Wall clock time and date at job start Wed Apr 1 2020 05:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47144 * 2 1 4 4 C 1.52997 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.55272 * 29.32925 * 4 3 2 6 6 C 1.53002 * 117.51999 * 243.62862 * 4 3 2 7 7 C 1.52999 * 60.00195 * 252.51827 * 6 4 3 8 8 H 1.08999 * 117.52152 * 107.48090 * 7 6 4 9 9 C 1.50698 * 117.49671 * 252.51149 * 7 6 4 10 10 O 1.21277 * 120.00397 * 68.61700 * 9 7 6 11 11 N 1.34783 * 119.99858 * 248.62181 * 9 7 6 12 12 C 1.46498 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47024 * 179.97438 * 12 11 9 14 14 C 1.35357 * 126.75465 * 95.28785 * 13 12 11 15 15 N 1.35312 * 106.17361 * 180.12536 * 14 13 12 16 16 C 1.46505 * 125.86567 * 179.90050 * 15 14 13 17 17 H 1.09000 * 110.77732 * 156.50424 * 16 15 14 18 18 C 1.55153 * 110.72295 * 279.74454 * 16 15 14 19 19 C 1.55131 * 101.48647 * 82.69337 * 18 16 15 20 20 N 1.47426 * 104.71847 * 37.29562 * 19 18 16 21 21 C 1.36945 * 125.64675 * 155.81671 * 20 19 18 22 22 H 1.07997 * 119.99756 * 179.68946 * 21 20 19 23 23 C 1.38805 * 119.99878 * 359.68852 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.47026 * 108.70569 * 335.55014 * 20 19 18 30 30 N 1.28716 * 108.26428 * 359.64721 * 15 14 13 31 31 N 1.28628 * 110.17966 * 0.22026 * 30 15 14 32 32 H 1.09008 * 109.47137 * 60.00207 * 1 2 3 33 33 H 1.08994 * 109.47132 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47540 * 300.00171 * 1 2 3 35 35 H 1.09000 * 109.47107 * 240.00078 * 2 1 3 36 36 H 1.09001 * 109.46758 * 119.99643 * 2 1 3 37 37 H 1.09000 * 109.47055 * 60.00046 * 3 2 1 38 38 H 1.09001 * 109.47001 * 299.99494 * 3 2 1 39 39 H 1.08993 * 117.50265 * 145.02635 * 6 4 3 40 40 H 1.09010 * 117.49553 * 0.02562 * 6 4 3 41 41 H 0.97001 * 120.00091 * 359.97438 * 11 9 7 42 42 H 1.08990 * 109.47697 * 59.99404 * 12 11 9 43 43 H 1.08998 * 109.46727 * 299.99054 * 12 11 9 44 44 H 1.07996 * 126.91100 * 0.02562 * 14 13 12 45 45 H 1.08999 * 111.00098 * 200.93711 * 18 16 15 46 46 H 1.08999 * 111.00620 * 324.74889 * 18 16 15 47 47 H 1.08994 * 110.50226 * 278.45550 * 19 18 16 48 48 H 1.09001 * 110.34274 * 156.05220 * 19 18 16 49 49 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 50 50 H 1.09003 * 109.87851 * 120.70448 * 29 20 19 51 51 H 1.08997 * 109.87950 * 241.87026 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2764 2.0454 1.2165 7 6 4.2765 2.7944 -0.1175 8 1 3.6513 3.6839 -0.1958 9 6 5.5694 2.8386 -0.8906 10 8 6.0119 1.8262 -1.3906 11 7 6.2339 4.0034 -1.0262 12 6 7.4905 4.0464 -1.7781 13 6 8.0264 5.4549 -1.7806 14 6 8.9422 5.9745 -0.9300 15 7 9.1152 7.2634 -1.3039 16 6 10.0159 8.2281 -0.6679 17 1 10.2842 9.0233 -1.3634 18 6 9.3728 8.8157 0.6161 19 6 9.7009 7.7140 1.6578 20 7 11.0509 7.2457 1.2951 21 6 11.9424 6.6458 2.1441 22 1 12.9093 6.3329 1.7787 23 6 11.6033 6.4400 3.4743 24 7 10.4247 6.8209 3.9195 25 14 12.8191 5.6211 4.6322 26 1 12.2205 5.5193 5.9873 27 1 13.1424 4.2616 4.1298 28 1 14.0612 6.4321 4.7000 29 6 11.2792 7.5234 -0.1305 30 7 8.3566 7.4946 -2.3177 31 7 7.6943 6.4362 -2.6269 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.6767 1.9563 -0.8900 39 1 5.2114 1.5846 1.5351 40 1 3.6510 2.4418 2.0166 41 1 5.8799 4.8132 -0.6265 42 1 7.3114 3.7244 -2.8039 43 1 8.2168 3.3818 -1.3103 44 1 9.4344 5.4637 -0.1157 45 1 9.8367 9.7643 0.8863 46 1 8.2955 8.9301 0.4963 47 1 8.9840 6.8961 1.5871 48 1 9.7023 8.1325 2.6643 49 1 10.1876 6.6767 4.8490 50 1 12.1452 8.1751 -0.2471 51 1 11.4402 6.5895 -0.6689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000022389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:36 Heat of formation + Delta-G solvation = 100.108754 kcal Electronic energy + Delta-G solvation = -30099.182663 eV Core-core repulsion = 26036.969676 eV Total energy + Delta-G solvation = -4062.212988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.10320 -40.03182 -38.00538 -37.43542 -35.13928 -34.09664 -33.76344 -31.92982 -31.16233 -29.55733 -28.07198 -27.86071 -26.83336 -24.92272 -23.69658 -22.79873 -22.19763 -21.37512 -20.78901 -20.36311 -20.14571 -19.98480 -17.63449 -17.30994 -16.77351 -16.31811 -15.62219 -15.49696 -15.31852 -14.99084 -14.82061 -14.39341 -14.30379 -14.07781 -13.86318 -13.55706 -13.27786 -12.99840 -12.92688 -12.65489 -12.45465 -12.38903 -12.25414 -11.99050 -11.57585 -11.53645 -11.39688 -11.29357 -11.21176 -11.09703 -11.04173 -10.72398 -10.65476 -10.43857 -10.37809 -10.22757 -10.21613 -9.97768 -9.85776 -9.64938 -9.08177 -9.02541 -8.86800 -7.14845 -5.88690 -3.33380 1.83495 2.43416 2.48091 2.59693 3.28271 3.33475 3.34137 3.34261 3.68857 4.28138 4.36992 4.38223 4.56489 4.62561 4.71043 4.81167 4.87777 4.87854 4.97255 5.03741 5.04935 5.11950 5.25494 5.26704 5.34211 5.35909 5.44262 5.51075 5.55059 5.58151 5.62937 5.72271 5.77275 5.80261 5.86814 5.92862 5.95029 5.98727 6.14866 6.15897 6.16060 6.17109 6.22062 6.30260 6.37658 6.93002 7.14146 7.36487 7.49249 7.58010 8.07914 8.20778 8.71930 8.95967 9.56045 10.15849 11.15001 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009711 B = 0.002408 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.695751 B =11625.376889 C =13580.164146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.091 4.091 4 C -0.118 4.118 5 H 0.118 0.882 6 C -0.147 4.147 7 C -0.190 4.190 8 H 0.123 0.877 9 C 0.545 3.455 10 O -0.544 6.544 11 N -0.718 5.718 12 C 0.216 3.784 13 C -0.067 4.067 14 C 0.007 3.993 15 N -0.269 5.269 16 C 0.122 3.878 17 H 0.116 0.884 18 C -0.152 4.152 19 C 0.147 3.853 20 N -0.601 5.601 21 C -0.232 4.232 22 H 0.080 0.920 23 C -0.004 4.004 24 N -0.920 5.920 25 Si 0.918 3.082 26 H -0.289 1.289 27 H -0.284 1.284 28 H -0.283 1.283 29 C 0.128 3.872 30 N -0.094 5.094 31 N -0.263 5.263 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.404 0.596 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.195 0.805 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.017 0.983 48 H 0.116 0.884 49 H 0.256 0.744 50 H 0.052 0.948 51 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.575 -5.068 -6.233 15.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.128 4.128 4 C -0.137 4.137 5 H 0.136 0.864 6 C -0.184 4.184 7 C -0.212 4.212 8 H 0.141 0.859 9 C 0.332 3.668 10 O -0.422 6.422 11 N -0.369 5.369 12 C 0.091 3.909 13 C -0.206 4.206 14 C -0.146 4.146 15 N -0.061 5.061 16 C 0.020 3.980 17 H 0.134 0.866 18 C -0.192 4.192 19 C 0.022 3.978 20 N -0.328 5.328 21 C -0.360 4.360 22 H 0.098 0.902 23 C -0.200 4.200 24 N -0.567 5.567 25 Si 0.748 3.252 26 H -0.214 1.214 27 H -0.210 1.210 28 H -0.210 1.210 29 C 0.001 3.999 30 N -0.073 5.073 31 N -0.130 5.130 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.238 0.762 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.212 0.788 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.035 0.965 48 H 0.133 0.867 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.656 -4.764 -7.408 16.250 hybrid contribution 1.011 -0.461 1.592 1.941 sum -12.645 -5.224 -5.815 14.866 Atomic orbital electron populations 1.21783 0.95920 1.01603 1.01770 1.21501 0.95601 0.96526 1.02373 1.21248 0.91971 0.97355 1.02217 1.22450 0.94602 0.95348 1.01253 0.86419 1.23123 1.03223 1.01847 0.90248 1.22279 0.97660 0.98914 1.02308 0.85949 1.19620 0.84610 0.82898 0.79703 1.90688 1.68722 1.33948 1.48842 1.45956 1.24326 1.11167 1.55455 1.19262 0.85135 0.88970 0.97518 1.21704 1.02835 0.97822 0.98196 1.23635 1.02083 0.85948 1.02979 1.47490 1.28404 1.09662 1.20498 1.22917 0.89553 0.89839 0.95684 0.86627 1.23539 0.99967 1.01492 0.94203 1.22137 0.85004 0.91927 0.98728 1.44518 1.14486 1.70821 1.02974 1.18993 0.95593 1.31732 0.89687 0.90217 1.24799 0.97164 1.00976 0.97085 1.69732 1.19923 1.51706 1.15357 0.86111 0.79948 0.79212 0.79977 1.21442 1.20995 1.20989 1.21654 0.92697 0.97510 0.88053 1.78230 1.05277 1.20431 1.03367 1.74985 1.19313 0.96390 1.22352 0.92767 0.92780 0.92776 0.91795 0.91771 0.91600 0.91410 0.88103 0.87758 0.76196 0.89852 0.89652 0.78790 0.89283 0.91302 0.96513 0.86653 0.93347 0.93062 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.86 5.89 -26.73 -0.16 -1.02 16 3 C -0.09 -0.68 5.50 -26.73 -0.15 -0.83 16 4 C -0.12 -1.12 5.25 -90.62 -0.48 -1.60 16 5 H 0.12 1.31 7.60 -51.93 -0.39 0.92 16 6 C -0.15 -1.39 9.88 -26.73 -0.26 -1.65 16 7 C -0.19 -1.96 5.91 -91.77 -0.54 -2.51 16 8 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 9 C 0.55 7.33 7.61 -10.98 -0.08 7.25 16 10 O -0.54 -9.11 16.26 5.56 0.09 -9.02 16 11 N -0.72 -9.19 5.55 -61.48 -0.34 -9.53 16 12 C 0.22 2.98 6.23 -5.20 -0.03 2.95 16 13 C -0.07 -1.04 6.62 -82.77 -0.55 -1.59 16 14 C 0.01 0.11 9.14 -17.04 -0.16 -0.04 16 15 N -0.27 -4.41 3.34 -52.98 -0.18 -4.59 16 16 C 0.12 1.89 4.10 -66.10 -0.27 1.62 16 17 H 0.12 1.53 8.14 -51.93 -0.42 1.10 16 18 C -0.15 -2.50 6.78 -24.46 -0.17 -2.66 16 19 C 0.15 3.09 5.39 -2.41 -0.01 3.08 16 20 N -0.60 -13.27 3.39 -169.93 -0.58 -13.84 16 21 C -0.23 -5.80 10.27 -15.06 -0.15 -5.95 16 22 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 23 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 24 N -0.92 -24.48 10.08 55.49 0.56 -23.92 16 25 Si 0.92 20.58 29.55 -169.99 -5.02 15.55 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 C 0.13 2.27 6.32 -3.06 -0.02 2.25 16 30 N -0.09 -1.63 13.16 60.35 0.79 -0.84 16 31 N -0.26 -4.51 12.41 33.29 0.41 -4.10 16 32 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.45 7.88 -51.93 -0.41 0.04 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 0.81 8.03 -51.92 -0.42 0.39 16 41 H 0.40 4.71 8.46 -40.82 -0.35 4.36 16 42 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.20 3.37 7.57 -52.49 -0.40 2.97 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.02 0.38 7.14 -51.93 -0.37 0.01 16 48 H 0.12 2.81 5.86 -51.93 -0.30 2.51 16 49 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 50 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 51 H 0.04 0.63 7.40 -51.93 -0.38 0.25 16 LS Contribution 415.43 15.07 6.26 6.26 Total: -1.00 -29.22 415.43 -9.25 -38.47 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.49 Total: 7.03 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -2.76 Total: -1.47 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.67 Total: -56.82 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -29.22 -9.25 -38.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000022389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.576 kcal (2) G-P(sol) polarization free energy of solvation -29.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds