Wall clock time and date at job start Wed Apr 1 2020 05:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47271 * 2 1 4 4 N 1.46502 * 109.47174 * 120.00024 * 2 1 3 5 5 C 1.34809 * 126.59200 * 274.99573 * 4 2 1 6 6 C 1.36600 * 106.84165 * 180.02562 * 5 4 2 7 7 C 1.47520 * 125.77353 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99993 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99544 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99623 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.02130 * 36.06589 * 10 9 7 12 12 C 1.52530 * 108.97665 * 277.16101 * 10 9 7 13 13 C 1.53841 * 111.65819 * 185.42299 * 12 10 9 14 14 C 1.51447 * 107.04724 * 57.20039 * 13 12 10 15 15 H 1.08997 * 110.22455 * 54.38463 * 14 13 12 16 16 C 1.52330 * 117.44800 * 181.24570 * 14 13 12 17 17 N 1.48237 * 105.86949 * 145.29637 * 16 14 13 18 18 C 1.36939 * 125.78341 * 176.79367 * 17 16 14 19 19 H 1.08003 * 119.99550 * 193.37526 * 18 17 16 20 20 C 1.38807 * 120.00028 * 13.37910 * 18 17 16 21 21 N 1.31623 * 119.99966 * 192.67245 * 20 18 17 22 22 Si 1.86799 * 120.00175 * 12.67113 * 20 18 17 23 23 H 1.48505 * 109.47088 * 54.52385 * 22 20 18 24 24 H 1.48500 * 109.47129 * 294.52591 * 22 20 18 25 25 H 1.48497 * 109.47060 * 174.52424 * 22 20 18 26 26 C 1.48656 * 108.43053 * 357.06192 * 17 16 14 27 27 C 1.53300 * 103.32704 * 335.27985 * 26 17 16 28 28 H 1.08999 * 110.75309 * 284.62123 * 27 26 17 29 29 C 1.51620 * 116.58219 * 156.07688 * 27 26 17 30 30 N 1.34408 * 108.45597 * 0.24766 * 6 5 4 31 31 N 1.28767 * 109.51820 * 359.58229 * 30 6 5 32 32 H 1.09004 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47204 * 300.00178 * 1 2 3 34 34 H 1.08998 * 109.47115 * 59.99999 * 1 2 3 35 35 H 1.08997 * 109.47204 * 239.99822 * 2 1 3 36 36 H 1.08997 * 109.47433 * 180.02562 * 3 2 1 37 37 H 1.09007 * 109.46822 * 299.99994 * 3 2 1 38 38 H 1.08997 * 109.47151 * 59.99790 * 3 2 1 39 39 H 1.08002 * 126.58598 * 0.02562 * 5 4 2 40 40 H 0.96995 * 120.00324 * 0.02562 * 9 7 6 41 41 H 1.09000 * 109.04098 * 305.97885 * 12 10 9 42 42 H 1.08990 * 109.04363 * 64.86065 * 12 10 9 43 43 H 1.08999 * 109.94234 * 297.81474 * 13 12 10 44 44 H 1.08999 * 109.93728 * 176.58131 * 13 12 10 45 45 H 1.08998 * 110.16947 * 26.19457 * 16 14 13 46 46 H 1.08999 * 110.16892 * 264.40129 * 16 14 13 47 47 H 0.96997 * 119.99803 * 5.23365 * 21 20 18 48 48 H 1.09001 * 110.62888 * 93.85909 * 26 17 16 49 49 H 1.08998 * 110.62938 * 216.88158 * 26 17 16 50 50 H 1.09002 * 109.94255 * 303.30395 * 29 27 26 51 51 H 1.09005 * 109.94014 * 64.54609 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1973 -0.1514 2.4187 6 6 2.6643 -1.1488 3.2267 7 6 3.0018 -1.0136 4.6564 8 8 2.8704 0.0593 5.2133 9 7 3.4559 -2.0794 5.3452 10 6 3.7917 -1.9450 6.7650 11 1 3.0896 -1.2544 7.2322 12 6 5.2029 -1.3798 6.8896 13 6 5.6705 -1.3381 8.3546 14 6 5.5785 -2.7517 8.8904 15 1 6.1365 -3.4345 8.2497 16 6 5.9631 -2.9769 10.3470 17 7 5.0629 -4.0448 10.8435 18 6 5.1005 -4.6080 12.0912 19 1 4.5545 -5.5184 12.2893 20 6 5.8404 -4.0086 13.1011 21 7 6.0843 -4.6642 14.2161 22 14 6.4901 -2.2715 12.8780 23 1 5.3666 -1.3630 12.5350 24 1 7.4923 -2.2548 11.7823 25 1 7.1279 -1.8157 14.1392 26 6 4.1166 -4.4054 9.7552 27 6 4.0713 -3.1391 8.8923 28 1 3.4752 -2.3643 9.3744 29 6 3.6680 -3.3205 7.4420 30 7 2.7700 -2.2729 2.4974 31 7 2.3900 -2.0393 1.2895 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8901 38 1 1.6766 1.9563 0.8899 39 1 2.0079 0.8728 2.7045 40 1 3.5611 -2.9351 4.9009 41 1 5.8878 -2.0037 6.3153 42 1 5.2184 -0.3689 6.4824 43 1 5.0234 -0.6786 8.9328 44 1 6.7013 -0.9876 8.4059 45 1 5.8136 -2.0623 10.9209 46 1 7.0022 -3.2989 10.4159 47 1 5.8132 -5.5915 14.3026 48 1 4.4957 -5.2508 9.1811 49 1 3.1301 -4.6277 10.1621 50 1 4.3338 -4.0346 6.9575 51 1 2.6379 -3.6723 7.3839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980224559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:10 Heat of formation + Delta-G solvation = 83.275004 kcal Electronic energy + Delta-G solvation = -30525.587255 eV Core-core repulsion = 26462.644301 eV Total energy + Delta-G solvation = -4062.942954 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.63234 -40.20242 -38.92743 -37.04161 -35.90394 -33.67476 -32.07508 -31.94870 -31.41817 -30.79714 -28.90835 -28.16381 -26.92513 -25.08952 -24.37269 -23.65168 -21.76035 -21.32968 -21.24318 -20.57466 -20.18538 -19.67762 -18.42084 -17.33913 -16.64379 -16.46711 -16.20527 -15.43080 -15.24673 -15.09845 -14.84928 -14.73028 -14.42830 -14.27674 -13.86274 -13.77883 -13.37256 -13.25855 -13.13723 -13.09151 -12.64664 -12.47183 -12.32954 -12.26109 -12.10570 -11.99298 -11.91087 -11.59172 -11.36583 -11.20351 -10.85828 -10.80737 -10.71913 -10.57969 -10.46317 -10.21493 -9.89014 -9.69444 -9.63410 -9.22966 -9.07049 -8.90900 -8.62531 -6.94698 -6.23777 -3.15390 0.75214 1.40156 1.53659 2.94393 3.08467 3.48517 3.55972 3.65822 3.77505 3.83572 3.98960 4.18906 4.31312 4.51690 4.67149 4.67872 4.69182 4.70297 4.76143 4.83252 4.87140 4.96040 5.01013 5.04988 5.23317 5.27296 5.32831 5.40736 5.45315 5.51191 5.53490 5.60154 5.63451 5.86655 5.94339 5.95438 6.03229 6.09437 6.15188 6.19322 6.25881 6.30232 6.43416 6.48999 6.57412 6.69227 6.89686 6.90241 7.28965 7.61654 7.71749 8.01759 8.39837 9.10585 9.62429 10.31534 11.27059 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.032997 B = 0.001912 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.369681 B =14639.335309 C =15076.843512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.170 4.170 4 N -0.356 5.356 5 C 0.094 3.906 6 C -0.101 4.101 7 C 0.604 3.396 8 O -0.539 6.539 9 N -0.709 5.709 10 C 0.148 3.852 11 H 0.088 0.912 12 C -0.124 4.124 13 C -0.102 4.102 14 C -0.105 4.105 15 H 0.074 0.926 16 C 0.117 3.883 17 N -0.617 5.617 18 C -0.317 4.317 19 H 0.076 0.924 20 C -0.023 4.023 21 N -0.932 5.932 22 Si 1.072 2.928 23 H -0.297 1.297 24 H -0.286 1.286 25 H -0.303 1.303 26 C 0.144 3.856 27 C -0.106 4.106 28 H 0.081 0.919 29 C -0.108 4.108 30 N -0.205 5.205 31 N -0.066 5.066 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.202 0.798 40 H 0.407 0.593 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.031 0.969 46 H 0.047 0.953 47 H 0.260 0.740 48 H 0.027 0.973 49 H 0.046 0.954 50 H 0.071 0.929 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.847 12.641 -33.359 37.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.228 4.228 4 N -0.141 5.141 5 C -0.063 4.063 6 C -0.241 4.241 7 C 0.388 3.612 8 O -0.415 6.415 9 N -0.359 5.359 10 C 0.044 3.956 11 H 0.106 0.894 12 C -0.163 4.163 13 C -0.141 4.141 14 C -0.123 4.123 15 H 0.093 0.907 16 C -0.007 4.007 17 N -0.345 5.345 18 C -0.444 4.444 19 H 0.094 0.906 20 C -0.222 4.222 21 N -0.574 5.574 22 Si 0.906 3.094 23 H -0.226 1.226 24 H -0.214 1.214 25 H -0.232 1.232 26 C 0.019 3.981 27 C -0.126 4.126 28 H 0.099 0.901 29 C -0.146 4.146 30 N -0.079 5.079 31 N -0.045 5.045 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.219 0.781 40 H 0.243 0.757 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.070 0.930 48 H 0.045 0.955 49 H 0.064 0.936 50 H 0.090 0.910 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.998 13.250 -32.878 36.571 hybrid contribution -0.977 -0.695 -0.697 1.387 sum -9.976 12.555 -33.575 37.207 Atomic orbital electron populations 1.22266 0.92363 1.03947 1.03952 1.21667 0.95769 0.93461 0.84926 1.22279 1.02747 0.93241 1.04523 1.50776 1.44428 1.09725 1.09201 1.23277 0.97322 1.01142 0.84530 1.21522 1.14595 0.90756 0.97213 1.16761 0.76860 0.84338 0.83237 1.90819 1.54598 1.26842 1.69260 1.45963 1.65589 1.12793 1.11559 1.21172 0.97065 0.98210 0.79120 0.89371 1.21894 0.95659 1.01365 0.97347 1.21276 1.01438 0.96662 0.94677 1.21866 0.96653 0.96641 0.97187 0.90736 1.21674 0.94895 0.92227 0.91893 1.45414 1.34328 1.43535 1.11259 1.20183 1.31282 1.07326 0.85609 0.90603 1.25885 0.98251 1.05676 0.92418 1.70894 1.48005 1.11557 1.26964 0.83822 0.76025 0.76069 0.73508 1.22581 1.21387 1.23162 1.21388 0.93789 0.93542 0.89423 1.22121 0.96574 1.00204 0.93687 0.90085 1.21578 1.02105 0.95273 0.95681 1.74639 1.11126 1.23302 0.98812 1.82000 1.18182 0.91867 1.12477 0.91157 0.91382 0.89569 0.86725 0.91034 0.89163 0.90968 0.78130 0.75746 0.91914 0.91548 0.91362 0.91431 0.95224 0.93529 0.92980 0.95541 0.93598 0.90993 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.40 9.52 37.15 0.35 -0.05 16 2 C 0.14 0.47 3.96 -67.93 -0.27 0.20 16 3 C -0.17 -0.26 8.85 37.16 0.33 0.07 16 4 N -0.36 -2.54 3.54 -54.57 -0.19 -2.73 16 5 C 0.09 0.74 10.40 -16.84 -0.18 0.57 16 6 C -0.10 -1.08 6.99 -83.55 -0.58 -1.67 16 7 C 0.60 7.39 7.74 -12.48 -0.10 7.29 16 8 O -0.54 -7.89 16.46 5.28 0.09 -7.81 16 9 N -0.71 -7.96 5.05 -54.67 -0.28 -8.24 16 10 C 0.15 1.82 2.43 -67.75 -0.16 1.65 16 11 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 12 C -0.12 -1.55 5.34 -26.53 -0.14 -1.69 16 13 C -0.10 -1.45 5.71 -27.08 -0.15 -1.61 16 14 C -0.10 -1.76 2.29 -90.35 -0.21 -1.97 16 15 H 0.07 1.20 7.94 -51.93 -0.41 0.79 16 16 C 0.12 2.60 4.29 -3.43 -0.01 2.58 16 17 N -0.62 -15.45 3.36 -170.28 -0.57 -16.02 16 18 C -0.32 -9.31 10.59 -15.06 -0.16 -9.47 16 19 H 0.08 2.35 8.06 -52.48 -0.42 1.92 16 20 C -0.02 -0.71 5.50 -17.43 -0.10 -0.81 16 21 N -0.93 -30.02 13.70 55.49 0.76 -29.26 16 22 Si 1.07 27.69 24.52 -169.99 -4.17 23.53 16 23 H -0.30 -7.42 6.80 56.52 0.38 -7.03 16 24 H -0.29 -6.78 5.47 56.52 0.31 -6.47 16 25 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 26 C 0.14 2.89 6.90 -2.70 -0.02 2.87 16 27 C -0.11 -1.72 2.50 -89.77 -0.22 -1.94 16 28 H 0.08 1.38 8.03 -51.93 -0.42 0.97 16 29 C -0.11 -1.34 5.15 -27.01 -0.14 -1.48 16 30 N -0.21 -2.33 12.04 32.85 0.40 -1.93 16 31 N -0.07 -0.68 13.78 60.35 0.83 0.15 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 35 H 0.11 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 38 H 0.07 0.10 7.23 -51.93 -0.38 -0.28 16 39 H 0.20 1.04 7.34 -52.49 -0.39 0.66 16 40 H 0.41 4.04 8.27 -40.82 -0.34 3.71 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 43 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.70 3.91 -51.93 -0.20 0.50 16 46 H 0.05 1.09 6.78 -51.93 -0.35 0.74 16 47 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 50 H 0.07 0.84 7.99 -51.93 -0.41 0.43 16 51 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 397.53 15.07 5.99 5.99 Total: -1.00 -36.12 397.53 -7.37 -43.49 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -8.46 Total: -1.71 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.76 Total: -5.46 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.95 Total: -58.03 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.81 kcal Atomic # 14 Polarization: 27.69 SS G_CDS: -4.17 Total: 23.53 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.12 -7.37 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980224559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.763 kcal (2) G-P(sol) polarization free energy of solvation -36.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds