Wall clock time and date at job start Wed Apr 1 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47144 * 2 1 4 4 C 1.52997 * 109.47144 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.55272 * 29.32925 * 4 3 2 6 6 C 1.53002 * 117.51999 * 243.62862 * 4 3 2 7 7 C 1.52999 * 60.00195 * 252.51827 * 6 4 3 8 8 H 1.08999 * 117.52152 * 107.48090 * 7 6 4 9 9 C 1.50698 * 117.49671 * 252.51149 * 7 6 4 10 10 O 1.21277 * 120.00397 * 68.61700 * 9 7 6 11 11 N 1.34783 * 119.99858 * 248.62181 * 9 7 6 12 12 C 1.46498 * 119.99833 * 180.02562 * 11 9 7 13 13 C 1.50700 * 109.47024 * 179.97438 * 12 11 9 14 14 C 1.35357 * 126.75465 * 95.28785 * 13 12 11 15 15 N 1.35312 * 106.17361 * 180.12536 * 14 13 12 16 16 C 1.46505 * 125.86567 * 179.90050 * 15 14 13 17 17 H 1.09000 * 110.77732 * 156.50424 * 16 15 14 18 18 C 1.55153 * 110.72295 * 279.74454 * 16 15 14 19 19 C 1.55131 * 101.48647 * 82.69337 * 18 16 15 20 20 N 1.47426 * 104.71847 * 37.29562 * 19 18 16 21 21 C 1.36945 * 125.64675 * 155.81671 * 20 19 18 22 22 H 1.07997 * 119.99756 * 179.68946 * 21 20 19 23 23 C 1.38805 * 119.99878 * 359.68852 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 C 1.47026 * 108.70569 * 335.55014 * 20 19 18 30 30 N 1.28716 * 108.26428 * 359.64721 * 15 14 13 31 31 N 1.28628 * 110.17966 * 0.22026 * 30 15 14 32 32 H 1.09008 * 109.47137 * 60.00207 * 1 2 3 33 33 H 1.08994 * 109.47132 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47540 * 300.00171 * 1 2 3 35 35 H 1.09000 * 109.47107 * 240.00078 * 2 1 3 36 36 H 1.09001 * 109.46758 * 119.99643 * 2 1 3 37 37 H 1.09000 * 109.47055 * 60.00046 * 3 2 1 38 38 H 1.09001 * 109.47001 * 299.99494 * 3 2 1 39 39 H 1.08993 * 117.50265 * 145.02635 * 6 4 3 40 40 H 1.09010 * 117.49553 * 0.02562 * 6 4 3 41 41 H 0.97001 * 120.00091 * 359.97438 * 11 9 7 42 42 H 1.08990 * 109.47697 * 59.99404 * 12 11 9 43 43 H 1.08998 * 109.46727 * 299.99054 * 12 11 9 44 44 H 1.07996 * 126.91100 * 0.02562 * 14 13 12 45 45 H 1.08999 * 111.00098 * 200.93711 * 18 16 15 46 46 H 1.08999 * 111.00620 * 324.74889 * 18 16 15 47 47 H 1.08994 * 110.50226 * 278.45550 * 19 18 16 48 48 H 1.09001 * 110.34274 * 156.05220 * 19 18 16 49 49 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 50 50 H 1.09003 * 109.87851 * 120.70448 * 29 20 19 51 51 H 1.08997 * 109.87950 * 241.87026 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 4.0403 0.5851 -0.4807 6 6 4.2764 2.0454 1.2165 7 6 4.2765 2.7944 -0.1175 8 1 3.6513 3.6839 -0.1958 9 6 5.5694 2.8386 -0.8906 10 8 6.0119 1.8262 -1.3906 11 7 6.2339 4.0034 -1.0262 12 6 7.4905 4.0464 -1.7781 13 6 8.0264 5.4549 -1.7806 14 6 8.9422 5.9745 -0.9300 15 7 9.1152 7.2634 -1.3039 16 6 10.0159 8.2281 -0.6679 17 1 10.2842 9.0233 -1.3634 18 6 9.3728 8.8157 0.6161 19 6 9.7009 7.7140 1.6578 20 7 11.0509 7.2457 1.2951 21 6 11.9424 6.6458 2.1441 22 1 12.9093 6.3329 1.7787 23 6 11.6033 6.4400 3.4743 24 7 10.4247 6.8209 3.9195 25 14 12.8191 5.6211 4.6322 26 1 12.2205 5.5193 5.9873 27 1 13.1424 4.2616 4.1298 28 1 14.0612 6.4321 4.7000 29 6 11.2792 7.5234 -0.1305 30 7 8.3566 7.4946 -2.3177 31 7 7.6943 6.4362 -2.6269 32 1 -0.3634 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 1.6766 1.9563 0.8900 38 1 1.6767 1.9563 -0.8900 39 1 5.2114 1.5846 1.5351 40 1 3.6510 2.4418 2.0166 41 1 5.8799 4.8132 -0.6265 42 1 7.3114 3.7244 -2.8039 43 1 8.2168 3.3818 -1.3103 44 1 9.4344 5.4637 -0.1157 45 1 9.8367 9.7643 0.8863 46 1 8.2955 8.9301 0.4963 47 1 8.9840 6.8961 1.5871 48 1 9.7023 8.1325 2.6643 49 1 10.1876 6.6767 4.8490 50 1 12.1452 8.1751 -0.2471 51 1 11.4402 6.5895 -0.6689 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000022389.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:35 Heat of formation + Delta-G solvation = 83.402867 kcal Electronic energy + Delta-G solvation = -30099.907085 eV Core-core repulsion = 26036.969676 eV Total energy + Delta-G solvation = -4062.937409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.42206 -41.06239 -39.48566 -38.29058 -36.34755 -35.32107 -34.72523 -33.53050 -32.44649 -31.17284 -29.43314 -28.80444 -27.82355 -26.65070 -24.67088 -24.19995 -22.85234 -22.67587 -21.93768 -21.53563 -21.43990 -21.02158 -19.08992 -18.67066 -18.04206 -17.55815 -16.88321 -16.71994 -16.42130 -16.14848 -15.88263 -15.76650 -15.52801 -15.26940 -15.18785 -14.63115 -14.31942 -14.20503 -13.94373 -13.84186 -13.71460 -13.61773 -13.12518 -13.07342 -12.92672 -12.81864 -12.77445 -12.71348 -12.21839 -12.19477 -12.10774 -12.08518 -11.93526 -11.89879 -11.66665 -11.62062 -11.25863 -11.09988 -11.01439 -10.85520 -10.74822 -10.30207 -10.19789 -8.96195 -7.80692 -5.25458 0.51111 1.17506 1.30421 1.44379 1.49604 1.50223 1.56260 2.28504 2.47117 2.85960 3.11387 3.31842 3.38844 3.53141 3.60408 3.65477 3.74050 3.76872 3.85816 3.95881 4.02318 4.16223 4.21932 4.30687 4.31679 4.38279 4.47488 4.50517 4.59038 4.65682 4.73979 4.81006 4.84975 4.86307 4.88553 4.89268 4.95483 4.99682 5.00156 5.07403 5.21687 5.28063 5.37766 5.42301 5.43548 5.52205 5.53281 5.62220 5.74796 6.26123 6.44663 7.06558 7.14398 7.39274 7.71723 8.31730 9.20399 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009711 B = 0.002408 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.695751 B =11625.376889 C =13580.164146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.115 4.115 5 H 0.097 0.903 6 C -0.142 4.142 7 C -0.195 4.195 8 H 0.146 0.854 9 C 0.541 3.459 10 O -0.583 6.583 11 N -0.712 5.712 12 C 0.219 3.781 13 C -0.052 4.052 14 C -0.001 4.001 15 N -0.266 5.266 16 C 0.131 3.869 17 H 0.152 0.848 18 C -0.136 4.136 19 C 0.152 3.848 20 N -0.617 5.617 21 C -0.236 4.236 22 H 0.083 0.917 23 C -0.057 4.057 24 N -0.943 5.943 25 Si 0.973 3.027 26 H -0.297 1.297 27 H -0.282 1.282 28 H -0.277 1.277 29 C 0.127 3.873 30 N -0.098 5.098 31 N -0.276 5.276 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.411 0.589 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.183 0.817 45 H 0.107 0.893 46 H 0.078 0.922 47 H -0.006 1.006 48 H 0.081 0.919 49 H 0.248 0.752 50 H 0.070 0.930 51 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.188 -4.151 -6.818 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.122 4.122 4 C -0.134 4.134 5 H 0.115 0.885 6 C -0.179 4.179 7 C -0.216 4.216 8 H 0.164 0.836 9 C 0.330 3.670 10 O -0.463 6.463 11 N -0.363 5.363 12 C 0.094 3.906 13 C -0.191 4.191 14 C -0.154 4.154 15 N -0.059 5.059 16 C 0.030 3.970 17 H 0.169 0.831 18 C -0.175 4.175 19 C 0.027 3.973 20 N -0.344 5.344 21 C -0.365 4.365 22 H 0.101 0.899 23 C -0.250 4.250 24 N -0.592 5.592 25 Si 0.802 3.198 26 H -0.223 1.223 27 H -0.208 1.208 28 H -0.203 1.203 29 C 0.001 3.999 30 N -0.077 5.077 31 N -0.143 5.143 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.246 0.754 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.200 0.800 45 H 0.125 0.875 46 H 0.097 0.903 47 H 0.012 0.988 48 H 0.099 0.901 49 H 0.057 0.943 50 H 0.088 0.912 51 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -14.264 -3.817 -8.021 16.804 hybrid contribution 1.236 -0.777 1.722 2.258 sum -13.028 -4.594 -6.298 15.182 Atomic orbital electron populations 1.21769 0.95013 1.01998 1.02123 1.21500 0.96368 0.96212 1.02002 1.21239 0.90175 0.97787 1.02984 1.22450 0.95860 0.94118 1.00942 0.88526 1.23195 1.02943 1.01263 0.90498 1.22343 0.96413 1.00329 1.02496 0.83586 1.20187 0.85350 0.82239 0.79266 1.90668 1.69913 1.35180 1.50552 1.45913 1.23859 1.11488 1.55058 1.19210 0.85647 0.88045 0.97724 1.21790 1.02012 0.97978 0.97274 1.23514 1.02585 0.86305 1.03039 1.47559 1.28349 1.09651 1.20298 1.22964 0.88143 0.89947 0.95975 0.83051 1.23368 1.00845 1.00424 0.92862 1.21852 0.84378 0.92464 0.98616 1.44677 1.14370 1.70660 1.04697 1.19311 0.96109 1.30876 0.90201 0.89875 1.25481 0.98603 1.02335 0.98576 1.69968 1.21261 1.53091 1.14919 0.85238 0.78328 0.78410 0.77849 1.22316 1.20826 1.20347 1.21770 0.94496 0.97993 0.85641 1.78201 1.05470 1.20527 1.03507 1.74981 1.19770 0.96724 1.22861 0.92602 0.92428 0.92209 0.92563 0.91855 0.90235 0.91131 0.89602 0.85425 0.75361 0.89864 0.89742 0.80017 0.87478 0.90336 0.98776 0.90071 0.94258 0.91247 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 71.98 0.71 -0.92 16 2 C -0.12 -1.61 5.89 30.59 0.18 -1.43 16 3 C -0.08 -1.14 5.50 30.59 0.17 -0.97 16 4 C -0.11 -2.12 5.25 -10.79 -0.06 -2.18 16 5 H 0.10 2.22 7.60 -2.39 -0.02 2.20 16 6 C -0.14 -2.53 9.88 30.59 0.30 -2.23 16 7 C -0.19 -3.82 5.91 -11.54 -0.07 -3.89 16 8 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 9 C 0.54 14.53 7.61 87.66 0.67 15.20 16 10 O -0.58 -19.94 16.26 -3.02 -0.05 -19.99 16 11 N -0.71 -17.98 5.55 -466.81 -2.59 -20.57 16 12 C 0.22 6.01 6.23 85.63 0.53 6.55 16 13 C -0.05 -1.57 6.62 41.60 0.28 -1.30 16 14 C 0.00 -0.03 9.14 83.49 0.76 0.73 16 15 N -0.27 -8.25 3.34 -321.54 -1.07 -9.33 16 16 C 0.13 3.71 4.10 46.18 0.19 3.90 16 17 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 18 C -0.14 -4.16 6.78 32.06 0.22 -3.95 16 19 C 0.15 6.40 5.39 86.93 0.47 6.87 16 20 N -0.62 -26.96 3.39 -691.55 -2.35 -29.31 16 21 C -0.24 -11.76 10.27 84.03 0.86 -10.90 16 22 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 23 C -0.06 -2.93 5.49 84.86 0.47 -2.46 16 24 N -0.94 -51.35 10.08 21.65 0.22 -51.13 16 25 Si 0.97 42.59 29.55 68.60 2.03 44.61 16 26 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 27 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 29 C 0.13 4.27 6.32 86.73 0.55 4.82 16 30 N -0.10 -3.20 13.16 37.02 0.49 -2.72 16 31 N -0.28 -9.09 12.41 -48.59 -0.60 -9.70 16 32 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 0.88 7.88 -2.39 -0.02 0.86 16 38 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.13 1.69 8.03 -2.38 -0.02 1.67 16 41 H 0.41 9.23 8.46 -92.71 -0.78 8.45 16 42 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.18 6.39 7.57 -2.91 -0.02 6.37 16 45 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 47 H -0.01 -0.26 7.14 -2.39 -0.02 -0.28 16 48 H 0.08 4.04 5.86 -2.39 -0.01 4.02 16 49 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 50 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 51 H 0.03 1.15 7.40 -2.39 -0.02 1.14 16 Total: -1.00 -63.43 415.43 2.44 -60.98 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.14 Total: 29.30 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 6.23 Total: 7.85 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.91 Total: -122.75 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -63.43 2.44 -60.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000022389.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.386 kcal (2) G-P(sol) polarization free energy of solvation -63.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds