Wall clock time and date at job start Wed Apr 1 2020 05:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47271 * 2 1 4 4 N 1.46502 * 109.47174 * 120.00024 * 2 1 3 5 5 C 1.34809 * 126.59200 * 274.99573 * 4 2 1 6 6 C 1.36600 * 106.84165 * 180.02562 * 5 4 2 7 7 C 1.47520 * 125.77353 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99993 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99544 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99623 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.02130 * 36.06589 * 10 9 7 12 12 C 1.52530 * 108.97665 * 277.16101 * 10 9 7 13 13 C 1.53841 * 111.65819 * 185.42299 * 12 10 9 14 14 C 1.51447 * 107.04724 * 57.20039 * 13 12 10 15 15 H 1.08997 * 110.22455 * 54.38463 * 14 13 12 16 16 C 1.52330 * 117.44800 * 181.24570 * 14 13 12 17 17 N 1.48237 * 105.86949 * 145.29637 * 16 14 13 18 18 C 1.36939 * 125.78341 * 176.79367 * 17 16 14 19 19 H 1.08003 * 119.99550 * 193.37526 * 18 17 16 20 20 C 1.38807 * 120.00028 * 13.37910 * 18 17 16 21 21 N 1.31623 * 119.99966 * 192.67245 * 20 18 17 22 22 Si 1.86799 * 120.00175 * 12.67113 * 20 18 17 23 23 H 1.48505 * 109.47088 * 54.52385 * 22 20 18 24 24 H 1.48500 * 109.47129 * 294.52591 * 22 20 18 25 25 H 1.48497 * 109.47060 * 174.52424 * 22 20 18 26 26 C 1.48656 * 108.43053 * 357.06192 * 17 16 14 27 27 C 1.53300 * 103.32704 * 335.27985 * 26 17 16 28 28 H 1.08999 * 110.75309 * 284.62123 * 27 26 17 29 29 C 1.51620 * 116.58219 * 156.07688 * 27 26 17 30 30 N 1.34408 * 108.45597 * 0.24766 * 6 5 4 31 31 N 1.28767 * 109.51820 * 359.58229 * 30 6 5 32 32 H 1.09004 * 109.47179 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47204 * 300.00178 * 1 2 3 34 34 H 1.08998 * 109.47115 * 59.99999 * 1 2 3 35 35 H 1.08997 * 109.47204 * 239.99822 * 2 1 3 36 36 H 1.08997 * 109.47433 * 180.02562 * 3 2 1 37 37 H 1.09007 * 109.46822 * 299.99994 * 3 2 1 38 38 H 1.08997 * 109.47151 * 59.99790 * 3 2 1 39 39 H 1.08002 * 126.58598 * 0.02562 * 5 4 2 40 40 H 0.96995 * 120.00324 * 0.02562 * 9 7 6 41 41 H 1.09000 * 109.04098 * 305.97885 * 12 10 9 42 42 H 1.08990 * 109.04363 * 64.86065 * 12 10 9 43 43 H 1.08999 * 109.94234 * 297.81474 * 13 12 10 44 44 H 1.08999 * 109.93728 * 176.58131 * 13 12 10 45 45 H 1.08998 * 110.16947 * 26.19457 * 16 14 13 46 46 H 1.08999 * 110.16892 * 264.40129 * 16 14 13 47 47 H 0.96997 * 119.99803 * 5.23365 * 21 20 18 48 48 H 1.09001 * 110.62888 * 93.85909 * 26 17 16 49 49 H 1.08998 * 110.62938 * 216.88158 * 26 17 16 50 50 H 1.09002 * 109.94255 * 303.30395 * 29 27 26 51 51 H 1.09005 * 109.94014 * 64.54609 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1973 -0.1514 2.4187 6 6 2.6643 -1.1488 3.2267 7 6 3.0018 -1.0136 4.6564 8 8 2.8704 0.0593 5.2133 9 7 3.4559 -2.0794 5.3452 10 6 3.7917 -1.9450 6.7650 11 1 3.0896 -1.2544 7.2322 12 6 5.2029 -1.3798 6.8896 13 6 5.6705 -1.3381 8.3546 14 6 5.5785 -2.7517 8.8904 15 1 6.1365 -3.4345 8.2497 16 6 5.9631 -2.9769 10.3470 17 7 5.0629 -4.0448 10.8435 18 6 5.1005 -4.6080 12.0912 19 1 4.5545 -5.5184 12.2893 20 6 5.8404 -4.0086 13.1011 21 7 6.0843 -4.6642 14.2161 22 14 6.4901 -2.2715 12.8780 23 1 5.3666 -1.3630 12.5350 24 1 7.4923 -2.2548 11.7823 25 1 7.1279 -1.8157 14.1392 26 6 4.1166 -4.4054 9.7552 27 6 4.0713 -3.1391 8.8923 28 1 3.4752 -2.3643 9.3744 29 6 3.6680 -3.3205 7.4420 30 7 2.7700 -2.2729 2.4974 31 7 2.3900 -2.0393 1.2895 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 3.1299 1.4425 -0.0005 37 1 1.6766 1.9563 -0.8901 38 1 1.6766 1.9563 0.8899 39 1 2.0079 0.8728 2.7045 40 1 3.5611 -2.9351 4.9009 41 1 5.8878 -2.0037 6.3153 42 1 5.2184 -0.3689 6.4824 43 1 5.0234 -0.6786 8.9328 44 1 6.7013 -0.9876 8.4059 45 1 5.8136 -2.0623 10.9209 46 1 7.0022 -3.2989 10.4159 47 1 5.8132 -5.5915 14.3026 48 1 4.4957 -5.2508 9.1811 49 1 3.1301 -4.6277 10.1621 50 1 4.3338 -4.0346 6.9575 51 1 2.6379 -3.6723 7.3839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980224559.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:09 Heat of formation + Delta-G solvation = 57.090920 kcal Electronic energy + Delta-G solvation = -30526.722682 eV Core-core repulsion = 26462.644301 eV Total energy + Delta-G solvation = -4064.078381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.29255 -41.34192 -40.10362 -37.43612 -37.26803 -35.14642 -33.81515 -32.55269 -32.45699 -31.88615 -30.37689 -28.40012 -28.27215 -26.54085 -25.14010 -24.50924 -23.30785 -22.33320 -21.99184 -21.80516 -21.33355 -20.91057 -19.55768 -19.09362 -17.31137 -17.18781 -17.08089 -16.86617 -16.34878 -16.02054 -15.88520 -15.62769 -15.52063 -15.30115 -15.23135 -14.87278 -14.77017 -14.21097 -13.84222 -13.77832 -13.61916 -13.46376 -13.31773 -13.19690 -13.18907 -13.07196 -12.73221 -12.55034 -12.45152 -12.36876 -12.09697 -12.05754 -12.00426 -11.80200 -11.39787 -11.33950 -11.33460 -11.18074 -11.09862 -10.94198 -10.59196 -10.41579 -10.00691 -9.06809 -8.64190 -5.46800 0.13823 0.60216 1.05459 1.40521 1.49819 1.72037 2.07169 2.23043 2.55195 3.10632 3.15086 3.26502 3.32893 3.49343 3.63334 3.72813 3.79124 3.81243 3.93121 4.00315 4.06598 4.22725 4.29496 4.32165 4.43178 4.47285 4.51970 4.58929 4.60107 4.61999 4.63674 4.66703 4.76499 4.78961 4.85423 4.90369 4.93123 5.04547 5.09710 5.15585 5.16857 5.20166 5.20928 5.33667 5.38369 5.45698 5.49148 5.54429 5.59343 6.10511 6.43170 6.81735 6.89452 7.14010 7.43719 8.11551 8.88833 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.032997 B = 0.001912 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.369681 B =14639.335309 C =15076.843512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 C -0.166 4.166 4 N -0.343 5.343 5 C 0.107 3.893 6 C -0.123 4.123 7 C 0.606 3.394 8 O -0.567 6.567 9 N -0.702 5.702 10 C 0.154 3.846 11 H 0.075 0.925 12 C -0.115 4.115 13 C -0.098 4.098 14 C -0.095 4.095 15 H 0.089 0.911 16 C 0.108 3.892 17 N -0.640 5.640 18 C -0.306 4.306 19 H 0.044 0.956 20 C -0.082 4.082 21 N -0.968 5.968 22 Si 1.110 2.890 23 H -0.285 1.285 24 H -0.252 1.252 25 H -0.313 1.313 26 C 0.138 3.862 27 C -0.092 4.092 28 H 0.072 0.928 29 C -0.096 4.096 30 N -0.223 5.223 31 N -0.091 5.091 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.122 0.878 36 H 0.063 0.937 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.228 0.772 40 H 0.415 0.585 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.025 0.975 46 H 0.035 0.965 47 H 0.246 0.754 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.088 0.912 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.162 14.972 -37.194 41.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 C -0.224 4.224 4 N -0.128 5.128 5 C -0.051 4.051 6 C -0.264 4.264 7 C 0.391 3.609 8 O -0.445 6.445 9 N -0.352 5.352 10 C 0.050 3.950 11 H 0.093 0.907 12 C -0.153 4.153 13 C -0.136 4.136 14 C -0.114 4.114 15 H 0.107 0.893 16 C -0.015 4.015 17 N -0.369 5.369 18 C -0.435 4.435 19 H 0.062 0.938 20 C -0.274 4.274 21 N -0.612 5.612 22 Si 0.938 3.062 23 H -0.212 1.212 24 H -0.177 1.177 25 H -0.242 1.242 26 C 0.014 3.986 27 C -0.112 4.112 28 H 0.091 0.909 29 C -0.134 4.134 30 N -0.096 5.096 31 N -0.070 5.070 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.140 0.860 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.096 0.904 39 H 0.244 0.756 40 H 0.252 0.748 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.056 0.944 50 H 0.106 0.894 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.337 15.547 -36.810 41.035 hybrid contribution -0.996 -1.486 0.399 1.833 sum -10.333 14.061 -36.412 40.377 Atomic orbital electron populations 1.22265 0.91456 1.03237 1.05154 1.22102 0.96425 0.94328 0.83690 1.22304 1.02253 0.91894 1.05943 1.51096 1.42915 1.08778 1.10027 1.23666 0.95570 1.01663 0.84193 1.21473 1.16434 0.91639 0.96810 1.16916 0.76256 0.83951 0.83772 1.90801 1.55912 1.27805 1.69984 1.45838 1.65228 1.13078 1.11028 1.20991 0.96803 0.97547 0.79646 0.90692 1.21798 0.95791 1.01662 0.96093 1.21262 1.02324 0.94559 0.95486 1.21826 0.96748 0.98911 0.93892 0.89285 1.21796 0.93753 0.90754 0.95237 1.45565 1.36482 1.44062 1.10756 1.20093 1.29461 1.06051 0.87920 0.93779 1.27150 0.99225 1.08885 0.92180 1.70994 1.50495 1.11120 1.28625 0.83379 0.76801 0.71937 0.74093 1.21218 1.17689 1.24232 1.21569 0.92396 0.95857 0.88817 1.21957 0.96401 0.97501 0.95306 0.90911 1.21476 1.03208 0.95896 0.92862 1.74601 1.11804 1.23982 0.99247 1.81920 1.19151 0.93713 1.12245 0.92786 0.91484 0.87065 0.86028 0.91782 0.86886 0.90440 0.75553 0.74840 0.90605 0.91627 0.91876 0.90171 0.95771 0.94740 0.94467 0.94394 0.94394 0.89383 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.40 9.52 71.98 0.69 0.29 16 2 C 0.13 0.56 3.96 44.99 0.18 0.73 16 3 C -0.17 0.00 8.85 71.98 0.64 0.64 16 4 N -0.34 -4.25 3.54 -326.55 -1.16 -5.41 16 5 C 0.11 1.46 10.40 83.85 0.87 2.33 16 6 C -0.12 -2.44 6.99 40.82 0.29 -2.15 16 7 C 0.61 13.73 7.74 86.69 0.67 14.40 16 8 O -0.57 -15.63 16.46 -4.01 -0.07 -15.69 16 9 N -0.70 -14.11 5.05 -445.14 -2.25 -16.36 16 10 C 0.15 3.37 2.43 45.11 0.11 3.48 16 11 H 0.07 1.90 7.58 -2.39 -0.02 1.88 16 12 C -0.11 -2.49 5.34 30.72 0.16 -2.33 16 13 C -0.10 -2.48 5.71 30.37 0.17 -2.31 16 14 C -0.09 -2.94 2.29 -10.62 -0.02 -2.97 16 15 H 0.09 2.54 7.94 -2.39 -0.02 2.52 16 16 C 0.11 4.62 4.29 85.82 0.37 4.99 16 17 N -0.64 -31.94 3.36 -692.64 -2.33 -34.27 16 18 C -0.31 -18.50 10.59 84.03 0.89 -17.62 16 19 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 20 C -0.08 -5.10 5.50 84.86 0.47 -4.64 16 21 N -0.97 -64.50 13.70 21.65 0.30 -64.21 16 22 Si 1.11 56.15 24.52 68.60 1.68 57.83 16 23 H -0.28 -13.65 6.80 99.48 0.68 -12.97 16 24 H -0.25 -11.24 5.47 99.48 0.54 -10.70 16 25 H -0.31 -16.23 7.11 99.48 0.71 -15.53 16 26 C 0.14 5.40 6.90 86.06 0.59 5.99 16 27 C -0.09 -2.78 2.50 -10.24 -0.03 -2.80 16 28 H 0.07 2.35 8.03 -2.39 -0.02 2.33 16 29 C -0.10 -2.10 5.15 30.41 0.16 -1.95 16 30 N -0.22 -4.81 12.04 -49.99 -0.60 -5.41 16 31 N -0.09 -1.78 13.78 37.02 0.51 -1.27 16 32 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 35 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.11 -0.47 8.14 -2.38 -0.02 -0.49 16 38 H 0.08 -0.05 7.23 -2.39 -0.02 -0.07 16 39 H 0.23 1.71 7.34 -2.91 -0.02 1.68 16 40 H 0.41 7.22 8.27 -92.71 -0.77 6.46 16 41 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 42 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 43 H 0.06 1.68 8.04 -2.39 -0.02 1.66 16 44 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.02 1.10 3.91 -2.39 -0.01 1.09 16 46 H 0.03 1.55 6.78 -2.39 -0.02 1.54 16 47 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 48 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 50 H 0.09 1.71 7.99 -2.39 -0.02 1.69 16 51 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -81.31 397.53 2.23 -79.09 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -0.06 Total: 9.60 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 6.20 Total: -3.90 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -5.53 Total: -126.92 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.07 Total: -15.69 kcal Atomic # 14 Polarization: 56.15 SS G_CDS: 1.68 Total: 57.83 kcal Total: -81.31 2.23 -79.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980224559.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.176 kcal (2) G-P(sol) polarization free energy of solvation -81.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds