Wall clock time and date at job start Wed Apr 1 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47287 * 2 1 4 4 N 1.46499 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.34816 * 126.59382 * 125.00285 * 4 3 2 6 6 C 1.36591 * 106.83669 * 179.97438 * 5 4 3 7 7 C 1.47530 * 125.77239 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99433 * 6.57057 * 7 6 5 9 9 N 1.34771 * 120.00397 * 186.56885 * 7 6 5 10 10 C 1.46955 * 120.84697 * 7.14556 * 9 7 6 11 11 C 1.53138 * 109.01954 * 125.94895 * 10 9 7 12 12 C 1.53120 * 109.48246 * 54.07193 * 11 10 9 13 13 C 1.52854 * 109.34970 * 299.35858 * 12 11 10 14 14 H 1.09002 * 109.24947 * 302.48102 * 13 12 11 15 15 C 1.52768 * 110.20421 * 182.43393 * 13 12 11 16 16 N 1.44104 * 110.28847 * 293.50768 * 15 13 12 17 17 C 1.36941 * 121.34936 * 126.17739 * 16 15 13 18 18 H 1.08003 * 119.99588 * 340.64619 * 17 16 15 19 19 C 1.38811 * 120.00162 * 160.63637 * 17 16 15 20 20 N 1.31623 * 120.00008 * 160.08179 * 19 17 16 21 21 Si 1.86801 * 120.00146 * 340.08612 * 19 17 16 22 22 H 1.48497 * 109.47297 * 95.62496 * 21 19 17 23 23 H 1.48496 * 109.47033 * 215.62821 * 21 19 17 24 24 H 1.48503 * 109.46945 * 335.62591 * 21 19 17 25 25 C 1.46974 * 117.88331 * 305.99470 * 16 15 13 26 26 C 1.53091 * 108.61861 * 54.49140 * 25 16 15 27 27 C 1.47301 * 120.84790 * 186.86877 * 9 7 6 28 28 H 1.09000 * 110.07774 * 355.11951 * 27 9 7 29 29 N 1.34401 * 108.46064 * 359.97438 * 6 5 4 30 30 N 1.28763 * 109.52488 * 359.73464 * 29 6 5 31 31 H 1.09000 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47159 * 300.00381 * 1 2 3 33 33 H 1.09008 * 109.47367 * 59.99492 * 1 2 3 34 34 H 1.08997 * 109.47417 * 119.99997 * 2 1 3 35 35 H 1.08996 * 109.47075 * 240.00378 * 2 1 3 36 36 H 1.09007 * 109.46872 * 300.00262 * 3 2 1 37 37 H 1.08992 * 109.47002 * 59.99754 * 3 2 1 38 38 H 1.07999 * 126.58304 * 359.96858 * 5 4 3 39 39 H 1.08999 * 109.54492 * 245.81539 * 10 9 7 40 40 H 1.08998 * 109.54208 * 6.08800 * 10 9 7 41 41 H 1.09004 * 109.46910 * 174.07340 * 11 10 9 42 42 H 1.08999 * 109.46991 * 294.07203 * 11 10 9 43 43 H 1.08998 * 109.49056 * 59.32134 * 12 11 10 44 44 H 1.09004 * 109.48850 * 179.36689 * 12 11 10 45 45 H 1.08994 * 109.52260 * 52.56876 * 15 13 12 46 46 H 1.09001 * 109.51552 * 172.73373 * 15 13 12 47 47 H 0.97002 * 119.99734 * 179.97438 * 20 19 17 48 48 H 1.09007 * 109.60449 * 294.75533 * 25 16 15 49 49 H 1.08996 * 109.61169 * 174.24206 * 25 16 15 50 50 H 1.09009 * 109.45056 * 184.62439 * 26 25 16 51 51 H 1.08998 * 109.43706 * 64.68374 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3083 2.0635 -0.8875 6 6 5.5940 1.7990 -0.5095 7 6 6.8100 2.2778 -1.1941 8 8 6.7186 3.0681 -2.1137 9 7 8.0220 1.8393 -0.8003 10 6 8.1480 0.7705 0.2004 11 6 9.0253 -0.3472 -0.3709 12 6 10.3582 0.2404 -0.8427 13 6 10.0964 1.2758 -1.9363 14 1 9.5523 0.8044 -2.7547 15 6 11.4179 1.8315 -2.4640 16 7 12.0856 2.5918 -1.4380 17 6 13.3782 2.3198 -1.0769 18 1 13.8148 1.3609 -1.3144 19 6 14.1274 3.2765 -0.4059 20 7 15.1922 2.9170 0.2792 21 14 13.6245 5.0742 -0.4752 22 1 12.8085 5.4063 0.7202 23 1 14.8395 5.9276 -0.4979 24 1 12.8255 5.3177 -1.7030 25 6 11.3362 3.6769 -0.7891 26 6 10.0268 3.1055 -0.2387 27 6 9.2540 2.4149 -1.3664 28 1 9.0070 3.1259 -2.1548 29 7 5.5640 1.0289 0.5915 30 7 4.3412 0.8024 0.9252 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.9954 2.6562 -1.7343 39 1 8.6084 1.1697 1.1042 40 1 7.1606 0.3743 0.4370 41 1 9.2105 -1.0941 0.4011 42 1 8.5156 -0.8142 -1.2136 43 1 10.8627 0.7181 -0.0029 44 1 10.9871 -0.5568 -1.2391 45 1 12.0686 1.0075 -2.7567 46 1 11.2261 2.4692 -3.3270 47 1 15.7160 3.5856 0.7478 48 1 11.1171 4.4571 -1.5182 49 1 11.9266 4.0916 0.0279 50 1 9.4227 3.9140 0.1732 51 1 10.2483 2.3820 0.5458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021702007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:10 Heat of formation + Delta-G solvation = 101.329438 kcal Electronic energy + Delta-G solvation = -31817.870350 eV Core-core repulsion = 27755.710296 eV Total energy + Delta-G solvation = -4062.160055 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.50776 -40.27042 -38.18151 -36.48500 -35.83225 -33.26123 -32.70444 -32.31591 -31.22123 -30.30060 -30.08007 -27.59031 -25.70473 -25.27668 -23.45919 -23.14460 -22.64548 -22.12046 -21.90204 -21.28968 -19.77063 -18.01282 -17.59129 -16.83538 -16.58061 -16.54397 -15.98569 -15.64121 -15.29052 -14.95173 -14.75722 -14.62494 -14.18114 -13.99546 -13.85990 -13.69427 -13.29110 -13.04930 -12.98656 -12.82452 -12.69139 -12.40311 -12.29747 -12.13872 -12.07116 -11.95650 -11.68927 -11.58059 -11.42661 -10.99146 -10.69974 -10.69336 -10.42709 -10.35173 -10.17192 -9.94497 -9.92013 -9.77370 -9.52864 -9.46719 -9.25195 -8.65261 -8.28231 -7.02269 -5.88690 -3.21383 0.87744 1.54660 1.69047 3.05891 3.26792 3.35014 3.52739 3.54128 3.80562 3.97905 4.11668 4.36803 4.48262 4.55675 4.60243 4.70951 4.73495 4.93633 4.98234 5.05889 5.09397 5.25368 5.29190 5.30161 5.35044 5.37388 5.44891 5.48544 5.55364 5.56731 5.76739 5.81238 5.90921 6.03705 6.12909 6.15059 6.18956 6.25971 6.28518 6.39649 6.43761 6.45012 6.56509 6.68868 6.73729 6.82318 6.88556 7.05390 7.55337 7.73701 7.94992 8.23202 8.36333 8.97743 9.76825 10.12434 11.26730 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.002474 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.919960 B =11315.207184 C =11644.725191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.361 5.361 5 C 0.090 3.910 6 C -0.092 4.092 7 C 0.600 3.400 8 O -0.547 6.547 9 N -0.587 5.587 10 C 0.084 3.916 11 C -0.131 4.131 12 C -0.109 4.109 13 C -0.111 4.111 14 H 0.064 0.936 15 C 0.161 3.839 16 N -0.599 5.599 17 C -0.253 4.253 18 H 0.091 0.909 19 C 0.016 3.984 20 N -0.911 5.911 21 Si 0.887 3.113 22 H -0.292 1.292 23 H -0.307 1.307 24 H -0.268 1.268 25 C 0.123 3.877 26 C -0.143 4.143 27 C 0.155 3.845 28 H 0.097 0.903 29 N -0.202 5.202 30 N -0.067 5.067 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.204 0.796 39 H 0.068 0.932 40 H 0.122 0.878 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.021 0.979 47 H 0.261 0.739 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.054 0.946 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.864 -5.595 -1.218 30.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.146 5.146 5 C -0.067 4.067 6 C -0.231 4.231 7 C 0.385 3.615 8 O -0.425 6.425 9 N -0.317 5.317 10 C -0.040 4.040 11 C -0.170 4.170 12 C -0.146 4.146 13 C -0.132 4.132 14 H 0.082 0.918 15 C 0.033 3.967 16 N -0.321 5.321 17 C -0.381 4.381 18 H 0.109 0.891 19 C -0.182 4.182 20 N -0.555 5.555 21 Si 0.720 3.280 22 H -0.221 1.221 23 H -0.237 1.237 24 H -0.194 1.194 25 C -0.003 4.003 26 C -0.183 4.183 27 C 0.053 3.947 28 H 0.115 0.885 29 N -0.075 5.075 30 N -0.047 5.047 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.221 0.779 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.039 0.961 47 H 0.071 0.929 48 H 0.051 0.949 49 H 0.090 0.910 50 H 0.073 0.927 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -29.741 -6.019 -0.364 30.346 hybrid contribution -0.386 1.663 -0.694 1.843 sum -30.127 -4.356 -1.058 30.459 Atomic orbital electron populations 1.21706 0.93817 1.02923 1.02356 1.21834 0.96980 0.94528 1.04291 1.22168 0.72556 1.00129 1.05184 1.50540 1.08774 1.35394 1.19885 1.23369 0.90107 0.97086 0.96089 1.21578 0.94691 1.07800 0.98987 1.16819 0.81616 0.80865 0.82180 1.90784 1.86189 1.36143 1.29344 1.48277 1.05032 1.36924 1.41481 1.22475 1.03563 0.87407 0.90510 1.21931 0.96887 0.97470 1.00686 1.21500 0.95708 0.97818 0.99619 1.21806 0.97891 0.95622 0.97876 0.91807 1.20267 0.91247 0.95019 0.90201 1.43696 1.11345 1.36572 1.40460 1.18943 0.86454 0.99575 1.33120 0.89135 1.25084 0.96306 0.97872 0.98936 1.69821 1.19391 1.33367 1.32932 0.86965 0.75906 0.87076 0.78071 1.22131 1.23657 1.19352 1.21422 0.91208 0.91286 0.96386 1.22418 0.97457 1.00068 0.98342 1.21298 0.81846 0.95387 0.96188 0.88526 1.74457 1.11982 1.10476 1.10618 1.81988 0.93670 1.17592 1.11446 0.91590 0.92067 0.92212 0.89969 0.90998 0.87698 0.88311 0.77940 0.91405 0.86089 0.91090 0.92490 0.90016 0.92102 0.91677 0.96096 0.92875 0.94943 0.91015 0.92687 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.36 9.91 37.16 0.37 0.01 16 2 C -0.14 -0.55 6.14 -26.73 -0.16 -0.72 16 3 C 0.12 0.48 6.54 -4.04 -0.03 0.46 16 4 N -0.36 -3.01 3.69 -61.06 -0.23 -3.24 16 5 C 0.09 0.85 11.28 -16.84 -0.19 0.66 16 6 C -0.09 -1.19 6.71 -83.55 -0.56 -1.75 16 7 C 0.60 9.42 7.69 -12.47 -0.10 9.32 16 8 O -0.55 -9.76 16.34 5.28 0.09 -9.67 16 9 N -0.59 -9.27 2.66 -166.36 -0.44 -9.72 16 10 C 0.08 1.19 5.62 -3.72 -0.02 1.17 16 11 C -0.13 -1.81 6.08 -26.60 -0.16 -1.97 16 12 C -0.11 -1.78 4.86 -26.74 -0.13 -1.91 16 13 C -0.11 -1.89 2.49 -90.97 -0.23 -2.12 16 14 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 15 C 0.16 3.17 5.75 -5.44 -0.03 3.14 16 16 N -0.60 -14.03 2.48 -174.81 -0.43 -14.46 16 17 C -0.25 -6.96 10.13 -15.06 -0.15 -7.11 16 18 H 0.09 2.64 7.97 -52.48 -0.42 2.22 16 19 C 0.02 0.46 5.35 -17.43 -0.09 0.37 16 20 N -0.91 -27.98 13.97 55.49 0.78 -27.20 16 21 Si 0.89 22.75 24.27 -169.99 -4.12 18.62 16 22 H -0.29 -7.32 6.69 56.52 0.38 -6.94 16 23 H -0.31 -8.07 7.11 56.52 0.40 -7.67 16 24 H -0.27 -6.70 6.00 56.52 0.34 -6.36 16 25 C 0.12 2.74 4.13 -3.74 -0.02 2.72 16 26 C -0.14 -2.70 5.02 -26.60 -0.13 -2.84 16 27 C 0.15 2.70 2.64 -67.56 -0.18 2.52 16 28 H 0.10 1.81 7.06 -51.93 -0.37 1.44 16 29 N -0.20 -2.67 8.79 32.85 0.29 -2.38 16 30 N -0.07 -0.78 13.65 60.35 0.82 0.04 16 31 H 0.07 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.06 0.10 8.14 -51.92 -0.42 -0.32 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.10 0.16 8.08 -51.92 -0.42 -0.26 16 37 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.07 1.00 7.27 -51.93 -0.38 0.62 16 40 H 0.12 1.66 4.10 -78.97 -0.32 1.34 16 41 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.56 6.16 -51.93 -0.32 1.24 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.28 7.80 -51.93 -0.40 0.87 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 48 H 0.03 0.72 7.02 -51.93 -0.36 0.36 16 49 H 0.07 1.75 3.35 -51.93 -0.17 1.58 16 50 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 51 H 0.07 1.43 5.33 -51.93 -0.28 1.15 16 LS Contribution 384.20 15.07 5.79 5.79 Total: -1.00 -33.59 384.20 -7.44 -41.02 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.16 Total: -0.76 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -1.81 Total: 1.96 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: 0.79 Total: -56.96 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.12 Total: 18.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.59 -7.44 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021702007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.354 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds