Wall clock time and date at job start Wed Apr 1 2020 05:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47287 * 2 1 4 4 N 1.46499 * 109.47089 * 180.02562 * 3 2 1 5 5 C 1.34816 * 126.59382 * 125.00285 * 4 3 2 6 6 C 1.36591 * 106.83669 * 179.97438 * 5 4 3 7 7 C 1.47530 * 125.77239 * 179.97438 * 6 5 4 8 8 O 1.21595 * 119.99433 * 6.57057 * 7 6 5 9 9 N 1.34771 * 120.00397 * 186.56885 * 7 6 5 10 10 C 1.46955 * 120.84697 * 7.14556 * 9 7 6 11 11 C 1.53138 * 109.01954 * 125.94895 * 10 9 7 12 12 C 1.53120 * 109.48246 * 54.07193 * 11 10 9 13 13 C 1.52854 * 109.34970 * 299.35858 * 12 11 10 14 14 H 1.09002 * 109.24947 * 302.48102 * 13 12 11 15 15 C 1.52768 * 110.20421 * 182.43393 * 13 12 11 16 16 N 1.44104 * 110.28847 * 293.50768 * 15 13 12 17 17 C 1.36941 * 121.34936 * 126.17739 * 16 15 13 18 18 H 1.08003 * 119.99588 * 340.64619 * 17 16 15 19 19 C 1.38811 * 120.00162 * 160.63637 * 17 16 15 20 20 N 1.31623 * 120.00008 * 160.08179 * 19 17 16 21 21 Si 1.86801 * 120.00146 * 340.08612 * 19 17 16 22 22 H 1.48497 * 109.47297 * 95.62496 * 21 19 17 23 23 H 1.48496 * 109.47033 * 215.62821 * 21 19 17 24 24 H 1.48503 * 109.46945 * 335.62591 * 21 19 17 25 25 C 1.46974 * 117.88331 * 305.99470 * 16 15 13 26 26 C 1.53091 * 108.61861 * 54.49140 * 25 16 15 27 27 C 1.47301 * 120.84790 * 186.86877 * 9 7 6 28 28 H 1.09000 * 110.07774 * 355.11951 * 27 9 7 29 29 N 1.34401 * 108.46064 * 359.97438 * 6 5 4 30 30 N 1.28763 * 109.52488 * 359.73464 * 29 6 5 31 31 H 1.09000 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47159 * 300.00381 * 1 2 3 33 33 H 1.09008 * 109.47367 * 59.99492 * 1 2 3 34 34 H 1.08997 * 109.47417 * 119.99997 * 2 1 3 35 35 H 1.08996 * 109.47075 * 240.00378 * 2 1 3 36 36 H 1.09007 * 109.46872 * 300.00262 * 3 2 1 37 37 H 1.08992 * 109.47002 * 59.99754 * 3 2 1 38 38 H 1.07999 * 126.58304 * 359.96858 * 5 4 3 39 39 H 1.08999 * 109.54492 * 245.81539 * 10 9 7 40 40 H 1.08998 * 109.54208 * 6.08800 * 10 9 7 41 41 H 1.09004 * 109.46910 * 174.07340 * 11 10 9 42 42 H 1.08999 * 109.46991 * 294.07203 * 11 10 9 43 43 H 1.08998 * 109.49056 * 59.32134 * 12 11 10 44 44 H 1.09004 * 109.48850 * 179.36689 * 12 11 10 45 45 H 1.08994 * 109.52260 * 52.56876 * 15 13 12 46 46 H 1.09001 * 109.51552 * 172.73373 * 15 13 12 47 47 H 0.97002 * 119.99734 * 179.97438 * 20 19 17 48 48 H 1.09007 * 109.60449 * 294.75533 * 25 16 15 49 49 H 1.08996 * 109.61169 * 174.24206 * 25 16 15 50 50 H 1.09009 * 109.45056 * 184.62439 * 26 25 16 51 51 H 1.08998 * 109.43706 * 64.68374 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3083 2.0635 -0.8875 6 6 5.5940 1.7990 -0.5095 7 6 6.8100 2.2778 -1.1941 8 8 6.7186 3.0681 -2.1137 9 7 8.0220 1.8393 -0.8003 10 6 8.1480 0.7705 0.2004 11 6 9.0253 -0.3472 -0.3709 12 6 10.3582 0.2404 -0.8427 13 6 10.0964 1.2758 -1.9363 14 1 9.5523 0.8044 -2.7547 15 6 11.4179 1.8315 -2.4640 16 7 12.0856 2.5918 -1.4380 17 6 13.3782 2.3198 -1.0769 18 1 13.8148 1.3609 -1.3144 19 6 14.1274 3.2765 -0.4059 20 7 15.1922 2.9170 0.2792 21 14 13.6245 5.0742 -0.4752 22 1 12.8085 5.4063 0.7202 23 1 14.8395 5.9276 -0.4979 24 1 12.8255 5.3177 -1.7030 25 6 11.3362 3.6769 -0.7891 26 6 10.0268 3.1055 -0.2387 27 6 9.2540 2.4149 -1.3664 28 1 9.0070 3.1259 -2.1548 29 7 5.5640 1.0289 0.5915 30 7 4.3412 0.8024 0.9252 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.9954 2.6562 -1.7343 39 1 8.6084 1.1697 1.1042 40 1 7.1606 0.3743 0.4370 41 1 9.2105 -1.0941 0.4011 42 1 8.5156 -0.8142 -1.2136 43 1 10.8627 0.7181 -0.0029 44 1 10.9871 -0.5568 -1.2391 45 1 12.0686 1.0075 -2.7567 46 1 11.2261 2.4692 -3.3270 47 1 15.7160 3.5856 0.7478 48 1 11.1171 4.4571 -1.5182 49 1 11.9266 4.0916 0.0279 50 1 9.4227 3.9140 0.1732 51 1 10.2483 2.3820 0.5458 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021702007.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:50:09 Heat of formation + Delta-G solvation = 79.731514 kcal Electronic energy + Delta-G solvation = -31818.806907 eV Core-core repulsion = 27755.710296 eV Total energy + Delta-G solvation = -4063.096611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.32938 -41.59732 -39.56662 -37.42287 -36.91788 -34.55342 -33.92279 -33.58416 -32.60891 -31.66275 -31.49208 -28.13458 -27.30997 -26.65923 -24.59543 -24.33698 -23.88827 -23.33296 -22.85711 -22.33491 -20.85283 -19.52100 -18.65822 -18.53167 -17.76179 -17.35598 -17.20899 -16.85110 -16.33995 -16.15727 -15.90346 -15.75777 -15.55525 -15.34314 -15.14027 -14.62665 -14.52537 -14.37293 -14.19946 -13.91979 -13.85361 -13.63252 -13.60024 -13.41457 -13.14801 -12.96099 -12.77771 -12.54024 -12.35743 -12.24645 -12.17020 -11.85150 -11.78687 -11.74994 -11.59226 -11.47650 -11.28878 -11.22742 -11.09433 -10.89811 -10.64497 -10.37233 -9.57593 -9.01793 -8.11481 -5.39872 0.14018 0.56465 1.09185 1.29106 1.42370 1.49443 1.89021 2.17337 2.42002 3.07634 3.08865 3.31199 3.38228 3.60959 3.77615 3.83640 3.84326 3.94226 4.02029 4.07205 4.16119 4.17890 4.20472 4.24178 4.34041 4.40379 4.48837 4.52711 4.55211 4.60649 4.69697 4.79963 4.81824 4.85780 4.89709 4.94944 4.99886 5.06353 5.11733 5.12564 5.16953 5.22436 5.27752 5.32941 5.37253 5.49520 5.60375 5.63417 5.85109 6.14850 6.37564 6.82178 6.91600 7.08353 7.65234 8.04224 9.07318 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025018 B = 0.002474 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.919960 B =11315.207184 C =11644.725191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.346 5.346 5 C 0.112 3.888 6 C -0.121 4.121 7 C 0.600 3.400 8 O -0.572 6.572 9 N -0.590 5.590 10 C 0.087 3.913 11 C -0.122 4.122 12 C -0.104 4.104 13 C -0.101 4.101 14 H 0.082 0.918 15 C 0.156 3.844 16 N -0.608 5.608 17 C -0.233 4.233 18 H 0.064 0.936 19 C -0.043 4.043 20 N -0.958 5.958 21 Si 0.947 3.053 22 H -0.285 1.285 23 H -0.317 1.317 24 H -0.256 1.256 25 C 0.120 3.880 26 C -0.132 4.132 27 C 0.162 3.838 28 H 0.088 0.912 29 N -0.222 5.222 30 N -0.085 5.085 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.140 0.860 37 H 0.113 0.887 38 H 0.237 0.763 39 H 0.059 0.941 40 H 0.133 0.867 41 H 0.087 0.913 42 H 0.068 0.932 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.031 0.969 47 H 0.259 0.741 48 H 0.039 0.961 49 H 0.051 0.949 50 H 0.065 0.935 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.942 -5.317 -2.056 34.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.130 5.130 5 C -0.046 4.046 6 C -0.260 4.260 7 C 0.388 3.612 8 O -0.452 6.452 9 N -0.319 5.319 10 C -0.036 4.036 11 C -0.160 4.160 12 C -0.142 4.142 13 C -0.122 4.122 14 H 0.100 0.900 15 C 0.030 3.970 16 N -0.330 5.330 17 C -0.362 4.362 18 H 0.082 0.918 19 C -0.237 4.237 20 N -0.606 5.606 21 Si 0.778 3.222 22 H -0.213 1.213 23 H -0.247 1.247 24 H -0.181 1.181 25 C -0.006 4.006 26 C -0.172 4.172 27 C 0.059 3.941 28 H 0.107 0.893 29 N -0.095 5.095 30 N -0.065 5.065 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.158 0.842 37 H 0.131 0.869 38 H 0.253 0.747 39 H 0.078 0.922 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.084 0.916 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -33.905 -5.768 -1.200 34.413 hybrid contribution 0.723 1.486 -0.466 1.717 sum -33.181 -4.282 -1.666 33.498 Atomic orbital electron populations 1.21681 0.92370 1.03056 1.03278 1.21778 0.98101 0.94313 1.03040 1.22669 0.69885 1.00598 1.07681 1.50837 1.10074 1.33692 1.18442 1.23815 0.88910 0.95746 0.96116 1.21363 0.94857 1.09853 0.99975 1.17110 0.82109 0.80194 0.81791 1.90761 1.86649 1.37213 1.30534 1.48225 1.04653 1.37300 1.41761 1.22540 1.04213 0.87049 0.89809 1.21871 0.95100 0.97510 1.01526 1.21418 0.97058 0.97467 0.98263 1.21677 0.96312 0.95666 0.98553 0.89990 1.20440 0.92249 0.94675 0.89667 1.43737 1.10280 1.37359 1.41670 1.18887 0.87978 0.98197 1.31175 0.91843 1.25674 0.96848 1.01562 0.99592 1.69945 1.21294 1.34330 1.34986 0.85985 0.75203 0.82265 0.78707 1.21293 1.24708 1.18081 1.21423 0.92195 0.91193 0.95760 1.22252 0.96078 1.00269 0.98629 1.21029 0.82600 0.95200 0.95281 0.89343 1.74357 1.13006 1.11093 1.11016 1.81916 0.93610 1.18404 1.12575 0.91927 0.91489 0.90924 0.91813 0.91727 0.84164 0.86879 0.74698 0.92245 0.85005 0.89474 0.91367 0.93014 0.92113 0.92051 0.95125 0.93187 0.94342 0.93126 0.91624 0.91395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.29 9.91 71.98 0.71 0.42 16 2 C -0.13 -0.75 6.14 30.59 0.19 -0.56 16 3 C 0.11 0.48 6.54 86.38 0.56 1.05 16 4 N -0.35 -4.73 3.69 -347.09 -1.28 -6.01 16 5 C 0.11 1.74 11.28 83.85 0.95 2.68 16 6 C -0.12 -2.89 6.71 40.82 0.27 -2.62 16 7 C 0.60 17.79 7.69 86.69 0.67 18.46 16 8 O -0.57 -19.34 16.34 -4.02 -0.07 -19.41 16 9 N -0.59 -17.76 2.66 -798.51 -2.13 -19.89 16 10 C 0.09 2.35 5.62 86.34 0.49 2.84 16 11 C -0.12 -3.14 6.08 30.68 0.19 -2.96 16 12 C -0.10 -3.34 4.86 30.59 0.15 -3.19 16 13 C -0.10 -3.33 2.49 -11.02 -0.03 -3.36 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.16 6.08 5.75 86.75 0.50 6.58 16 16 N -0.61 -28.53 2.48 -706.97 -1.76 -30.28 16 17 C -0.23 -13.12 10.13 84.03 0.85 -12.27 16 18 H 0.06 3.85 7.97 -2.91 -0.02 3.83 16 19 C -0.04 -2.54 5.35 84.86 0.45 -2.09 16 20 N -0.96 -60.80 13.97 21.65 0.30 -60.49 16 21 Si 0.95 47.88 24.27 68.60 1.66 49.54 16 22 H -0.28 -13.88 6.69 99.48 0.67 -13.21 16 23 H -0.32 -16.40 7.11 99.48 0.71 -15.69 16 24 H -0.26 -12.29 6.00 99.48 0.60 -11.69 16 25 C 0.12 5.26 4.13 86.32 0.36 5.62 16 26 C -0.13 -4.91 5.02 30.68 0.15 -4.76 16 27 C 0.16 5.44 2.64 44.79 0.12 5.56 16 28 H 0.09 3.17 7.06 -2.39 -0.02 3.16 16 29 N -0.22 -5.50 8.79 -49.99 -0.44 -5.93 16 30 N -0.09 -1.82 13.65 37.02 0.51 -1.32 16 31 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.07 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.07 -0.01 8.14 -2.38 -0.02 -0.03 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.14 -0.30 8.08 -2.38 -0.02 -0.32 16 37 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.24 1.93 8.06 -2.91 -0.02 1.91 16 39 H 0.06 1.71 7.27 -2.39 -0.02 1.69 16 40 H 0.13 3.43 4.10 -37.38 -0.15 3.27 16 41 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.05 1.98 6.16 -2.39 -0.01 1.96 16 44 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 45 H 0.06 2.41 7.80 -2.39 -0.02 2.39 16 46 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 48 H 0.04 1.66 7.02 -2.38 -0.02 1.64 16 49 H 0.05 2.46 3.35 -2.39 -0.01 2.45 16 50 H 0.07 2.28 8.14 -2.38 -0.02 2.27 16 51 H 0.07 2.61 5.33 -2.39 -0.01 2.60 16 Total: -1.00 -74.63 384.20 4.02 -70.61 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.64 Total: 11.77 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 6.58 Total: 11.41 kcal Atomic # 7 Polarization: -119.13 SS G_CDS: -4.80 Total: -123.92 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.07 Total: -19.41 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 1.66 Total: 49.54 kcal Total: -74.63 4.02 -70.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021702007.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.342 kcal (2) G-P(sol) polarization free energy of solvation -74.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds