Wall clock time and date at job start Wed Apr 1 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 N 1.46496 * 109.47599 * 120.00351 * 2 1 3 5 5 C 1.34810 * 126.59673 * 274.99962 * 4 2 1 6 6 C 1.36593 * 106.84321 * 179.73293 * 5 4 2 7 7 C 1.47526 * 125.77143 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00094 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99907 * 180.02562 * 7 6 5 10 10 C 1.47480 * 125.66257 * 359.68361 * 9 7 6 11 11 C 1.55240 * 104.78830 * 155.93250 * 10 9 7 12 12 C 1.54514 * 101.44067 * 36.66858 * 11 10 9 13 13 C 1.47176 * 125.66046 * 179.97438 * 9 7 6 14 14 C 1.52272 * 110.20182 * 83.42155 * 12 11 10 15 15 C 1.53312 * 109.41820 * 182.19912 * 14 12 11 16 16 N 1.46927 * 108.71088 * 306.49160 * 15 14 12 17 17 C 1.36932 * 120.56622 * 234.21152 * 16 15 14 18 18 H 1.08007 * 119.99983 * 152.07857 * 17 16 15 19 19 C 1.38814 * 120.00036 * 332.07867 * 17 16 15 20 20 N 1.31615 * 120.00087 * 342.48428 * 19 17 16 21 21 Si 1.86803 * 119.99978 * 162.48278 * 19 17 16 22 22 H 1.48499 * 109.46737 * 94.33402 * 21 19 17 23 23 H 1.48493 * 109.47250 * 214.33698 * 21 19 17 24 24 H 1.48499 * 109.47085 * 334.33760 * 21 19 17 25 25 C 1.46942 * 118.87067 * 54.22960 * 16 15 14 26 26 C 1.52279 * 110.20692 * 206.60759 * 12 11 10 27 27 N 1.34400 * 108.45719 * 359.97438 * 6 5 4 28 28 N 1.28761 * 109.52419 * 0.02562 * 27 6 5 29 29 H 1.09008 * 109.46848 * 299.99930 * 1 2 3 30 30 H 1.08996 * 109.47646 * 59.99429 * 1 2 3 31 31 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46816 * 240.00624 * 2 1 3 33 33 H 1.08994 * 109.47371 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47385 * 300.00270 * 3 2 1 35 35 H 1.09001 * 109.46971 * 59.99914 * 3 2 1 36 36 H 1.08002 * 126.57802 * 359.73718 * 5 4 2 37 37 H 1.08993 * 110.35765 * 274.88211 * 10 9 7 38 38 H 1.09002 * 110.35393 * 37.16982 * 10 9 7 39 39 H 1.09005 * 111.20159 * 278.56810 * 11 10 9 40 40 H 1.09005 * 110.91275 * 154.63632 * 11 10 9 41 41 H 1.08993 * 109.90759 * 300.83488 * 13 9 7 42 42 H 1.09001 * 109.90873 * 61.90989 * 13 9 7 43 43 H 1.08999 * 109.48219 * 302.17794 * 14 12 11 44 44 H 1.08995 * 109.48418 * 62.21817 * 14 12 11 45 45 H 1.08997 * 109.60250 * 186.72075 * 15 14 12 46 46 H 1.09004 * 109.60127 * 66.25792 * 15 14 12 47 47 H 0.96999 * 120.00282 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.59840 * 185.99472 * 25 16 15 49 49 H 1.09008 * 109.72585 * 65.60246 * 25 16 15 50 50 H 1.08996 * 109.48116 * 297.77354 * 26 12 11 51 51 H 1.09004 * 109.48001 * 57.80017 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1974 -0.1515 2.4186 6 6 2.6583 -1.1506 3.2281 7 6 2.9935 -1.0161 4.6584 8 8 2.8667 0.0580 5.2143 9 7 3.4414 -2.0834 5.3489 10 6 3.6363 -3.4399 4.8039 11 6 4.6947 -4.0921 5.7336 12 6 4.2958 -3.5098 7.1080 13 6 3.8114 -2.0902 6.7733 14 6 3.1693 -4.3313 7.7203 15 6 2.7507 -3.7065 9.0563 16 7 3.9436 -3.5565 9.9008 17 6 3.9739 -4.0855 11.1635 18 1 4.9152 -4.3819 11.6024 19 6 2.7948 -4.2407 11.8794 20 7 1.7131 -3.5848 11.5161 21 14 2.7433 -5.3805 13.3585 22 1 2.9922 -4.5975 14.5955 23 1 1.4080 -6.0248 13.4407 24 1 3.7891 -6.4250 13.2151 25 6 5.1036 -2.8289 9.3675 26 6 5.5070 -3.4597 8.0297 27 7 2.7546 -2.2769 2.5011 28 7 2.3833 -2.0411 1.2910 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.0120 0.8736 2.7034 37 1 2.7019 -4.0000 4.8377 38 1 4.0111 -3.3876 3.7817 39 1 5.7039 -3.7864 5.4574 40 1 4.6016 -5.1782 5.7273 41 1 4.6122 -1.3728 6.9522 42 1 2.9441 -1.8377 7.3833 43 1 2.3168 -4.3422 7.0412 44 1 3.5134 -5.3518 7.8884 45 1 2.0299 -4.3554 9.5536 46 1 2.3035 -2.7284 8.8783 47 1 0.8891 -3.6935 12.0161 48 1 5.9339 -2.8993 10.0701 49 1 4.8422 -1.7818 9.2140 50 1 5.8753 -4.4711 8.2011 51 1 6.2913 -2.8607 7.5670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040899482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:13 Heat of formation + Delta-G solvation = 87.689566 kcal Electronic energy + Delta-G solvation = -31394.050764 eV Core-core repulsion = 27331.299240 eV Total energy + Delta-G solvation = -4062.751524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.44650 -40.11675 -38.25139 -36.87489 -35.76410 -33.09984 -31.82955 -31.26667 -30.72550 -29.91953 -29.13870 -28.04576 -26.77020 -24.94044 -24.19712 -23.31274 -22.48816 -22.08493 -21.13655 -20.57313 -19.80867 -18.09169 -17.64857 -16.60476 -16.42331 -16.28851 -15.74194 -15.30123 -15.15213 -14.87399 -14.79778 -14.08619 -13.92412 -13.73182 -13.63258 -13.26434 -13.12845 -13.07249 -12.97976 -12.85555 -12.70227 -12.29048 -12.20919 -12.17257 -11.93098 -11.80404 -11.63440 -11.31363 -11.13446 -11.06373 -10.77932 -10.65488 -10.60287 -10.37912 -10.18135 -10.06931 -9.96624 -9.75832 -9.46581 -9.43139 -9.29950 -8.43394 -8.33917 -6.59201 -5.72904 -3.14641 0.93958 1.63385 1.71529 3.08772 3.33912 3.40924 3.48232 3.50629 3.79795 4.03047 4.12882 4.31967 4.43122 4.54676 4.68770 4.80298 4.85165 4.88313 4.95150 4.99394 5.01718 5.16740 5.19696 5.38966 5.44649 5.46356 5.47444 5.52882 5.60584 5.75805 5.81044 5.99565 6.07896 6.13006 6.14452 6.15820 6.21298 6.35709 6.38761 6.47473 6.56973 6.68686 6.75505 6.83677 6.93209 7.05674 7.42932 7.64438 7.73182 7.77530 7.85258 8.25669 8.51219 9.27398 9.91412 10.48246 11.35338 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.002242 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.026171 B =12484.968341 C =12778.203868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.356 5.356 5 C 0.092 3.908 6 C -0.091 4.091 7 C 0.611 3.389 8 O -0.543 6.543 9 N -0.598 5.598 10 C 0.102 3.898 11 C -0.129 4.129 12 C -0.055 4.055 13 C 0.119 3.881 14 C -0.127 4.127 15 C 0.170 3.830 16 N -0.591 5.591 17 C -0.250 4.250 18 H 0.065 0.935 19 C 0.001 3.999 20 N -0.902 5.902 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.143 3.857 26 C -0.117 4.117 27 N -0.202 5.202 28 N -0.071 5.071 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.201 0.799 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.019 0.981 47 H 0.253 0.747 48 H 0.053 0.947 49 H 0.019 0.981 50 H 0.064 0.936 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 7.052 -26.197 27.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 C -0.228 4.228 4 N -0.143 5.143 5 C -0.065 4.065 6 C -0.230 4.230 7 C 0.397 3.603 8 O -0.420 6.420 9 N -0.330 5.330 10 C -0.020 4.020 11 C -0.167 4.167 12 C -0.056 4.056 13 C -0.003 4.003 14 C -0.166 4.166 15 C 0.044 3.956 16 N -0.314 5.314 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.547 5.547 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.016 3.984 26 C -0.157 4.157 27 N -0.076 5.076 28 N -0.050 5.050 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.090 0.910 36 H 0.218 0.782 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.037 0.963 47 H 0.063 0.937 48 H 0.072 0.928 49 H 0.037 0.963 50 H 0.082 0.918 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.420 6.374 -26.632 27.388 hybrid contribution -0.358 0.397 1.112 1.234 sum 0.062 6.771 -25.520 26.403 Atomic orbital electron populations 1.22266 0.92457 1.03930 1.03883 1.21631 0.95707 0.93410 0.84987 1.22271 1.02698 0.93336 1.04453 1.50736 1.44687 1.09716 1.09116 1.23230 0.97591 1.01135 0.84508 1.21450 1.14102 0.90458 0.97018 1.16356 0.77596 0.83216 0.83102 1.90816 1.55185 1.26472 1.69544 1.48339 1.63294 1.09616 1.11741 1.22592 0.99170 0.81781 0.98491 1.22957 0.98252 1.00586 0.94881 1.20974 0.97121 0.93471 0.94063 1.22190 1.00934 0.97664 0.79483 1.22096 0.95929 0.99114 0.99460 1.20836 0.89728 0.98003 0.87036 1.44039 1.12283 1.62081 1.12949 1.19173 0.93515 1.34015 0.91253 0.91766 1.25031 0.97203 0.99679 0.97845 1.70040 1.01484 1.41593 1.41537 0.86320 0.76964 0.80923 0.82810 1.21545 1.21637 1.20478 1.20955 0.91288 0.93646 0.92492 1.21916 0.95021 1.01486 0.97241 1.74710 1.11129 1.23148 0.98570 1.81982 1.18516 0.91693 1.12827 0.91363 0.89684 0.91172 0.86835 0.91080 0.89276 0.90959 0.78179 0.91302 0.89158 0.91062 0.89971 0.91471 0.90123 0.93222 0.92197 0.89426 0.96271 0.93707 0.92816 0.96347 0.91774 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 9.52 37.16 0.35 -0.31 16 2 C 0.14 0.69 3.96 -67.93 -0.27 0.42 16 3 C -0.17 -0.50 8.85 37.16 0.33 -0.17 16 4 N -0.36 -3.22 3.54 -54.57 -0.19 -3.41 16 5 C 0.09 0.94 10.40 -16.84 -0.18 0.77 16 6 C -0.09 -1.24 6.84 -83.55 -0.57 -1.82 16 7 C 0.61 10.08 7.85 -12.47 -0.10 9.98 16 8 O -0.54 -10.29 17.19 5.28 0.09 -10.20 16 9 N -0.60 -9.68 3.33 -171.77 -0.57 -10.26 16 10 C 0.10 1.43 5.82 -2.32 -0.01 1.42 16 11 C -0.13 -1.74 6.00 -24.75 -0.15 -1.89 16 12 C -0.06 -0.92 0.53 -154.10 -0.08 -1.00 16 13 C 0.12 2.09 5.05 -3.32 -0.02 2.07 16 14 C -0.13 -2.40 4.78 -26.94 -0.13 -2.53 16 15 C 0.17 4.05 5.03 -3.65 -0.02 4.03 16 16 N -0.59 -14.78 2.98 -172.15 -0.51 -15.29 16 17 C -0.25 -6.88 9.57 -15.06 -0.14 -7.02 16 18 H 0.06 1.74 7.89 -52.48 -0.41 1.32 16 19 C 0.00 0.02 4.90 -17.43 -0.09 -0.06 16 20 N -0.90 -26.51 11.20 55.49 0.62 -25.89 16 21 Si 0.90 21.88 29.59 -169.99 -5.03 16.85 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.14 2.99 6.24 -3.64 -0.02 2.97 16 26 C -0.12 -2.00 4.70 -26.94 -0.13 -2.13 16 27 N -0.20 -2.77 9.39 32.85 0.31 -2.46 16 28 N -0.07 -0.86 13.78 60.35 0.83 -0.03 16 29 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.11 0.45 8.14 -51.92 -0.42 0.03 16 33 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 35 H 0.07 0.21 7.23 -51.93 -0.38 -0.17 16 36 H 0.20 1.51 7.34 -52.49 -0.39 1.13 16 37 H 0.07 0.97 7.74 -51.93 -0.40 0.57 16 38 H 0.09 1.21 6.13 -51.93 -0.32 0.89 16 39 H 0.07 0.90 8.01 -51.93 -0.42 0.49 16 40 H 0.08 1.03 8.01 -51.93 -0.42 0.61 16 41 H 0.07 1.19 7.59 -51.93 -0.39 0.80 16 42 H 0.08 1.64 6.08 -51.93 -0.32 1.32 16 43 H 0.05 0.89 7.47 -51.93 -0.39 0.50 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 2.36 6.02 -51.93 -0.31 2.05 16 46 H 0.02 0.49 6.53 -51.93 -0.34 0.15 16 47 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.05 1.11 7.93 -51.93 -0.41 0.69 16 49 H 0.02 0.40 7.48 -51.92 -0.39 0.01 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -33.55 395.37 -7.93 -41.48 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -8.21 Total: -1.48 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: -1.22 Total: 4.72 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: 0.48 Total: -57.33 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.20 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.55 -7.93 -41.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040899482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.172 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds