Wall clock time and date at job start Wed Apr 1 2020 05:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 5 5 C 1.34818 * 126.59440 * 84.99925 * 4 2 1 6 6 C 1.36590 * 106.84503 * 179.97438 * 5 4 2 7 7 C 1.47521 * 125.77363 * 180.02562 * 6 5 4 8 8 O 1.21589 * 120.00207 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00192 * 179.97438 * 9 7 6 11 11 H 1.08994 * 109.02979 * 34.99907 * 10 9 7 12 12 C 1.52529 * 109.04370 * 276.03650 * 10 9 7 13 13 C 1.53802 * 111.71384 * 293.49215 * 12 10 9 14 14 C 1.51628 * 107.03224 * 302.45645 * 13 12 10 15 15 H 1.08992 * 110.50863 * 304.78292 * 14 13 12 16 16 C 1.53060 * 116.66733 * 176.21646 * 14 13 12 17 17 N 1.48660 * 103.44412 * 204.13621 * 16 14 13 18 18 C 1.36946 * 125.78058 * 204.35641 * 17 16 14 19 19 H 1.07997 * 119.99414 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00046 * 0.02803 * 18 17 16 21 21 N 1.31615 * 120.00343 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99559 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47309 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46786 * 120.00286 * 22 20 18 25 25 H 1.48503 * 109.47205 * 239.99887 * 22 20 18 26 26 C 1.48243 * 108.43337 * 24.38280 * 17 16 14 27 27 C 1.52317 * 105.86114 * 3.18397 * 26 17 16 28 28 H 1.09002 * 109.88141 * 87.66507 * 27 26 17 29 29 C 1.51289 * 117.48381 * 214.68280 * 27 26 17 30 30 N 1.34404 * 108.45493 * 359.97438 * 6 5 4 31 31 N 1.28758 * 109.52618 * 359.74839 * 30 6 5 32 32 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 33 33 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 34 34 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 36 36 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 37 37 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 38 38 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 39 39 H 1.08010 * 126.57690 * 359.93373 * 5 4 2 40 40 H 0.97003 * 120.00194 * 0.02562 * 9 7 6 41 41 H 1.09008 * 109.03108 * 54.06888 * 12 10 9 42 42 H 1.08999 * 109.02968 * 172.98515 * 12 10 9 43 43 H 1.09002 * 109.94525 * 61.83243 * 13 12 10 44 44 H 1.08996 * 109.94887 * 183.08019 * 13 12 10 45 45 H 1.08994 * 110.63050 * 322.63396 * 16 14 13 46 46 H 1.09005 * 110.62272 * 85.64951 * 16 14 13 47 47 H 0.96991 * 120.00121 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.17128 * 244.08389 * 26 17 16 49 49 H 1.08999 * 110.17193 * 122.28607 * 26 17 16 50 50 H 1.09008 * 109.95158 * 59.39906 * 29 27 26 51 51 H 1.08993 * 109.84968 * 298.21125 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1973 -0.1514 -2.4187 6 6 2.6643 -1.1488 -3.2267 7 6 3.0017 -1.0137 -4.6564 8 8 2.8711 0.0594 -5.2131 9 7 3.4559 -2.0793 -5.3453 10 6 3.7905 -1.9452 -6.7653 11 1 4.2095 -0.9543 -6.9397 12 6 2.5188 -2.1007 -7.5931 13 6 1.9487 -3.5260 -7.4981 14 6 3.0379 -4.4721 -7.9646 15 1 3.3824 -4.1961 -8.9611 16 6 2.7325 -5.9692 -7.8744 17 7 4.0798 -6.5929 -7.8001 18 6 4.3900 -7.8751 -8.1679 19 1 5.4044 -8.2334 -8.0739 20 6 3.4005 -8.7141 -8.6617 21 7 2.1643 -8.2773 -8.7769 22 14 3.8238 -10.4628 -9.1641 23 1 5.2714 -10.7058 -8.9390 24 1 3.0295 -11.4177 -8.3500 25 1 3.5068 -10.6552 -10.6021 26 6 5.0306 -5.5921 -7.2598 27 6 4.1967 -4.3604 -6.9318 28 1 3.8003 -4.4399 -5.9195 29 6 4.8406 -3.0067 -7.1360 30 7 2.7655 -2.2740 -2.4986 31 7 2.3959 -2.0378 -1.2879 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 0.8900 36 1 1.6768 1.9562 0.8900 37 1 3.1300 1.4424 0.0005 38 1 1.6767 1.9563 -0.8900 39 1 2.0071 0.8726 -2.7047 40 1 3.5605 -2.9353 -4.9011 41 1 1.7713 -1.3940 -7.2325 42 1 2.7442 -1.8779 -8.6360 43 1 1.6784 -3.7503 -6.4662 44 1 1.0739 -3.6203 -8.1415 45 1 2.1568 -6.1902 -6.9757 46 1 2.2015 -6.3069 -8.7645 47 1 1.4730 -8.8634 -9.1222 48 1 5.7843 -5.3474 -8.0081 49 1 5.5067 -5.9750 -6.3571 50 1 5.1362 -2.8889 -8.1786 51 1 5.7118 -2.9098 -6.4883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980224561.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:52:15 Heat of formation + Delta-G solvation = 79.455127 kcal Electronic energy + Delta-G solvation = -31074.251410 eV Core-core repulsion = 27011.142814 eV Total energy + Delta-G solvation = -4063.108596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.46568 -40.18005 -38.53904 -36.90094 -35.57975 -33.21246 -31.91514 -31.78159 -31.19724 -30.29993 -28.77554 -28.04957 -26.24279 -25.12970 -24.48476 -23.65753 -21.90745 -21.17583 -21.03516 -20.47206 -19.70827 -18.83200 -18.33107 -16.67326 -16.52177 -16.32757 -15.90270 -15.34256 -14.99948 -14.91422 -14.80867 -14.45415 -14.15718 -13.86000 -13.70238 -13.50235 -13.26403 -13.17064 -12.99019 -12.58043 -12.47006 -12.32011 -12.21254 -12.01083 -11.85820 -11.85453 -11.41348 -11.40392 -11.10380 -10.94653 -10.78485 -10.69195 -10.64639 -10.54613 -10.11241 -9.97638 -9.83520 -9.75231 -9.53253 -9.44259 -9.16112 -8.83508 -8.58772 -6.74887 -5.57358 -2.97916 0.91173 1.58503 1.69505 3.15667 3.26026 3.44534 3.49810 3.52406 3.79072 4.00054 4.11282 4.31012 4.47713 4.54425 4.67396 4.78009 4.83810 4.91273 4.95524 4.97771 4.99006 5.13674 5.16413 5.39003 5.41218 5.43310 5.45418 5.58993 5.59374 5.73170 5.75680 5.82637 5.92025 6.10067 6.10503 6.23676 6.26954 6.33300 6.34835 6.46792 6.57636 6.67737 6.73136 6.75917 6.93976 7.12768 7.48534 7.63372 7.70088 7.80513 7.94145 8.19102 8.41470 9.28223 9.89536 10.56714 11.47106 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.002286 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.422293 B =12247.593159 C =13062.882563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.143 3.857 3 C -0.169 4.169 4 N -0.357 5.357 5 C 0.092 3.908 6 C -0.101 4.101 7 C 0.605 3.395 8 O -0.547 6.547 9 N -0.703 5.703 10 C 0.151 3.849 11 H 0.085 0.915 12 C -0.126 4.126 13 C -0.101 4.101 14 C -0.114 4.114 15 H 0.069 0.931 16 C 0.164 3.836 17 N -0.608 5.608 18 C -0.217 4.217 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.144 3.856 27 C -0.109 4.109 28 H 0.066 0.934 29 C -0.109 4.109 30 N -0.201 5.201 31 N -0.064 5.064 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.114 0.886 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.201 0.799 40 H 0.410 0.590 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.062 0.938 45 H 0.012 0.988 46 H 0.103 0.897 47 H 0.250 0.750 48 H 0.022 0.978 49 H 0.024 0.976 50 H 0.081 0.919 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.042 23.087 16.266 28.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 C -0.227 4.227 4 N -0.143 5.143 5 C -0.065 4.065 6 C -0.240 4.240 7 C 0.389 3.611 8 O -0.424 6.424 9 N -0.355 5.355 10 C 0.047 3.953 11 H 0.103 0.897 12 C -0.165 4.165 13 C -0.139 4.139 14 C -0.133 4.133 15 H 0.088 0.912 16 C 0.040 3.960 17 N -0.335 5.335 18 C -0.346 4.346 19 H 0.094 0.906 20 C -0.210 4.210 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.018 3.982 27 C -0.128 4.128 28 H 0.084 0.916 29 C -0.147 4.147 30 N -0.075 5.075 31 N -0.044 5.044 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.132 0.868 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.218 0.782 40 H 0.247 0.753 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.030 0.970 46 H 0.121 0.879 47 H 0.061 0.939 48 H 0.040 0.960 49 H 0.042 0.958 50 H 0.099 0.901 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.069 22.325 16.565 27.877 hybrid contribution 0.021 -0.395 -0.266 0.477 sum -2.048 21.930 16.300 27.400 Atomic orbital electron populations 1.22265 0.92412 1.04010 1.03836 1.21641 0.95744 0.93384 0.85045 1.22269 1.02693 0.93341 1.04410 1.50785 1.44449 1.09916 1.09137 1.23234 0.97551 1.01052 0.84656 1.21536 1.14551 0.90606 0.97317 1.16745 0.76989 0.84248 0.83165 1.90781 1.54873 1.27143 1.69586 1.46066 1.65167 1.12864 1.11364 1.21120 0.95268 0.99870 0.79009 0.89682 1.21924 0.96762 0.97923 0.99868 1.21275 0.98123 0.93363 1.01126 1.22394 0.94945 0.98377 0.97618 0.91216 1.21617 0.87241 0.85315 1.01851 1.45142 1.04133 1.09552 1.74640 1.19135 0.94484 0.86500 1.34440 0.90551 1.24769 0.95532 0.98494 1.02157 1.69828 1.00378 1.34590 1.52349 0.86025 0.77353 0.84447 0.77859 1.20600 1.21868 1.21853 1.20966 0.92602 0.88704 0.95904 1.21766 0.98079 0.93498 0.99461 0.91568 1.21571 0.96805 0.93986 1.02382 1.74686 1.11030 1.23110 0.98680 1.82032 1.18173 0.91753 1.12413 0.91418 0.89655 0.91097 0.86760 0.89261 0.91081 0.91024 0.78233 0.75318 0.91968 0.91220 0.92247 0.91946 0.96985 0.87903 0.93926 0.95963 0.95840 0.90055 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 9.52 37.16 0.35 -0.29 16 2 C 0.14 0.67 3.96 -67.94 -0.27 0.40 16 3 C -0.17 -0.44 8.85 37.15 0.33 -0.11 16 4 N -0.36 -3.15 3.54 -54.57 -0.19 -3.34 16 5 C 0.09 0.86 10.40 -16.83 -0.18 0.69 16 6 C -0.10 -1.27 6.99 -83.55 -0.58 -1.86 16 7 C 0.60 8.41 7.72 -12.48 -0.10 8.31 16 8 O -0.55 -8.49 16.51 5.29 0.09 -8.40 16 9 N -0.70 -9.55 4.66 -54.66 -0.25 -9.80 16 10 C 0.15 2.01 2.70 -67.73 -0.18 1.83 16 11 H 0.09 1.12 7.55 -51.93 -0.39 0.73 16 12 C -0.13 -1.75 5.42 -26.56 -0.14 -1.89 16 13 C -0.10 -1.62 5.57 -27.01 -0.15 -1.77 16 14 C -0.11 -2.14 2.50 -89.89 -0.22 -2.37 16 15 H 0.07 1.34 8.01 -51.93 -0.42 0.92 16 16 C 0.16 4.03 5.53 -2.82 -0.02 4.01 16 17 N -0.61 -15.90 3.45 -170.42 -0.59 -16.48 16 18 C -0.22 -6.19 10.30 -15.06 -0.16 -6.34 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 21 N -0.92 -27.44 10.11 55.49 0.56 -26.88 16 22 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 C 0.14 3.03 6.98 -3.43 -0.02 3.01 16 27 C -0.11 -1.88 2.23 -90.44 -0.20 -2.08 16 28 H 0.07 1.16 6.13 -51.93 -0.32 0.84 16 29 C -0.11 -1.50 5.35 -27.16 -0.15 -1.64 16 30 N -0.20 -2.81 12.04 32.85 0.40 -2.42 16 31 N -0.06 -0.81 13.78 60.35 0.83 0.03 16 32 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.07 8.14 -51.93 -0.42 -0.36 16 37 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.07 0.16 7.23 -51.93 -0.38 -0.21 16 39 H 0.20 1.28 7.35 -52.48 -0.39 0.89 16 40 H 0.41 5.70 6.51 -40.82 -0.27 5.43 16 41 H 0.06 0.88 8.10 -51.92 -0.42 0.46 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.06 0.99 7.84 -51.93 -0.41 0.58 16 44 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.10 2.86 5.93 -51.93 -0.31 2.55 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.02 0.46 8.08 -51.93 -0.42 0.04 16 49 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.08 1.08 8.03 -51.92 -0.42 0.66 16 51 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 400.91 15.07 6.04 6.04 Total: -1.00 -34.15 400.91 -8.24 -42.40 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -8.32 Total: 1.92 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.78 Total: -0.60 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 0.75 Total: -58.90 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.15 -8.24 -42.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980224561.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.854 kcal (2) G-P(sol) polarization free energy of solvation -34.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds