Wall clock time and date at job start Wed Apr 1 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47752 * 2 1 4 4 C 1.36598 * 126.57382 * 270.02834 * 3 2 1 5 5 C 1.47519 * 125.77680 * 0.02983 * 4 3 2 6 6 O 1.21599 * 119.99582 * 6.07145 * 5 4 3 7 7 N 1.34773 * 120.00336 * 186.06520 * 5 4 3 8 8 C 1.46947 * 120.44137 * 355.10086 * 7 5 4 9 9 C 1.53588 * 108.52275 * 125.71793 * 8 7 5 10 10 H 1.09001 * 110.60144 * 172.17722 * 9 8 7 11 11 C 1.53371 * 108.69035 * 294.37287 * 9 8 7 12 12 C 1.53462 * 109.21183 * 60.41422 * 11 9 8 13 13 C 1.53016 * 109.91902 * 60.30905 * 12 11 9 14 14 C 1.53369 * 109.24887 * 299.63344 * 13 12 11 15 15 H 1.08995 * 111.08538 * 177.84855 * 14 13 12 16 16 C 1.46941 * 120.44504 * 175.07460 * 7 5 4 17 17 N 1.47569 * 107.77203 * 51.15890 * 9 8 7 18 18 C 1.36944 * 121.61176 * 120.44544 * 17 9 8 19 19 H 1.07997 * 119.99783 * 335.14204 * 18 17 9 20 20 C 1.38811 * 119.99566 * 155.13494 * 18 17 9 21 21 N 1.31614 * 120.00257 * 335.45863 * 20 18 17 22 22 Si 1.86802 * 119.99628 * 155.45341 * 20 18 17 23 23 H 1.48502 * 109.47258 * 85.00197 * 22 20 18 24 24 H 1.48499 * 109.47037 * 205.00394 * 22 20 18 25 25 H 1.48498 * 109.47350 * 324.99985 * 22 20 18 26 26 N 1.34408 * 108.45277 * 179.77134 * 4 3 2 27 27 N 1.28762 * 109.52408 * 0.22446 * 26 4 3 28 28 N 1.34815 * 126.58159 * 90.18783 * 3 2 1 29 29 C 1.46499 * 126.59442 * 359.97438 * 28 3 2 30 30 C 1.52999 * 109.47353 * 270.24305 * 29 28 3 31 31 H 1.08996 * 109.46647 * 60.00303 * 1 2 3 32 32 H 1.08997 * 109.47481 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47086 * 300.00404 * 1 2 3 34 34 H 1.09003 * 109.46791 * 239.99242 * 2 1 3 35 35 H 1.09010 * 109.46853 * 119.99729 * 2 1 3 36 36 H 1.08997 * 109.63105 * 6.00634 * 8 7 5 37 37 H 1.09006 * 109.78925 * 245.52166 * 8 7 5 38 38 H 1.08994 * 109.50905 * 180.24642 * 11 9 8 39 39 H 1.08997 * 109.50197 * 300.37062 * 11 9 8 40 40 H 1.08999 * 109.17409 * 300.28094 * 12 11 9 41 41 H 1.09006 * 109.48388 * 180.52402 * 12 11 9 42 42 H 1.09001 * 109.50576 * 179.70515 * 13 12 11 43 43 H 1.09003 * 109.54526 * 59.59342 * 13 12 11 44 44 H 1.08999 * 109.62217 * 353.97767 * 16 7 5 45 45 H 1.08998 * 109.62362 * 114.35302 * 16 7 5 46 46 H 0.97002 * 120.00014 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.47139 * 30.24440 * 29 28 3 48 48 H 1.09000 * 109.46954 * 150.24434 * 29 28 3 49 49 H 1.08999 * 109.47106 * 180.02562 * 30 29 28 50 50 H 1.08993 * 109.47279 * 300.00433 * 30 29 28 51 51 H 1.09000 * 109.46985 * 60.00147 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3034 2.1883 -1.0970 5 6 2.1530 1.7670 -2.5028 6 8 1.6531 0.6899 -2.7645 7 7 2.5695 2.5760 -3.4969 8 6 3.0756 3.9229 -3.1982 9 6 4.4709 4.0695 -3.8232 10 1 4.8214 5.0984 -3.7418 11 6 5.4297 3.1027 -3.1172 12 6 4.9277 1.6650 -3.3072 13 6 4.8783 1.3229 -4.7978 14 6 3.9180 2.2864 -5.5062 15 1 3.8889 2.0931 -6.5785 16 6 2.5241 2.1229 -4.8940 17 7 4.3753 3.6637 -5.2387 18 6 4.6901 4.5256 -6.2553 19 1 4.6258 5.5922 -6.0983 20 6 5.0919 4.0283 -7.4874 21 7 5.6312 2.8305 -7.5695 22 14 4.8669 5.0590 -9.0290 23 1 6.0230 5.9783 -9.1829 24 1 4.7829 4.1668 -10.2131 25 1 3.6160 5.8513 -8.9166 26 7 2.7247 3.3942 -0.6790 27 7 2.7373 3.4232 0.6083 28 7 2.3037 2.1770 1.0826 29 6 2.1662 1.7759 2.4849 30 6 0.7566 2.1122 2.9756 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5140 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 3.1419 4.0581 -2.1187 37 1 2.4048 4.6712 -3.6204 38 1 6.4262 3.1990 -3.5480 39 1 5.4677 3.3396 -2.0539 40 1 3.9283 1.5756 -2.8815 41 1 5.6011 0.9747 -2.7991 42 1 4.5261 0.2992 -4.9248 43 1 5.8752 1.4208 -5.2277 44 1 2.2280 1.0745 -4.9294 45 1 1.8062 2.7250 -5.4510 46 1 5.9116 2.4829 -8.4306 47 1 2.3357 0.7029 2.5741 48 1 2.8986 2.3110 3.0893 49 1 0.6545 1.8142 4.0191 50 1 0.5871 3.1852 2.8863 51 1 0.0242 1.5772 2.3712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039909232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:49 Heat of formation + Delta-G solvation = 122.262064 kcal Electronic energy + Delta-G solvation = -33574.580127 eV Core-core repulsion = 29513.327779 eV Total energy + Delta-G solvation = -4061.252348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -42.42388 -40.21260 -37.59426 -36.05224 -34.05006 -33.77161 -32.57893 -31.84360 -30.82297 -30.43731 -29.65763 -26.81066 -25.62193 -24.72283 -24.32486 -23.74685 -22.67978 -21.40396 -21.20023 -20.40396 -19.63150 -18.22351 -17.59787 -16.53564 -16.29376 -15.82144 -15.51949 -15.00000 -14.90098 -14.65747 -14.45069 -14.15056 -13.90036 -13.58107 -13.39568 -13.32725 -13.00849 -12.88728 -12.77516 -12.66140 -12.51688 -12.46697 -12.14438 -11.87739 -11.72814 -11.52825 -11.41547 -11.16626 -11.15040 -10.96335 -10.60320 -10.34316 -10.30634 -10.15623 -10.06180 -9.89204 -9.85948 -9.69149 -9.32301 -9.10693 -9.02166 -8.41584 -7.73782 -6.55704 -5.76777 -3.11943 1.10364 1.82416 1.91275 3.40635 3.43589 3.48774 3.52117 3.57452 4.06700 4.09895 4.41327 4.45132 4.53130 4.62012 4.70264 4.87174 5.02945 5.03590 5.18398 5.22401 5.30721 5.37754 5.47714 5.53565 5.62240 5.64644 5.85051 5.88645 5.93507 5.97965 6.03375 6.04701 6.13710 6.25211 6.34010 6.45594 6.48851 6.57389 6.61394 6.68793 6.77221 6.91013 7.04854 7.05910 7.18534 7.24152 7.55376 7.64499 7.83493 7.90709 8.08353 8.42361 8.56586 9.20143 9.85093 10.46964 11.30388 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.003301 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.098848 B = 8479.140442 C = 8872.647518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C 0.121 3.879 4 C -0.088 4.088 5 C 0.598 3.402 6 O -0.552 6.552 7 N -0.569 5.569 8 C 0.055 3.945 9 C 0.156 3.844 10 H 0.076 0.924 11 C -0.119 4.119 12 C -0.136 4.136 13 C -0.113 4.113 14 C 0.179 3.821 15 H 0.112 0.888 16 C 0.093 3.907 17 N -0.580 5.580 18 C -0.249 4.249 19 H 0.067 0.933 20 C 0.003 3.997 21 N -0.891 5.891 22 Si 0.894 3.106 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.281 1.281 26 N -0.196 5.196 27 N -0.074 5.074 28 N -0.360 5.360 29 C 0.117 3.883 30 C -0.173 4.173 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.253 0.747 47 H 0.100 0.900 48 H 0.106 0.894 49 H 0.083 0.917 50 H 0.069 0.931 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.096 -5.869 20.754 23.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 C -0.017 4.017 4 C -0.228 4.228 5 C 0.385 3.615 6 O -0.432 6.432 7 N -0.299 5.299 8 C -0.070 4.070 9 C 0.048 3.952 10 H 0.094 0.906 11 C -0.158 4.158 12 C -0.174 4.174 13 C -0.152 4.152 14 C 0.071 3.929 15 H 0.130 0.870 16 C -0.031 4.031 17 N -0.301 5.301 18 C -0.378 4.378 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.207 1.207 26 N -0.068 5.068 27 N -0.051 5.051 28 N -0.146 5.146 29 C -0.004 4.004 30 C -0.231 4.231 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.134 0.866 35 H 0.094 0.906 36 H 0.151 0.849 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.058 0.942 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.118 0.882 48 H 0.124 0.876 49 H 0.101 0.899 50 H 0.088 0.912 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.784 -5.058 20.875 23.205 hybrid contribution -0.090 -0.297 -0.985 1.033 sum -8.874 -5.355 19.889 22.428 Atomic orbital electron populations 1.21717 0.93173 1.02711 1.02384 1.20425 0.97261 0.87353 1.05075 1.21866 0.97215 0.96286 0.86304 1.21353 1.13736 0.91985 0.95681 1.16539 0.78213 0.84236 0.82480 1.90725 1.46560 1.22627 1.83265 1.47970 1.59647 1.15660 1.06657 1.23465 0.96930 0.81679 1.04944 1.21177 0.91494 0.96795 0.85773 0.90606 1.21968 0.99913 0.96151 0.97786 1.22163 1.01540 0.95728 0.97989 1.21792 1.02169 0.97053 0.94175 1.20992 0.87528 0.84464 0.99870 0.87049 1.22490 1.01168 0.99751 0.79655 1.44481 1.75643 1.10582 0.99414 1.19105 1.39314 0.89091 0.90330 0.91490 1.24878 0.98614 0.97109 0.98940 1.70085 1.41022 1.18539 1.23869 0.86443 0.78155 0.79597 0.83387 1.21524 1.21674 1.20672 1.74190 1.11418 1.17983 1.03195 1.81999 1.20050 0.98959 1.04139 1.50420 1.45657 1.11238 1.07286 1.21952 1.00077 1.01968 0.76449 1.22258 0.94987 1.03592 1.02297 0.91286 0.91252 0.93156 0.86635 0.90630 0.84871 0.92270 0.92579 0.94213 0.90591 0.95455 0.94531 0.90961 0.90120 0.92052 0.93713 0.88176 0.87608 0.89851 0.91211 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.90 37.16 0.37 -0.87 16 2 C -0.06 -0.61 5.56 -27.88 -0.16 -0.76 16 3 C 0.12 1.52 6.27 -81.88 -0.51 1.00 16 4 C -0.09 -1.42 6.58 -83.55 -0.55 -1.97 16 5 C 0.60 10.93 5.13 -12.48 -0.06 10.86 16 6 O -0.55 -10.52 14.21 5.28 0.08 -10.44 16 7 N -0.57 -11.02 1.65 -173.77 -0.29 -11.31 16 8 C 0.06 1.05 5.78 -3.49 -0.02 1.03 16 9 C 0.16 3.31 3.62 -66.85 -0.24 3.07 16 10 H 0.08 1.60 8.01 -51.93 -0.42 1.18 16 11 C -0.12 -2.45 5.61 -26.30 -0.15 -2.59 16 12 C -0.14 -2.80 5.56 -26.48 -0.15 -2.95 16 13 C -0.11 -2.53 5.58 -26.53 -0.15 -2.68 16 14 C 0.18 4.17 2.69 -67.09 -0.18 3.99 16 15 H 0.11 2.92 5.91 -51.93 -0.31 2.61 16 16 C 0.09 1.91 5.85 -3.74 -0.02 1.89 16 17 N -0.58 -14.18 2.54 -155.71 -0.40 -14.57 16 18 C -0.25 -6.69 9.68 -15.06 -0.15 -6.83 16 19 H 0.07 1.78 7.94 -52.49 -0.42 1.36 16 20 C 0.00 0.09 4.84 -17.43 -0.08 0.01 16 21 N -0.89 -25.05 11.38 55.49 0.63 -24.42 16 22 Si 0.89 21.44 29.62 -169.99 -5.03 16.41 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 N -0.20 -3.18 8.62 32.85 0.28 -2.90 16 27 N -0.07 -1.05 13.78 60.35 0.83 -0.22 16 28 N -0.36 -3.97 3.63 -56.85 -0.21 -4.18 16 29 C 0.12 0.71 7.02 -4.04 -0.03 0.68 16 30 C -0.17 -0.86 10.24 37.16 0.38 -0.47 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.36 6.12 -51.93 -0.32 0.04 16 34 H 0.12 1.38 6.58 -51.93 -0.34 1.04 16 35 H 0.08 0.50 7.18 -51.92 -0.37 0.13 16 36 H 0.13 2.42 3.56 -135.44 -0.48 1.93 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 1.52 2.37 -52.45 -0.12 1.40 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 1.83 8.12 -51.93 -0.42 1.41 16 44 H 0.08 1.62 7.01 -51.93 -0.36 1.26 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.10 0.38 7.16 -51.93 -0.37 0.01 16 48 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 50 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.07 0.37 6.12 -51.93 -0.32 0.05 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -31.29 380.64 -8.11 -39.40 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.04 Total: 3.09 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.70 Total: 3.41 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: 0.86 Total: -57.60 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.29 -8.11 -39.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039909232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.663 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds