Wall clock time and date at job start Wed Apr 1 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47314 * 2 1 4 4 C 1.50701 * 109.47286 * 119.99578 * 2 1 3 5 5 C 1.35369 * 126.38767 * 144.99732 * 4 2 1 6 6 C 1.41498 * 105.50281 * 180.02562 * 5 4 2 7 7 C 1.47715 * 126.51658 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00303 * 352.99479 * 7 6 5 9 9 N 1.34778 * 119.99891 * 172.98833 * 7 6 5 10 10 C 1.47076 * 120.88154 * 173.30095 * 9 7 6 11 11 C 1.53246 * 108.52187 * 128.83896 * 10 9 7 12 12 N 1.46900 * 109.33476 * 53.83215 * 11 10 9 13 13 C 1.46899 * 110.99531 * 172.74797 * 12 11 10 14 14 C 1.53946 * 113.74487 * 273.73920 * 13 12 11 15 15 N 1.47811 * 86.04062 * 222.08755 * 14 13 12 16 16 C 1.36935 * 134.45936 * 204.64780 * 15 14 13 17 17 H 1.08000 * 120.00433 * 179.86590 * 16 15 14 18 18 C 1.38811 * 119.99845 * 359.86026 * 16 15 14 19 19 N 1.31621 * 120.00110 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47422 * 119.99937 * 20 18 16 23 23 H 1.48503 * 109.46944 * 240.00078 * 20 18 16 24 24 C 1.47582 * 91.05160 * 24.54669 * 15 14 13 25 25 C 1.46898 * 111.27052 * 296.89672 * 12 11 10 26 26 C 1.47082 * 120.88109 * 353.32907 * 9 7 6 27 27 N 1.31813 * 106.96513 * 0.24519 * 6 5 4 28 28 N 1.28465 * 110.07063 * 359.59152 * 27 6 5 29 29 H 0.97001 * 124.88572 * 180.20849 * 28 27 6 30 30 H 1.08993 * 109.46845 * 300.00230 * 1 2 3 31 31 H 1.09003 * 109.46903 * 60.00650 * 1 2 3 32 32 H 1.08997 * 109.46770 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47415 * 239.99706 * 2 1 3 34 34 H 1.08997 * 109.46891 * 59.99948 * 3 2 1 35 35 H 1.09005 * 109.47102 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.46975 * 299.99682 * 3 2 1 37 37 H 1.07998 * 127.24399 * 0.02562 * 5 4 2 38 38 H 1.08996 * 109.62956 * 9.13282 * 10 9 7 39 39 H 1.09001 * 109.63367 * 248.54713 * 10 9 7 40 40 H 1.08993 * 109.49571 * 173.79271 * 11 10 9 41 41 H 1.09002 * 109.49204 * 293.87871 * 11 10 9 42 42 H 1.08999 * 112.94998 * 45.33813 * 13 12 11 43 43 H 1.09007 * 113.76652 * 336.35243 * 14 13 12 44 44 H 1.09000 * 113.76785 * 107.74379 * 14 13 12 45 45 H 0.96998 * 120.00455 * 180.02562 * 19 18 16 46 46 H 1.08992 * 113.77387 * 221.15355 * 24 15 14 47 47 H 1.09005 * 113.87066 * 89.76931 * 24 15 14 48 48 H 1.09001 * 109.49238 * 183.07067 * 25 12 11 49 49 H 1.09002 * 109.49074 * 303.14307 * 25 12 11 50 50 H 1.09004 * 109.62934 * 111.45211 * 26 9 7 51 51 H 1.09001 * 109.63135 * 350.87479 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 3.1416 -1.4814 1.3160 6 6 3.1925 -1.9233 2.6593 7 6 4.2215 -2.7972 3.2588 8 8 5.0678 -3.3118 2.5539 9 7 4.2223 -3.0239 4.5873 10 6 5.1431 -4.0022 5.1857 11 6 5.8818 -3.3285 6.3471 12 7 4.9021 -2.7489 7.2757 13 6 5.5606 -2.2443 8.4880 14 6 5.7565 -3.3138 9.5778 15 7 5.3365 -2.2685 10.5349 16 6 5.5481 -2.0496 11.8699 17 1 5.1192 -1.1822 12.3496 18 6 6.3139 -2.9426 12.6068 19 7 6.8369 -3.9995 12.0222 20 14 6.6020 -2.6444 14.4282 21 1 5.9107 -1.3966 14.8410 22 1 6.0650 -3.7883 15.2082 23 1 8.0588 -2.5115 14.6836 24 6 4.6000 -1.5546 9.4738 25 6 4.1128 -1.6933 6.6271 26 6 3.3018 -2.2999 5.4772 27 7 2.1438 -1.4117 3.2724 28 7 1.4595 -0.6968 2.4532 29 1 0.6464 -0.2187 2.6796 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.8406 -1.7110 0.5254 38 1 5.8628 -4.3332 4.4370 39 1 4.5782 -4.8570 5.5578 40 1 6.4866 -4.0682 6.8715 41 1 6.5264 -2.5396 5.9594 42 1 6.4594 -1.6659 8.2741 43 1 5.0591 -4.1484 9.5047 44 1 6.7918 -3.6323 9.6997 45 1 7.3717 -4.6237 12.5372 46 1 4.7136 -0.4713 9.5127 47 1 3.5618 -1.8699 9.3688 48 1 3.4348 -1.2471 7.3547 49 1 4.7821 -0.9272 6.2356 50 1 2.5598 -2.9911 5.8773 51 1 2.8039 -1.5055 4.9212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941578995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:37 Heat of formation + Delta-G solvation = 115.190253 kcal Electronic energy + Delta-G solvation = -30654.412706 eV Core-core repulsion = 26592.853702 eV Total energy + Delta-G solvation = -4061.559005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.09350 -39.95921 -38.49158 -36.65094 -36.23918 -33.82928 -32.31390 -31.79347 -31.09783 -30.03614 -28.10180 -27.76958 -26.38811 -25.05084 -24.22172 -23.37971 -22.75167 -22.34268 -21.32794 -20.67971 -19.03557 -18.62432 -18.12422 -16.92672 -16.60833 -16.20850 -15.98844 -15.45003 -15.09174 -14.97314 -14.86131 -14.66813 -14.48490 -14.17386 -13.98624 -13.75583 -13.71641 -13.54707 -12.88113 -12.81255 -12.62259 -12.36256 -12.03758 -11.92737 -11.83714 -11.68066 -11.51524 -11.44266 -11.31312 -11.06823 -10.92236 -10.75185 -10.68735 -10.47378 -10.09724 -9.87519 -9.72263 -9.64550 -9.34523 -9.27551 -8.78123 -8.64572 -7.90976 -6.82629 -5.72775 -3.04782 1.32174 1.79872 2.45615 2.97513 3.28138 3.41200 3.46015 3.48961 3.95767 4.10810 4.21361 4.27757 4.48076 4.53117 4.76453 4.80202 4.97903 5.06160 5.09688 5.12569 5.19472 5.22640 5.30550 5.37356 5.40291 5.43257 5.46688 5.50952 5.56398 5.63103 5.65921 5.70094 5.75029 5.87960 5.95159 5.99668 6.03734 6.11812 6.20110 6.37815 6.49083 6.66120 6.70347 6.74257 7.13285 7.31269 7.35986 7.39776 7.57998 7.60149 7.75540 8.02667 8.11794 9.08876 9.74645 10.65063 11.44570 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.001952 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.187054 B =14337.203118 C =15127.852952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.027 4.027 3 C -0.147 4.147 4 C 0.025 3.975 5 C -0.176 4.176 6 C -0.002 4.002 7 C 0.600 3.400 8 O -0.539 6.539 9 N -0.597 5.597 10 C 0.117 3.883 11 C 0.044 3.956 12 N -0.525 5.525 13 C 0.026 3.974 14 C 0.181 3.819 15 N -0.612 5.612 16 C -0.220 4.220 17 H 0.080 0.920 18 C -0.009 4.009 19 N -0.920 5.920 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.127 3.873 25 C 0.041 3.959 26 C 0.097 3.903 27 N -0.255 5.255 28 N -0.381 5.381 29 H 0.442 0.558 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.033 0.967 42 H 0.061 0.939 43 H 0.036 0.964 44 H 0.069 0.931 45 H 0.253 0.747 46 H 0.038 0.962 47 H 0.041 0.959 48 H 0.088 0.912 49 H 0.030 0.970 50 H 0.074 0.926 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.979 8.645 -27.021 31.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.047 4.047 3 C -0.205 4.205 4 C -0.101 4.101 5 C -0.204 4.204 6 C -0.163 4.163 7 C 0.387 3.613 8 O -0.415 6.415 9 N -0.329 5.329 10 C -0.005 4.005 11 C -0.085 4.085 12 N -0.251 5.251 13 C -0.083 4.083 14 C 0.055 3.945 15 N -0.339 5.339 16 C -0.348 4.348 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.001 3.999 25 C -0.088 4.088 26 C -0.027 4.027 27 N -0.090 5.090 28 N -0.094 5.094 29 H 0.287 0.713 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.179 0.821 38 H 0.112 0.888 39 H 0.096 0.904 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.058 0.942 48 H 0.107 0.893 49 H 0.048 0.952 50 H 0.093 0.907 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.192 7.931 -25.885 30.116 hybrid contribution 0.549 0.936 0.354 1.141 sum -12.643 8.867 -25.531 29.837 Atomic orbital electron populations 1.21908 0.94134 1.02576 1.02570 1.19790 0.95901 0.95882 0.93129 1.21881 1.02024 0.94308 1.02274 1.21374 0.96538 1.03306 0.88926 1.21487 0.99578 1.02382 0.96923 1.21939 0.96447 1.04130 0.93761 1.16982 0.82788 0.79889 0.81667 1.90774 1.37996 1.51615 1.61104 1.48024 1.38217 1.40931 1.05771 1.21816 0.92852 0.90924 0.94902 1.22418 0.93808 0.99244 0.93014 1.62251 1.24897 1.32099 1.05847 1.24315 0.96328 0.99904 0.87713 1.22257 0.99821 0.90280 0.82146 1.45818 1.57522 1.25563 1.05002 1.19033 1.26557 1.06624 0.82537 0.90260 1.24788 1.00523 0.97039 0.98214 1.69833 1.38217 1.13903 1.34781 0.86049 0.77567 0.77308 0.84850 1.20507 1.21748 1.21742 1.22599 0.94760 0.95381 0.87173 1.22468 0.97254 0.93076 0.95983 1.22523 0.91625 0.97695 0.90823 1.73516 1.06374 1.09373 1.19767 1.43447 1.22618 1.36952 1.06430 0.71289 0.92805 0.91184 0.91929 0.88304 0.92620 0.91786 0.91580 0.82090 0.88808 0.90353 0.89016 0.94830 0.92143 0.94570 0.91297 0.93706 0.94433 0.94166 0.89337 0.95170 0.90732 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 8.95 37.16 0.33 -0.11 16 2 C -0.03 -0.11 3.32 -91.77 -0.30 -0.42 16 3 C -0.15 -0.56 9.18 37.16 0.34 -0.22 16 4 C 0.02 0.18 5.92 -82.21 -0.49 -0.31 16 5 C -0.18 -1.76 10.74 -39.36 -0.42 -2.18 16 6 C 0.00 -0.03 6.82 -82.76 -0.56 -0.59 16 7 C 0.60 8.75 7.70 -12.39 -0.10 8.66 16 8 O -0.54 -9.17 16.39 5.30 0.09 -9.08 16 9 N -0.60 -8.25 3.01 -173.62 -0.52 -8.77 16 10 C 0.12 1.60 6.61 -3.60 -0.02 1.58 16 11 C 0.04 0.66 5.60 -3.70 -0.02 0.64 16 12 N -0.53 -8.58 4.61 -228.22 -1.05 -9.63 16 13 C 0.03 0.50 3.42 -69.90 -0.24 0.26 16 14 C 0.18 4.36 7.32 -2.84 -0.02 4.34 16 15 N -0.61 -16.12 3.70 -177.84 -0.66 -16.78 16 16 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 17 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 19 N -0.92 -27.73 11.39 55.49 0.63 -27.10 16 20 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 C 0.13 2.66 7.35 -2.96 -0.02 2.64 16 25 C 0.04 0.58 5.43 -3.70 -0.02 0.56 16 26 C 0.10 1.22 6.22 -3.60 -0.02 1.20 16 27 N -0.25 -2.63 8.76 33.42 0.29 -2.34 16 28 N -0.38 -2.72 6.64 33.50 0.22 -2.49 16 29 H 0.44 1.74 8.14 -190.44 -1.55 0.19 16 30 H 0.05 0.11 7.43 -51.93 -0.39 -0.27 16 31 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.16 1.49 8.06 -52.49 -0.42 1.07 16 38 H 0.09 1.28 7.04 -51.93 -0.37 0.91 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.09 1.37 8.11 -51.93 -0.42 0.95 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 43 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.07 1.83 7.16 -51.93 -0.37 1.46 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.04 0.82 7.65 -51.93 -0.40 0.43 16 48 H 0.09 1.21 6.56 -51.93 -0.34 0.87 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.12 1.40 4.34 -57.15 -0.25 1.15 16 LS Contribution 402.61 15.07 6.07 6.07 Total: -1.00 -34.68 402.61 -11.33 -46.00 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -9.54 Total: -2.53 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -1.83 Total: 9.23 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -1.09 Total: -67.11 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.68 -11.33 -46.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941578995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.192 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds