Wall clock time and date at job start Wed Apr 1 2020 05:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47013 * 2 1 4 4 N 1.46492 * 109.46781 * 120.00343 * 2 1 3 5 5 C 1.34821 * 126.59672 * 274.99629 * 4 2 1 6 6 C 1.36591 * 106.83961 * 180.02562 * 5 4 2 7 7 C 1.47520 * 125.76868 * 179.97438 * 6 5 4 8 8 O 1.21591 * 120.00368 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99933 * 179.97438 * 7 6 5 10 10 C 1.47171 * 125.65044 * 359.97042 * 9 7 6 11 11 C 1.55348 * 106.96480 * 181.00176 * 10 9 7 12 12 H 1.09003 * 112.90867 * 214.96612 * 11 10 9 13 13 C 1.53001 * 106.41734 * 91.60167 * 11 10 9 14 14 C 1.52591 * 111.05316 * 197.20963 * 13 11 10 15 15 C 1.53326 * 108.40992 * 62.35255 * 14 13 11 16 16 C 1.52832 * 108.09617 * 295.87473 * 15 14 13 17 17 H 1.08998 * 108.96270 * 298.37929 * 16 15 14 18 18 N 1.46496 * 109.02669 * 179.49792 * 16 15 14 19 19 C 1.36945 * 119.99718 * 82.76666 * 18 16 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 16 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 16 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.50734 * 111.73931 * 58.91557 * 16 15 14 28 28 H 1.09005 * 109.26673 * 186.23032 * 27 16 15 29 29 C 1.47819 * 125.64849 * 180.02562 * 9 7 6 30 30 N 1.34407 * 108.46279 * 0.23710 * 6 5 4 31 31 N 1.28761 * 109.51662 * 359.59520 * 30 6 5 32 32 H 1.09001 * 109.46792 * 300.00000 * 1 2 3 33 33 H 1.09004 * 109.46686 * 59.99894 * 1 2 3 34 34 H 1.08994 * 109.47037 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46534 * 240.00483 * 2 1 3 36 36 H 1.09004 * 109.46856 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.47821 * 300.00293 * 3 2 1 38 38 H 1.09001 * 109.47341 * 60.00337 * 3 2 1 39 39 H 1.07997 * 126.57799 * 0.02562 * 5 4 2 40 40 H 1.08997 * 109.96285 * 61.62565 * 10 9 7 41 41 H 1.09005 * 109.99099 * 300.39259 * 10 9 7 42 42 H 1.09004 * 109.16572 * 317.61326 * 13 11 10 43 43 H 1.08996 * 109.16515 * 76.85566 * 13 11 10 44 44 H 1.08995 * 109.67826 * 182.08420 * 14 13 11 45 45 H 1.09002 * 109.67422 * 302.62615 * 14 13 11 46 46 H 1.09000 * 109.74248 * 176.22720 * 15 14 13 47 47 H 1.09005 * 109.74024 * 55.52516 * 15 14 13 48 48 H 0.96996 * 120.00499 * 262.76396 * 18 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.08999 * 110.50969 * 84.66373 * 29 9 7 51 51 H 1.08996 * 110.51392 * 321.95985 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1973 -0.1515 2.4188 6 6 2.6642 -1.1491 3.2266 7 6 3.0017 -1.0140 4.6563 8 8 2.8711 0.0590 5.2131 9 7 3.4547 -2.0800 5.3454 10 6 3.6586 -3.4312 4.7988 11 6 4.1639 -4.3214 5.9674 12 1 4.8830 -5.0751 5.6464 13 6 2.9208 -4.9465 6.6036 14 6 3.2320 -5.4915 7.9944 15 6 3.6622 -4.3219 8.8877 16 6 4.9628 -3.7489 8.3258 17 1 5.7319 -4.5207 8.3554 18 7 5.3866 -2.6205 9.1584 19 6 6.0828 -2.8470 10.3157 20 1 6.3190 -3.8575 10.6147 21 6 6.4848 -1.7778 11.1044 22 7 6.1964 -0.5463 10.7402 23 14 7.4338 -2.0869 12.6834 24 1 7.7434 -0.7898 13.3368 25 1 6.6134 -2.9196 13.5991 26 1 8.6997 -2.7968 12.3692 27 6 4.7962 -3.2755 6.9044 28 1 5.7674 -2.9791 6.5079 29 6 3.8279 -2.0861 6.7757 30 7 2.7697 -2.2731 2.4973 31 7 2.3899 -2.0394 1.2894 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8901 36 1 3.1301 1.4424 0.0005 37 1 1.6767 1.9564 -0.8899 38 1 1.6768 1.9563 0.8900 39 1 2.0079 0.8726 2.7046 40 1 4.4038 -3.4024 4.0039 41 1 2.7176 -3.8229 4.4127 42 1 2.1401 -4.1899 6.6822 43 1 2.5669 -5.7612 5.9719 44 1 2.3424 -5.9637 8.4111 45 1 4.0395 -6.2209 7.9306 46 1 3.8257 -4.6766 9.9053 47 1 2.8897 -3.5529 8.8849 48 1 5.1741 -1.7129 8.8900 49 1 6.4770 0.2008 11.2915 50 1 2.9476 -2.2408 7.3995 51 1 4.3282 -1.1556 7.0438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992872713.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:51:11 Heat of formation + Delta-G solvation = 47.693429 kcal Electronic energy + Delta-G solvation = -31321.000041 eV Core-core repulsion = 27256.514154 eV Total energy + Delta-G solvation = -4064.485887 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.32406 -41.61759 -39.68789 -37.44245 -36.91548 -35.39763 -33.31274 -32.57218 -32.39274 -31.33381 -30.45029 -28.31992 -27.98499 -26.36865 -25.50416 -24.90080 -23.77268 -22.86399 -22.03319 -21.74647 -20.82981 -19.75006 -19.19536 -18.40029 -17.45133 -17.42546 -17.04574 -16.64296 -16.45005 -15.91884 -15.75678 -15.48903 -15.34901 -15.21575 -14.97438 -14.76076 -14.38297 -14.09720 -13.96742 -13.86416 -13.59802 -13.47601 -13.23671 -13.18768 -12.98868 -12.80044 -12.71702 -12.55176 -12.54433 -12.27844 -12.24046 -12.18216 -12.03104 -11.95345 -11.87380 -11.34031 -11.30069 -11.24857 -11.14323 -10.96287 -10.71012 -10.41762 -9.67150 -8.95983 -7.89681 -5.18328 0.10222 0.58205 1.03385 1.47573 1.50881 1.56748 1.85972 2.15274 2.58442 3.05375 3.29205 3.42195 3.45014 3.53795 3.70732 3.79061 3.79450 3.90150 3.99901 4.11120 4.20037 4.22804 4.30370 4.36737 4.43909 4.50462 4.53108 4.60336 4.63343 4.65133 4.69266 4.76112 4.82018 4.84661 4.88743 4.91529 4.96071 5.12947 5.16074 5.19622 5.21418 5.23555 5.31639 5.38640 5.46155 5.48304 5.55770 5.59420 5.72856 6.31868 6.40653 6.78898 7.03081 7.37347 8.14448 8.36569 9.33824 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017242 B = 0.002448 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.576610 B =11435.110653 C =12635.157795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.167 4.167 4 N -0.341 5.341 5 C 0.109 3.891 6 C -0.119 4.119 7 C 0.607 3.393 8 O -0.578 6.578 9 N -0.603 5.603 10 C 0.119 3.881 11 C -0.079 4.079 12 H 0.124 0.876 13 C -0.106 4.106 14 C -0.108 4.108 15 C -0.129 4.129 16 C 0.189 3.811 17 H 0.050 0.950 18 N -0.741 5.741 19 C -0.233 4.233 20 H 0.078 0.922 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.971 3.029 24 H -0.300 1.300 25 H -0.278 1.278 26 H -0.277 1.277 27 C -0.087 4.087 28 H 0.063 0.937 29 C 0.126 3.874 30 N -0.213 5.213 31 N -0.085 5.085 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.125 0.875 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.225 0.775 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.091 0.909 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.041 0.959 48 H 0.370 0.630 49 H 0.248 0.752 50 H 0.065 0.935 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.960 -3.367 -26.884 30.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.035 3.965 3 C -0.225 4.225 4 N -0.127 5.127 5 C -0.050 4.050 6 C -0.258 4.258 7 C 0.395 3.605 8 O -0.458 6.458 9 N -0.334 5.334 10 C -0.003 4.003 11 C -0.098 4.098 12 H 0.142 0.858 13 C -0.144 4.144 14 C -0.146 4.146 15 C -0.169 4.169 16 C 0.081 3.919 17 H 0.068 0.932 18 N -0.381 5.381 19 C -0.364 4.364 20 H 0.096 0.904 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.801 3.199 24 H -0.226 1.226 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.107 4.107 28 H 0.082 0.918 29 C 0.004 3.996 30 N -0.087 5.087 31 N -0.064 5.064 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.075 0.925 35 H 0.143 0.857 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.092 0.908 39 H 0.241 0.759 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.202 0.798 49 H 0.057 0.943 50 H 0.083 0.917 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.825 -4.156 -27.335 30.479 hybrid contribution 0.494 1.776 1.754 2.544 sum -12.330 -2.381 -25.581 28.497 Atomic orbital electron populations 1.22267 0.91313 1.03354 1.05099 1.22126 0.96529 0.94204 0.83615 1.22312 1.02187 0.92131 1.05885 1.51083 1.42996 1.08825 1.09767 1.23548 0.95677 1.01399 0.84343 1.21174 1.16633 0.92134 0.95872 1.16796 0.76855 0.82626 0.84252 1.90801 1.56707 1.27722 1.70580 1.48447 1.63108 1.10823 1.11038 1.22508 1.02029 0.79838 0.95938 1.22344 0.98097 0.96195 0.93177 0.85794 1.21536 0.96026 1.00371 0.96436 1.21473 1.01666 0.96802 0.94647 1.22141 0.97982 0.97818 0.98925 1.19791 0.94711 0.89621 0.87758 0.93185 1.42784 1.66273 1.04517 1.24527 1.19599 1.25484 0.92794 0.98571 0.90369 1.25562 1.03769 0.95164 1.02760 1.69841 1.53622 0.98176 1.40800 0.85235 0.78809 0.76033 0.79845 1.22632 1.20401 1.20343 1.21583 0.97899 0.94975 0.96253 0.91844 1.21947 0.98016 0.98878 0.80749 1.74684 1.11552 1.23477 0.98946 1.81878 1.18792 0.93537 1.12233 0.91720 0.86906 0.92548 0.85669 0.91959 0.86640 0.90754 0.75876 0.90763 0.89597 0.93408 0.89080 0.91064 0.90729 0.93780 0.94047 0.79778 0.94280 0.91684 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.52 71.99 0.69 -0.16 16 2 C 0.13 1.00 3.96 44.99 0.18 1.17 16 3 C -0.17 -0.65 8.85 71.98 0.64 -0.01 16 4 N -0.34 -5.66 3.54 -326.55 -1.16 -6.82 16 5 C 0.11 2.15 10.40 83.85 0.87 3.03 16 6 C -0.12 -3.24 6.85 40.81 0.28 -2.96 16 7 C 0.61 20.87 7.85 86.69 0.68 21.55 16 8 O -0.58 -23.67 17.14 -4.00 -0.07 -23.73 16 9 N -0.60 -19.84 3.34 -814.08 -2.72 -22.55 16 10 C 0.12 3.06 4.81 87.06 0.42 3.48 16 11 C -0.08 -1.93 3.61 -9.65 -0.03 -1.96 16 12 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.11 -2.39 4.62 30.46 0.14 -2.25 16 14 C -0.11 -2.67 5.93 30.57 0.18 -2.49 16 15 C -0.13 -4.51 5.33 30.65 0.16 -4.34 16 16 C 0.19 7.40 2.46 44.20 0.11 7.51 16 17 H 0.05 1.96 8.08 -2.39 -0.02 1.94 16 18 N -0.74 -38.12 5.03 -326.73 -1.64 -39.77 16 19 C -0.23 -13.08 9.89 84.03 0.83 -12.25 16 20 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 21 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 22 N -0.97 -61.99 13.06 21.65 0.28 -61.71 16 23 Si 0.97 47.39 29.55 68.60 2.03 49.42 16 24 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 C -0.09 -2.94 2.49 -10.88 -0.03 -2.97 16 28 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 29 C 0.13 4.75 5.08 86.44 0.44 5.19 16 30 N -0.21 -5.63 9.78 -50.00 -0.49 -6.12 16 31 N -0.08 -1.95 13.78 37.02 0.51 -1.44 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 34 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.39 8.14 -2.38 -0.02 0.38 16 37 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 38 H 0.07 0.29 7.23 -2.39 -0.02 0.27 16 39 H 0.22 3.22 7.34 -2.91 -0.02 3.20 16 40 H 0.07 1.88 7.73 -2.39 -0.02 1.86 16 41 H 0.09 2.06 7.23 -2.38 -0.02 2.05 16 42 H 0.05 1.22 7.15 -2.39 -0.02 1.21 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.04 1.56 6.80 -2.38 -0.02 1.55 16 48 H 0.37 20.92 6.44 -92.71 -0.60 20.32 16 49 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 50 H 0.06 2.53 6.15 -2.39 -0.01 2.51 16 51 H 0.05 2.10 7.42 -2.39 -0.02 2.08 16 Total: -1.00 -77.67 399.09 3.10 -74.56 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.34 Total: 29.94 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.02 Total: 8.23 kcal Atomic # 7 Polarization: -133.19 SS G_CDS: -5.21 Total: -138.41 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.07 Total: -23.73 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -77.67 3.10 -74.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992872713.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.257 kcal (2) G-P(sol) polarization free energy of solvation -77.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds