0.52 1.45 16 12 N -0.32 -9.34 11.87 -49.54 -0.59 -9.93 16 13 N -0.35 -11.55 12.19 -58.00 -0.71 -12.25 16 14 C 0.35 9.75 6.45 260.11 1.68 11.43 16 15 N -0.45 -12.68 4.73 -705.53 -3.33 -16.02 16 16 C 0.08 2.67 5.53 86.31 0.48 3.15 16 17 C 0.08 2.88 5.43 86.31 0.47 3.35 16 18 N -0.55 -22.14 4.70 -900.30 -4.23 -26.38 16 19 C 0.17 8.09 3.79 85.56 0.32 8.42 16 20 C -0.52 -29.46 9.03 25.60 0.23 -29.23 16 21 H 0.04 2.31 7.37 -2.91 -0.02 2.29 16 22 C 0.01 0.34 5.47 84.65 0.46 0.81 16 23 N -0.95 -59.16 13.96 21.45 0.30 -58.86 16 24 Si 0.95 43.09 27.47 68.60 1.88 44.97 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 27 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 28 C 0.06 1.86 5.61 86.31 0.48 2.35 16 29 C 0.08 2.39 5.53 86.31 0.48 2.87 16 30 H 0.10 1.15 7.84 -2.91 -0.02 1.12 16 31 H 0.12 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.12 1.15 8.06 -2.91 -0.02 1.13 16 33 H 0.10 1.44 7.79 -2.39 -0.02 1.42 16 34 H 0.13 0.83 7.30 -2.39 -0.02 0.81 16 35 H 0.07 1.10 7.79 -2.39 -0.02 1.08 16 36 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.06 1.12 7.85 -2.39 -0.02 1.10 16 41 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 2.53 8.13 -2.39 -0.02 2.51 16 43 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 2.93 6.79 -2.39 -0.02 2.92 16 45 H -0.01 -0.25 7.18 -2.39 -0.02 -0.27 16 46 H 0.03 1.43 7.45 -2.39 -0.02 1.41 16 47 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.09 2.60 8.07 -2.39 -0.02 2.58 16 50 H 0.09 2.27 8.13 -2.39 -0.02 2.25 16 51 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -74.71 407.23 -0.46 -75.17 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.85 Total: 13.28 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 8.53 Total: 8.78 kcal Atomic # 7 Polarization: -124.06 SS G_CDS: -10.01 Total: -134.07 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -1.72 Total: -8.14 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 1.88 Total: 44.97 kcal Total: -74.71 -0.46 -75.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871054298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.282 kcal (2) G-P(sol) polarization free energy of solvation -74.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds