Wall clock time and date at job start Wed Apr 1 2020 05:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47013 * 2 1 4 4 N 1.46492 * 109.46781 * 120.00343 * 2 1 3 5 5 C 1.34821 * 126.59672 * 274.99629 * 4 2 1 6 6 C 1.36591 * 106.83961 * 180.02562 * 5 4 2 7 7 C 1.47520 * 125.76868 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00368 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99933 * 179.97438 * 7 6 5 10 10 C 1.47171 * 125.65044 * 359.97042 * 9 7 6 11 11 C 1.55348 * 106.96480 * 181.00176 * 10 9 7 12 12 H 1.09003 * 112.90867 * 214.96612 * 11 10 9 13 13 C 1.53001 * 106.41734 * 91.60167 * 11 10 9 14 14 C 1.52591 * 111.05316 * 197.20963 * 13 11 10 15 15 C 1.53326 * 108.40992 * 62.35255 * 14 13 11 16 16 C 1.52832 * 108.09617 * 295.87473 * 15 14 13 17 17 H 1.08998 * 108.96270 * 298.37929 * 16 15 14 18 18 N 1.46496 * 109.02669 * 179.49792 * 16 15 14 19 19 C 1.36945 * 119.99718 * 82.76666 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.50734 * 111.73931 * 58.91557 * 16 15 14 28 28 H 1.09005 * 109.26673 * 186.23032 * 27 16 15 29 29 C 1.47819 * 125.64849 * 180.02562 * 9 7 6 30 30 N 1.34407 * 108.46279 * 0.23710 * 6 5 4 31 31 N 1.28761 * 109.51662 * 359.59520 * 30 6 5 32 32 H 1.09001 * 109.46792 * 300.00000 * 1 2 3 33 33 H 1.09004 * 109.46686 * 59.99894 * 1 2 3 34 34 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46534 * 240.00483 * 2 1 3 36 36 H 1.09004 * 109.46856 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.47821 * 300.00293 * 3 2 1 38 38 H 1.09001 * 109.47341 * 60.00337 * 3 2 1 39 39 H 1.07997 * 126.57799 * 0.02562 * 5 4 2 40 40 H 1.08997 * 109.96285 * 61.62565 * 10 9 7 41 41 H 1.09005 * 109.99099 * 300.39259 * 10 9 7 42 42 H 1.09004 * 109.16572 * 317.61326 * 13 11 10 43 43 H 1.08996 * 109.16515 * 76.85566 * 13 11 10 44 44 H 1.08995 * 109.67826 * 182.08420 * 14 13 11 45 45 H 1.09002 * 109.67422 * 302.62615 * 14 13 11 46 46 H 1.09000 * 109.74248 * 176.22720 * 15 14 13 47 47 H 1.09005 * 109.74024 * 55.52516 * 15 14 13 48 48 H 0.96996 * 120.00499 * 262.76396 * 18 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.08999 * 110.50969 * 84.66373 * 29 9 7 51 51 H 1.08996 * 110.51392 * 321.95985 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1973 -0.1515 2.4188 6 6 2.6642 -1.1491 3.2266 7 6 3.0017 -1.0140 4.6563 8 8 2.8711 0.0590 5.2131 9 7 3.4547 -2.0800 5.3454 10 6 3.6586 -3.4312 4.7988 11 6 4.1639 -4.3214 5.9674 12 1 4.8830 -5.0751 5.6464 13 6 2.9208 -4.9465 6.6036 14 6 3.2320 -5.4915 7.9944 15 6 3.6622 -4.3219 8.8877 16 6 4.9628 -3.7489 8.3258 17 1 5.7319 -4.5207 8.3554 18 7 5.3866 -2.6205 9.1584 19 6 6.0828 -2.8470 10.3157 20 1 6.3190 -3.8575 10.6147 21 6 6.4848 -1.7778 11.1044 22 7 6.1964 -0.5463 10.7402 23 14 7.4338 -2.0869 12.6834 24 1 7.7434 -0.7898 13.3368 25 1 6.6134 -2.9196 13.5991 26 1 8.6997 -2.7968 12.3692 27 6 4.7962 -3.2755 6.9044 28 1 5.7674 -2.9791 6.5079 29 6 3.8279 -2.0861 6.7757 30 7 2.7697 -2.2731 2.4973 31 7 2.3899 -2.0394 1.2894 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 3.1301 1.4424 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6768 1.9563 0.8900 39 1 2.0079 0.8726 2.7046 40 1 4.4038 -3.4024 4.0039 41 1 2.7176 -3.8229 4.4127 42 1 2.1401 -4.1899 6.6822 43 1 2.5669 -5.7612 5.9719 44 1 2.3424 -5.9637 8.4111 45 1 4.0395 -6.2209 7.9306 46 1 3.8257 -4.6766 9.9053 47 1 2.8897 -3.5529 8.8849 48 1 5.1741 -1.7129 8.8900 49 1 6.4770 0.2008 11.2915 50 1 2.9476 -2.2408 7.3995 51 1 4.3282 -1.1556 7.0438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992872713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:12 Heat of formation + Delta-G solvation = 70.204287 kcal Electronic energy + Delta-G solvation = -31320.023897 eV Core-core repulsion = 27256.514154 eV Total energy + Delta-G solvation = -4063.509743 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.42499 -40.31281 -38.35016 -36.85869 -35.36765 -33.77451 -31.85335 -31.54068 -31.23514 -30.19583 -28.78282 -28.02401 -26.57068 -25.14239 -24.14603 -23.57405 -22.61267 -21.60004 -21.12829 -20.59649 -19.75475 -18.31643 -17.77668 -16.92717 -16.39424 -16.29020 -15.86841 -15.51044 -15.05916 -14.84875 -14.79132 -14.47578 -13.84009 -13.82257 -13.69058 -13.55393 -13.25494 -13.14314 -12.97365 -12.82063 -12.61778 -12.55082 -12.25114 -12.17660 -11.88697 -11.78424 -11.57414 -11.43298 -11.03696 -10.96334 -10.92024 -10.77791 -10.64044 -10.59935 -10.17521 -10.10412 -9.95655 -9.83826 -9.59194 -9.45003 -9.43882 -8.80156 -8.35212 -6.89174 -5.69461 -2.98599 0.95548 1.65826 1.73015 3.08473 3.35865 3.48273 3.52621 3.53768 3.81004 4.04928 4.13930 4.33220 4.43970 4.61595 4.68909 4.72179 4.81522 4.86605 4.95823 4.99882 5.00049 5.01666 5.19178 5.37147 5.44752 5.45767 5.50601 5.53727 5.63453 5.65266 5.68991 5.82597 5.90481 5.94432 5.98328 6.08662 6.14431 6.15065 6.18341 6.34634 6.38880 6.46642 6.53180 6.60921 6.69035 6.83478 6.99683 7.19495 7.65548 7.75807 7.79038 8.27240 8.48689 9.59610 10.17103 10.51569 11.52918 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002448 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.576610 B =11435.110653 C =12635.157795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.170 4.170 4 N -0.357 5.357 5 C 0.092 3.908 6 C -0.092 4.092 7 C 0.611 3.389 8 O -0.539 6.539 9 N -0.601 5.601 10 C 0.113 3.887 11 C -0.092 4.092 12 H 0.096 0.904 13 C -0.110 4.110 14 C -0.118 4.118 15 C -0.135 4.135 16 C 0.192 3.808 17 H 0.049 0.951 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.292 1.292 25 H -0.287 1.287 26 H -0.287 1.287 27 C -0.095 4.095 28 H 0.077 0.923 29 C 0.118 3.882 30 N -0.201 5.201 31 N -0.072 5.072 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.114 0.886 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.202 0.798 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.074 0.926 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 -1.567 -24.501 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.143 5.143 5 C -0.064 4.064 6 C -0.231 4.231 7 C 0.397 3.603 8 O -0.415 6.415 9 N -0.333 5.333 10 C -0.010 4.010 11 C -0.111 4.111 12 H 0.114 0.886 13 C -0.148 4.148 14 C -0.156 4.156 15 C -0.175 4.175 16 C 0.081 3.919 17 H 0.067 0.933 18 N -0.368 5.368 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.218 1.218 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.115 4.115 28 H 0.095 0.905 29 C -0.003 4.003 30 N -0.074 5.074 31 N -0.051 5.051 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.132 0.868 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.218 0.782 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.092 0.908 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.895 -2.268 -24.890 27.680 hybrid contribution 0.279 1.190 1.156 1.682 sum -11.617 -1.078 -23.735 26.447 Atomic orbital electron populations 1.22263 0.92505 1.03849 1.03861 1.21626 0.95660 0.93441 0.85002 1.22276 1.02778 0.93307 1.04441 1.50735 1.44692 1.09783 1.09095 1.23246 0.97590 1.01101 0.84500 1.21466 1.13993 0.90624 0.97064 1.16357 0.77638 0.83199 0.83069 1.90838 1.54963 1.26317 1.69412 1.48376 1.63415 1.09630 1.11879 1.22416 1.01288 0.81349 0.95948 1.22282 0.97472 0.96749 0.94614 0.88613 1.21544 0.96909 0.99741 0.96587 1.21535 1.00482 0.98476 0.95128 1.22306 0.99605 0.96569 0.99065 1.19565 0.94007 0.91255 0.87023 0.93296 1.42522 1.66254 1.03613 1.24393 1.19175 1.26929 0.92593 0.98186 0.91244 1.24735 1.01731 0.95290 0.99191 1.69656 1.51492 0.97395 1.39454 0.86301 0.79867 0.76557 0.83641 1.21802 1.21352 1.21371 1.21753 0.98559 0.94025 0.97114 0.90498 1.22249 0.98537 1.00179 0.79376 1.74736 1.10950 1.23218 0.98530 1.81972 1.18452 0.91854 1.12840 0.91392 0.89698 0.91225 0.86845 0.91032 0.89280 0.90956 0.78174 0.91239 0.90802 0.92115 0.92461 0.92805 0.92207 0.91847 0.92498 0.78169 0.93486 0.90775 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 9.52 37.16 0.35 -0.29 16 2 C 0.14 0.71 3.96 -67.93 -0.27 0.44 16 3 C -0.17 -0.56 8.85 37.15 0.33 -0.23 16 4 N -0.36 -3.26 3.54 -54.57 -0.19 -3.45 16 5 C 0.09 0.96 10.40 -16.83 -0.18 0.79 16 6 C -0.09 -1.27 6.85 -83.55 -0.57 -1.84 16 7 C 0.61 10.17 7.85 -12.48 -0.10 10.07 16 8 O -0.54 -10.46 17.14 5.29 0.09 -10.37 16 9 N -0.60 -9.64 3.34 -171.28 -0.57 -10.21 16 10 C 0.11 1.53 4.81 -2.43 -0.01 1.51 16 11 C -0.09 -1.21 3.61 -88.85 -0.32 -1.53 16 12 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.11 -1.40 4.62 -26.94 -0.12 -1.52 16 14 C -0.12 -1.62 5.93 -26.77 -0.16 -1.78 16 15 C -0.14 -2.38 5.33 -26.65 -0.14 -2.52 16 16 C 0.19 3.70 2.46 -69.15 -0.17 3.53 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 N -0.73 -17.99 5.03 -54.62 -0.27 -18.26 16 19 C -0.24 -6.55 9.89 -15.06 -0.15 -6.70 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.50 13.06 55.49 0.72 -27.78 16 23 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C -0.09 -1.58 2.49 -90.76 -0.23 -1.80 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 C 0.12 2.09 5.08 -2.84 -0.01 2.08 16 30 N -0.20 -2.74 9.78 32.85 0.32 -2.42 16 31 N -0.07 -0.87 13.78 60.35 0.83 -0.04 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 0.23 7.23 -51.93 -0.38 -0.14 16 39 H 0.20 1.57 7.34 -52.49 -0.39 1.19 16 40 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 41 H 0.07 0.96 7.23 -51.93 -0.38 0.59 16 42 H 0.06 0.83 7.15 -51.93 -0.37 0.46 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.06 1.05 6.80 -51.93 -0.35 0.69 16 48 H 0.38 10.21 6.44 -40.82 -0.26 9.94 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 50 H 0.07 1.35 6.15 -51.93 -0.32 1.03 16 51 H 0.09 1.76 7.42 -51.93 -0.39 1.38 16 LS Contribution 399.09 15.07 6.01 6.01 Total: -1.00 -33.95 399.09 -8.19 -42.15 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.27 Total: 7.07 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: -1.84 Total: -0.28 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.84 Total: -62.16 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.37 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.95 -8.19 -42.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992872713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.349 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds