Wall clock time and date at job start Wed Apr 1 2020 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47314 * 2 1 4 4 C 1.50701 * 109.47286 * 119.99578 * 2 1 3 5 5 C 1.35369 * 126.38767 * 144.99732 * 4 2 1 6 6 C 1.41498 * 105.50281 * 180.02562 * 5 4 2 7 7 C 1.47715 * 126.51658 * 179.97438 * 6 5 4 8 8 O 1.21570 * 120.00303 * 352.99479 * 7 6 5 9 9 N 1.34778 * 119.99891 * 172.98833 * 7 6 5 10 10 C 1.47076 * 120.88154 * 173.30095 * 9 7 6 11 11 C 1.53246 * 108.52187 * 128.83896 * 10 9 7 12 12 N 1.46900 * 109.33476 * 53.83215 * 11 10 9 13 13 C 1.46899 * 110.99531 * 172.74797 * 12 11 10 14 14 C 1.53946 * 113.74487 * 273.73920 * 13 12 11 15 15 N 1.47811 * 86.04062 * 222.08755 * 14 13 12 16 16 C 1.36935 * 134.45936 * 204.64780 * 15 14 13 17 17 H 1.08000 * 120.00433 * 179.86590 * 16 15 14 18 18 C 1.38811 * 119.99845 * 359.86026 * 16 15 14 19 19 N 1.31621 * 120.00110 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47241 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47422 * 119.99937 * 20 18 16 23 23 H 1.48503 * 109.46944 * 240.00078 * 20 18 16 24 24 C 1.47582 * 91.05160 * 24.54669 * 15 14 13 25 25 C 1.46898 * 111.27052 * 296.89672 * 12 11 10 26 26 C 1.47082 * 120.88109 * 353.32907 * 9 7 6 27 27 N 1.31813 * 106.96513 * 0.24519 * 6 5 4 28 28 N 1.28465 * 110.07063 * 359.59152 * 27 6 5 29 29 H 0.97001 * 124.88572 * 180.20849 * 28 27 6 30 30 H 1.08993 * 109.46845 * 300.00230 * 1 2 3 31 31 H 1.09003 * 109.46903 * 60.00650 * 1 2 3 32 32 H 1.08997 * 109.46770 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47415 * 239.99706 * 2 1 3 34 34 H 1.08997 * 109.46891 * 59.99948 * 3 2 1 35 35 H 1.09005 * 109.47102 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.46975 * 299.99682 * 3 2 1 37 37 H 1.07998 * 127.24399 * 0.02562 * 5 4 2 38 38 H 1.08996 * 109.62956 * 9.13282 * 10 9 7 39 39 H 1.09001 * 109.63367 * 248.54713 * 10 9 7 40 40 H 1.08993 * 109.49571 * 173.79271 * 11 10 9 41 41 H 1.09002 * 109.49204 * 293.87871 * 11 10 9 42 42 H 1.08999 * 112.94998 * 45.33813 * 13 12 11 43 43 H 1.09007 * 113.76652 * 336.35243 * 14 13 12 44 44 H 1.09000 * 113.76785 * 107.74379 * 14 13 12 45 45 H 0.96998 * 120.00455 * 180.02562 * 19 18 16 46 46 H 1.08992 * 113.77387 * 221.15355 * 24 15 14 47 47 H 1.09005 * 113.87066 * 89.76931 * 24 15 14 48 48 H 1.09001 * 109.49238 * 183.07067 * 25 12 11 49 49 H 1.09002 * 109.49074 * 303.14307 * 25 12 11 50 50 H 1.09004 * 109.62934 * 111.45211 * 26 9 7 51 51 H 1.09001 * 109.63135 * 350.87479 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 3.1416 -1.4814 1.3160 6 6 3.1925 -1.9233 2.6593 7 6 4.2215 -2.7972 3.2588 8 8 5.0678 -3.3118 2.5539 9 7 4.2223 -3.0239 4.5873 10 6 5.1431 -4.0022 5.1857 11 6 5.8818 -3.3285 6.3471 12 7 4.9021 -2.7489 7.2757 13 6 5.5606 -2.2443 8.4880 14 6 5.7565 -3.3138 9.5778 15 7 5.3365 -2.2685 10.5349 16 6 5.5481 -2.0496 11.8699 17 1 5.1192 -1.1822 12.3496 18 6 6.3139 -2.9426 12.6068 19 7 6.8369 -3.9995 12.0222 20 14 6.6020 -2.6444 14.4282 21 1 5.9107 -1.3966 14.8410 22 1 6.0650 -3.7883 15.2082 23 1 8.0588 -2.5115 14.6836 24 6 4.6000 -1.5546 9.4738 25 6 4.1128 -1.6933 6.6271 26 6 3.3018 -2.2999 5.4772 27 7 2.1438 -1.4117 3.2724 28 7 1.4595 -0.6968 2.4532 29 1 0.6464 -0.2187 2.6796 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6768 1.9563 -0.8900 37 1 3.8406 -1.7110 0.5254 38 1 5.8628 -4.3332 4.4370 39 1 4.5782 -4.8570 5.5578 40 1 6.4866 -4.0682 6.8715 41 1 6.5264 -2.5396 5.9594 42 1 6.4594 -1.6659 8.2741 43 1 5.0591 -4.1484 9.5047 44 1 6.7918 -3.6323 9.6997 45 1 7.3717 -4.6237 12.5372 46 1 4.7136 -0.4713 9.5127 47 1 3.5618 -1.8699 9.3688 48 1 3.4348 -1.2471 7.3547 49 1 4.7821 -0.9272 6.2356 50 1 2.5598 -2.9911 5.8773 51 1 2.8039 -1.5055 4.9212 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941578995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:36 Heat of formation + Delta-G solvation = 91.587030 kcal Electronic energy + Delta-G solvation = -30655.436219 eV Core-core repulsion = 26592.853702 eV Total energy + Delta-G solvation = -4062.582517 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.81670 -41.15404 -40.00446 -38.08409 -36.64899 -35.24675 -33.89142 -33.04428 -32.14811 -30.75569 -29.79322 -28.08540 -27.85757 -26.75439 -25.35683 -24.41518 -24.17092 -23.42209 -22.09425 -21.67820 -20.71018 -19.71631 -18.88732 -18.75280 -17.68647 -17.13748 -17.03308 -16.89288 -16.58151 -16.13230 -15.95346 -15.77695 -15.64567 -15.26334 -15.05615 -14.83312 -14.49010 -14.39833 -14.17605 -13.90480 -13.81974 -13.37091 -13.28768 -13.07476 -13.03460 -12.87996 -12.67381 -12.56575 -12.35249 -12.20587 -12.16182 -12.12108 -11.98347 -11.75886 -11.75173 -11.46806 -11.20137 -11.02414 -10.87629 -10.46316 -9.95845 -9.82999 -9.25680 -8.91706 -7.89951 -5.23901 0.44337 1.09631 1.45668 1.47274 1.57484 1.71539 2.07052 2.26516 2.46138 2.88911 3.23668 3.30342 3.48271 3.55760 3.68052 3.78954 3.92495 4.00726 4.16534 4.20784 4.23432 4.27219 4.39502 4.41557 4.44090 4.56636 4.60265 4.66756 4.71105 4.77832 4.79137 4.86410 4.89934 4.90706 4.97668 4.98082 5.03274 5.11327 5.17587 5.26565 5.28849 5.36772 5.38213 5.39386 5.48427 5.53272 5.91700 6.06754 6.13154 6.13967 6.33534 6.79410 6.92132 7.05920 7.60687 8.57061 9.27474 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024275 B = 0.001952 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.187054 B =14337.203118 C =15127.852952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.024 4.024 3 C -0.146 4.146 4 C 0.047 3.953 5 C -0.197 4.197 6 C -0.030 4.030 7 C 0.597 3.403 8 O -0.573 6.573 9 N -0.600 5.600 10 C 0.123 3.877 11 C 0.048 3.952 12 N -0.529 5.529 13 C 0.058 3.942 14 C 0.181 3.819 15 N -0.643 5.643 16 C -0.232 4.232 17 H 0.086 0.914 18 C -0.070 4.070 19 N -0.954 5.954 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.292 1.292 24 C 0.134 3.866 25 C 0.044 3.956 26 C 0.105 3.895 27 N -0.261 5.261 28 N -0.363 5.363 29 H 0.459 0.541 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.161 0.839 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.031 0.969 42 H 0.057 0.943 43 H 0.021 0.979 44 H 0.036 0.964 45 H 0.248 0.752 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.098 0.902 49 H 0.030 0.970 50 H 0.077 0.923 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.235 10.786 -28.119 33.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.044 4.044 3 C -0.204 4.204 4 C -0.080 4.080 5 C -0.225 4.225 6 C -0.189 4.189 7 C 0.385 3.615 8 O -0.451 6.451 9 N -0.331 5.331 10 C 0.000 4.000 11 C -0.080 4.080 12 N -0.255 5.255 13 C -0.051 4.051 14 C 0.055 3.945 15 N -0.371 5.371 16 C -0.361 4.361 17 H 0.104 0.896 18 C -0.263 4.263 19 N -0.603 5.603 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.220 1.220 23 H -0.219 1.219 24 C 0.009 3.991 25 C -0.085 4.085 26 C -0.018 4.018 27 N -0.098 5.098 28 N -0.079 5.079 29 H 0.307 0.693 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.179 0.821 38 H 0.111 0.889 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.039 0.961 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.116 0.884 49 H 0.048 0.952 50 H 0.095 0.905 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.498 10.113 -26.995 32.729 hybrid contribution 1.162 0.321 0.580 1.338 sum -14.336 10.434 -26.415 31.814 Atomic orbital electron populations 1.21921 0.92715 1.02640 1.03828 1.19916 0.96981 0.95819 0.91688 1.21877 1.01315 0.93974 1.03186 1.21722 0.95080 1.01636 0.89588 1.21642 1.00978 1.03607 0.96311 1.21702 0.96986 1.05427 0.94798 1.17331 0.82878 0.79716 0.81565 1.90742 1.39495 1.53071 1.61798 1.48112 1.38221 1.40865 1.05933 1.21723 0.92957 0.91022 0.94258 1.22392 0.93639 0.99019 0.92994 1.62152 1.24924 1.32886 1.05516 1.23730 0.96027 0.97122 0.88217 1.22082 0.97391 0.90810 0.84212 1.46210 1.58754 1.26853 1.05253 1.19453 1.25997 1.06665 0.83953 0.89631 1.25679 1.00817 0.97097 1.02706 1.70030 1.39194 1.14887 1.36217 0.84969 0.77149 0.77551 0.79404 1.18746 1.21979 1.21885 1.22716 0.95075 0.96031 0.85319 1.22537 0.97068 0.92397 0.96482 1.22544 0.91084 0.98029 0.90128 1.73349 1.06167 1.09842 1.20429 1.43501 1.22563 1.35694 1.06116 0.69319 0.91721 0.89891 0.92445 0.87644 0.92442 0.92938 0.89989 0.82145 0.88911 0.89831 0.89548 0.95072 0.92510 0.96079 0.94576 0.94275 0.92718 0.92797 0.88359 0.95183 0.90452 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.39 8.95 71.98 0.64 0.25 16 2 C -0.02 -0.14 3.32 -11.54 -0.04 -0.18 16 3 C -0.15 -0.73 9.18 71.98 0.66 -0.07 16 4 C 0.05 0.57 5.92 41.40 0.25 0.82 16 5 C -0.20 -3.79 10.74 22.41 0.24 -3.55 16 6 C -0.03 -0.72 6.82 42.46 0.29 -0.43 16 7 C 0.60 17.40 7.70 86.75 0.67 18.06 16 8 O -0.57 -19.90 16.39 -3.94 -0.06 -19.96 16 9 N -0.60 -16.25 3.01 -821.49 -2.47 -18.73 16 10 C 0.12 3.36 6.61 86.35 0.57 3.93 16 11 C 0.05 1.44 5.60 86.39 0.48 1.92 16 12 N -0.53 -16.90 4.61 -875.96 -4.04 -20.94 16 13 C 0.06 2.25 3.42 46.67 0.16 2.41 16 14 C 0.18 8.97 7.32 86.44 0.63 9.61 16 15 N -0.64 -34.05 3.70 -716.56 -2.65 -36.70 16 16 C -0.23 -13.32 10.70 84.03 0.90 -12.42 16 17 H 0.09 4.66 7.83 -2.91 -0.02 4.63 16 18 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 19 N -0.95 -59.08 11.39 21.65 0.25 -58.83 16 20 Si 0.98 46.53 29.55 68.60 2.03 48.55 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 C 0.13 5.42 7.35 86.49 0.64 6.06 16 25 C 0.04 1.15 5.43 86.38 0.47 1.62 16 26 C 0.10 2.49 6.22 86.35 0.54 3.03 16 27 N -0.26 -4.93 8.76 -48.17 -0.42 -5.35 16 28 N -0.36 -4.29 6.64 -47.93 -0.32 -4.60 16 29 H 0.46 2.15 8.14 -219.99 -1.79 0.36 16 30 H 0.06 0.03 7.43 -2.39 -0.02 0.02 16 31 H 0.08 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 36 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 38 H 0.09 2.58 7.04 -2.39 -0.02 2.56 16 39 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 41 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 2.27 8.11 -2.39 -0.02 2.25 16 43 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 44 H 0.04 2.01 7.16 -2.39 -0.02 1.99 16 45 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 2.08 7.65 -2.38 -0.02 2.07 16 48 H 0.10 2.42 6.56 -2.39 -0.02 2.41 16 49 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.13 2.86 4.34 -9.14 -0.04 2.82 16 Total: -1.00 -76.13 402.61 -1.01 -77.14 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.88 Total: 12.01 kcal Atomic # 6 Polarization: 19.85 SS G_CDS: 7.56 Total: 27.42 kcal Atomic # 7 Polarization: -135.50 SS G_CDS: -9.66 Total: -145.16 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.96 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -76.13 -1.01 -77.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941578995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.726 kcal (2) G-P(sol) polarization free energy of solvation -76.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds