Wall clock time and date at job start Wed Apr 1 2020 04:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47752 * 2 1 4 4 C 1.36598 * 126.57382 * 270.02834 * 3 2 1 5 5 C 1.47519 * 125.77680 * 0.02983 * 4 3 2 6 6 O 1.21599 * 119.99582 * 6.07145 * 5 4 3 7 7 N 1.34773 * 120.00336 * 186.06520 * 5 4 3 8 8 C 1.46947 * 120.44137 * 355.10086 * 7 5 4 9 9 C 1.53588 * 108.52275 * 125.71793 * 8 7 5 10 10 H 1.09001 * 110.60144 * 172.17722 * 9 8 7 11 11 C 1.53371 * 108.69035 * 294.37287 * 9 8 7 12 12 C 1.53462 * 109.21183 * 60.41422 * 11 9 8 13 13 C 1.53016 * 109.91902 * 60.30905 * 12 11 9 14 14 C 1.53369 * 109.24887 * 299.63344 * 13 12 11 15 15 H 1.08995 * 111.08538 * 177.84855 * 14 13 12 16 16 C 1.46941 * 120.44504 * 175.07460 * 7 5 4 17 17 N 1.47569 * 107.77203 * 51.15890 * 9 8 7 18 18 C 1.36944 * 121.61176 * 120.44544 * 17 9 8 19 19 H 1.07997 * 119.99783 * 335.14204 * 18 17 9 20 20 C 1.38811 * 119.99566 * 155.13494 * 18 17 9 21 21 N 1.31614 * 120.00257 * 335.45863 * 20 18 17 22 22 Si 1.86802 * 119.99628 * 155.45341 * 20 18 17 23 23 H 1.48502 * 109.47258 * 85.00197 * 22 20 18 24 24 H 1.48499 * 109.47037 * 205.00394 * 22 20 18 25 25 H 1.48498 * 109.47350 * 324.99985 * 22 20 18 26 26 N 1.34408 * 108.45277 * 179.77134 * 4 3 2 27 27 N 1.28762 * 109.52408 * 0.22446 * 26 4 3 28 28 N 1.34815 * 126.58159 * 90.18783 * 3 2 1 29 29 C 1.46499 * 126.59442 * 359.97438 * 28 3 2 30 30 C 1.52999 * 109.47353 * 270.24305 * 29 28 3 31 31 H 1.08996 * 109.46647 * 60.00303 * 1 2 3 32 32 H 1.08997 * 109.47481 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47086 * 300.00404 * 1 2 3 34 34 H 1.09003 * 109.46791 * 239.99242 * 2 1 3 35 35 H 1.09010 * 109.46853 * 119.99729 * 2 1 3 36 36 H 1.08997 * 109.63105 * 6.00634 * 8 7 5 37 37 H 1.09006 * 109.78925 * 245.52166 * 8 7 5 38 38 H 1.08994 * 109.50905 * 180.24642 * 11 9 8 39 39 H 1.08997 * 109.50197 * 300.37062 * 11 9 8 40 40 H 1.08999 * 109.17409 * 300.28094 * 12 11 9 41 41 H 1.09006 * 109.48388 * 180.52402 * 12 11 9 42 42 H 1.09001 * 109.50576 * 179.70515 * 13 12 11 43 43 H 1.09003 * 109.54526 * 59.59342 * 13 12 11 44 44 H 1.08999 * 109.62217 * 353.97767 * 16 7 5 45 45 H 1.08998 * 109.62362 * 114.35302 * 16 7 5 46 46 H 0.97002 * 120.00014 * 179.97438 * 21 20 18 47 47 H 1.09001 * 109.47139 * 30.24440 * 29 28 3 48 48 H 1.09000 * 109.46954 * 150.24434 * 29 28 3 49 49 H 1.08999 * 109.47106 * 180.02562 * 30 29 28 50 50 H 1.08993 * 109.47279 * 300.00433 * 30 29 28 51 51 H 1.09000 * 109.46985 * 60.00147 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.3034 2.1883 -1.0970 5 6 2.1530 1.7670 -2.5028 6 8 1.6531 0.6899 -2.7645 7 7 2.5695 2.5760 -3.4969 8 6 3.0756 3.9229 -3.1982 9 6 4.4709 4.0695 -3.8232 10 1 4.8214 5.0984 -3.7418 11 6 5.4297 3.1027 -3.1172 12 6 4.9277 1.6650 -3.3072 13 6 4.8783 1.3229 -4.7978 14 6 3.9180 2.2864 -5.5062 15 1 3.8889 2.0931 -6.5785 16 6 2.5241 2.1229 -4.8940 17 7 4.3753 3.6637 -5.2387 18 6 4.6901 4.5256 -6.2553 19 1 4.6258 5.5922 -6.0983 20 6 5.0919 4.0283 -7.4874 21 7 5.6312 2.8305 -7.5695 22 14 4.8669 5.0590 -9.0290 23 1 6.0230 5.9783 -9.1829 24 1 4.7829 4.1668 -10.2131 25 1 3.6160 5.8513 -8.9166 26 7 2.7247 3.3942 -0.6790 27 7 2.7373 3.4232 0.6083 28 7 2.3037 2.1770 1.0826 29 6 2.1662 1.7759 2.4849 30 6 0.7566 2.1122 2.9756 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8933 -0.5140 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 3.1419 4.0581 -2.1187 37 1 2.4048 4.6712 -3.6204 38 1 6.4262 3.1990 -3.5480 39 1 5.4677 3.3396 -2.0539 40 1 3.9283 1.5756 -2.8815 41 1 5.6011 0.9747 -2.7991 42 1 4.5261 0.2992 -4.9248 43 1 5.8752 1.4208 -5.2277 44 1 2.2280 1.0745 -4.9294 45 1 1.8062 2.7250 -5.4510 46 1 5.9116 2.4829 -8.4306 47 1 2.3357 0.7029 2.5741 48 1 2.8986 2.3110 3.0893 49 1 0.6545 1.8142 4.0191 50 1 0.5871 3.1852 2.8863 51 1 0.0242 1.5772 2.3712 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039909232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:32:48 Heat of formation + Delta-G solvation = 104.255737 kcal Electronic energy + Delta-G solvation = -33575.360940 eV Core-core repulsion = 29513.327779 eV Total energy + Delta-G solvation = -4062.033161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.49851 -41.76427 -39.17110 -36.90101 -35.56577 -34.76041 -34.37004 -33.52761 -32.34200 -31.48266 -30.84243 -28.51560 -27.18594 -25.79179 -25.53383 -24.85836 -24.04605 -23.00859 -22.88103 -21.41423 -20.91462 -20.00197 -18.91831 -18.08064 -17.33524 -17.00191 -16.98569 -16.50549 -16.27074 -15.84545 -15.67940 -15.49309 -15.24705 -14.97305 -14.73791 -14.66344 -14.55367 -14.13742 -13.90467 -13.89918 -13.60914 -13.53292 -13.33864 -13.21479 -13.13958 -13.04454 -12.79033 -12.44713 -12.39461 -12.20903 -12.18164 -11.88189 -11.86709 -11.74597 -11.65291 -11.55656 -11.26444 -11.16657 -11.10722 -10.63688 -10.43099 -10.19988 -9.42627 -8.48700 -7.82238 -5.20292 0.13457 0.59672 1.10298 1.47756 1.51189 1.59768 2.00812 2.21159 2.54655 3.09293 3.28278 3.33243 3.53677 3.56069 3.68837 3.99608 4.05269 4.14571 4.17667 4.22715 4.25493 4.28345 4.30423 4.36506 4.43970 4.47577 4.56084 4.62692 4.76955 4.78056 4.79357 4.83493 4.88997 4.90935 4.98176 5.00240 5.06479 5.11843 5.21012 5.24437 5.32021 5.40348 5.41299 5.45985 5.53585 5.57832 5.68068 5.76404 5.82774 6.39735 6.45670 6.88103 7.14673 7.16290 7.85934 8.45464 9.21784 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022537 B = 0.003301 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.098848 B = 8479.140442 C = 8872.647518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.061 4.061 3 C 0.137 3.863 4 C -0.121 4.121 5 C 0.600 3.400 6 O -0.562 6.562 7 N -0.578 5.578 8 C 0.067 3.933 9 C 0.149 3.851 10 H 0.074 0.926 11 C -0.109 4.109 12 C -0.131 4.131 13 C -0.104 4.104 14 C 0.180 3.820 15 H 0.079 0.921 16 C 0.105 3.895 17 N -0.594 5.594 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.043 4.043 21 N -0.917 5.917 22 Si 0.956 3.044 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.276 1.276 26 N -0.220 5.220 27 N -0.086 5.086 28 N -0.342 5.342 29 C 0.102 3.898 30 C -0.169 4.169 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.153 0.847 37 H 0.054 0.946 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.037 0.963 42 H 0.044 0.956 43 H 0.036 0.964 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.248 0.752 47 H 0.134 0.866 48 H 0.119 0.881 49 H 0.113 0.887 50 H 0.051 0.949 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.327 -6.723 24.157 27.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.101 4.101 3 C -0.002 4.002 4 C -0.261 4.261 5 C 0.389 3.611 6 O -0.442 6.442 7 N -0.308 5.308 8 C -0.058 4.058 9 C 0.042 3.958 10 H 0.092 0.908 11 C -0.148 4.148 12 C -0.169 4.169 13 C -0.143 4.143 14 C 0.072 3.928 15 H 0.097 0.903 16 C -0.019 4.019 17 N -0.316 5.316 18 C -0.389 4.389 19 H 0.083 0.917 20 C -0.239 4.239 21 N -0.562 5.562 22 Si 0.785 3.215 23 H -0.214 1.214 24 H -0.221 1.221 25 H -0.202 1.202 26 N -0.092 5.092 27 N -0.064 5.064 28 N -0.129 5.129 29 C -0.017 4.017 30 C -0.227 4.227 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.136 0.864 36 H 0.169 0.831 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.055 0.945 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.057 0.943 47 H 0.151 0.849 48 H 0.137 0.863 49 H 0.131 0.869 50 H 0.070 0.930 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.028 -5.900 24.339 26.977 hybrid contribution 0.253 -0.086 -1.855 1.874 sum -9.774 -5.986 22.485 25.237 Atomic orbital electron populations 1.21699 0.92261 1.03828 1.01782 1.20569 0.97872 0.85536 1.06088 1.22212 0.95300 0.97025 0.85691 1.21152 1.16663 0.93143 0.95135 1.16818 0.77333 0.83719 0.83256 1.90714 1.46751 1.22962 1.83764 1.47938 1.60636 1.15969 1.06261 1.23378 0.95076 0.81578 1.05776 1.21353 0.93203 0.96859 0.84405 0.90774 1.21841 0.98243 0.96046 0.98657 1.22136 1.02477 0.95846 0.96454 1.21649 0.99915 0.97376 0.95391 1.20837 0.89246 0.84296 0.98383 0.90289 1.22159 0.99093 0.99977 0.80717 1.44647 1.75888 1.10704 1.00349 1.19365 1.38686 0.89498 0.91382 0.91700 1.25528 0.98857 0.98278 1.01230 1.70221 1.42166 1.19970 1.23871 0.85474 0.77962 0.78034 0.80000 1.21434 1.22065 1.20171 1.73967 1.12447 1.18484 1.04258 1.81892 1.20508 1.00684 1.03289 1.50769 1.43552 1.09756 1.08775 1.22571 1.01272 1.04204 0.73638 1.22256 0.93949 1.02418 1.04049 0.94437 0.89314 0.91211 0.88791 0.86419 0.83115 0.92799 0.94979 0.92101 0.89444 0.94448 0.93742 0.94481 0.89656 0.92484 0.94261 0.84853 0.86264 0.86853 0.93021 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.90 71.98 0.71 -1.27 16 2 C -0.06 -1.00 5.56 29.85 0.17 -0.83 16 3 C 0.14 3.07 6.27 41.72 0.26 3.33 16 4 C -0.12 -3.72 6.58 40.81 0.27 -3.45 16 5 C 0.60 21.51 5.13 86.69 0.44 21.96 16 6 O -0.56 -21.04 14.21 -4.03 -0.06 -21.10 16 7 N -0.58 -22.36 1.65 -821.96 -1.36 -23.71 16 8 C 0.07 2.56 5.78 86.49 0.50 3.06 16 9 C 0.15 6.43 3.62 45.11 0.16 6.59 16 10 H 0.07 3.18 8.01 -2.39 -0.02 3.16 16 11 C -0.11 -4.49 5.61 30.87 0.17 -4.31 16 12 C -0.13 -5.38 5.56 30.75 0.17 -5.21 16 13 C -0.10 -4.82 5.58 30.72 0.17 -4.64 16 14 C 0.18 8.67 2.69 44.95 0.12 8.79 16 15 H 0.08 4.34 5.91 -2.39 -0.01 4.33 16 16 C 0.10 4.40 5.85 86.33 0.50 4.90 16 17 N -0.59 -29.91 2.54 -646.54 -1.64 -31.56 16 18 C -0.26 -14.31 9.68 84.03 0.81 -13.49 16 19 H 0.07 3.53 7.94 -2.91 -0.02 3.50 16 20 C -0.04 -2.37 4.84 84.86 0.41 -1.96 16 21 N -0.92 -53.51 11.38 21.65 0.25 -53.27 16 22 Si 0.96 45.27 29.62 68.60 2.03 47.30 16 23 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 N -0.22 -6.85 8.62 -49.99 -0.43 -7.28 16 27 N -0.09 -2.28 13.78 37.02 0.51 -1.77 16 28 N -0.34 -6.46 3.63 -333.78 -1.21 -7.67 16 29 C 0.10 0.77 7.02 86.38 0.61 1.38 16 30 C -0.17 -0.98 10.24 71.98 0.74 -0.24 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.73 6.12 -2.39 -0.01 0.71 16 34 H 0.09 2.03 6.58 -2.39 -0.02 2.02 16 35 H 0.12 0.93 7.18 -2.38 -0.02 0.91 16 36 H 0.15 5.38 3.56 -110.44 -0.39 4.99 16 37 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 38 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.09 3.45 2.37 -3.42 -0.01 3.44 16 41 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.04 1.95 8.12 -2.39 -0.02 1.93 16 44 H 0.09 3.48 7.01 -2.39 -0.02 3.47 16 45 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.25 14.15 8.31 -92.71 -0.77 13.37 16 47 H 0.13 0.21 7.16 -2.39 -0.02 0.19 16 48 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.07 0.43 6.12 -2.39 -0.01 0.42 16 Total: -1.00 -70.64 380.64 4.88 -65.76 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.56 Total: 18.67 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.23 Total: 14.61 kcal Atomic # 7 Polarization: -121.36 SS G_CDS: -3.89 Total: -125.25 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -70.64 4.88 -65.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039909232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.021 kcal (2) G-P(sol) polarization free energy of solvation -70.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds