Wall clock time and date at job start Wed Apr 1 2020 05:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47262 * 2 1 4 4 N 1.46496 * 109.47599 * 120.00351 * 2 1 3 5 5 C 1.34810 * 126.59673 * 274.99962 * 4 2 1 6 6 C 1.36593 * 106.84321 * 179.73293 * 5 4 2 7 7 C 1.47526 * 125.77143 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00094 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99907 * 180.02562 * 7 6 5 10 10 C 1.47480 * 125.66257 * 359.68361 * 9 7 6 11 11 C 1.55240 * 104.78830 * 155.93250 * 10 9 7 12 12 C 1.54514 * 101.44067 * 36.66858 * 11 10 9 13 13 C 1.47176 * 125.66046 * 179.97438 * 9 7 6 14 14 C 1.52272 * 110.20182 * 83.42155 * 12 11 10 15 15 C 1.53312 * 109.41820 * 182.19912 * 14 12 11 16 16 N 1.46927 * 108.71088 * 306.49160 * 15 14 12 17 17 C 1.36932 * 120.56622 * 234.21152 * 16 15 14 18 18 H 1.08007 * 119.99983 * 152.07857 * 17 16 15 19 19 C 1.38814 * 120.00036 * 332.07867 * 17 16 15 20 20 N 1.31615 * 120.00087 * 342.48428 * 19 17 16 21 21 Si 1.86803 * 119.99978 * 162.48278 * 19 17 16 22 22 H 1.48499 * 109.46737 * 94.33402 * 21 19 17 23 23 H 1.48493 * 109.47250 * 214.33698 * 21 19 17 24 24 H 1.48499 * 109.47085 * 334.33760 * 21 19 17 25 25 C 1.46942 * 118.87067 * 54.22960 * 16 15 14 26 26 C 1.52279 * 110.20692 * 206.60759 * 12 11 10 27 27 N 1.34400 * 108.45719 * 359.97438 * 6 5 4 28 28 N 1.28761 * 109.52419 * 0.02562 * 27 6 5 29 29 H 1.09008 * 109.46848 * 299.99930 * 1 2 3 30 30 H 1.08996 * 109.47646 * 59.99429 * 1 2 3 31 31 H 1.08997 * 109.47396 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46816 * 240.00624 * 2 1 3 33 33 H 1.08994 * 109.47371 * 180.02562 * 3 2 1 34 34 H 1.08996 * 109.47385 * 300.00270 * 3 2 1 35 35 H 1.09001 * 109.46971 * 59.99914 * 3 2 1 36 36 H 1.08002 * 126.57802 * 359.73718 * 5 4 2 37 37 H 1.08993 * 110.35765 * 274.88211 * 10 9 7 38 38 H 1.09002 * 110.35393 * 37.16982 * 10 9 7 39 39 H 1.09005 * 111.20159 * 278.56810 * 11 10 9 40 40 H 1.09005 * 110.91275 * 154.63632 * 11 10 9 41 41 H 1.08993 * 109.90759 * 300.83488 * 13 9 7 42 42 H 1.09001 * 109.90873 * 61.90989 * 13 9 7 43 43 H 1.08999 * 109.48219 * 302.17794 * 14 12 11 44 44 H 1.08995 * 109.48418 * 62.21817 * 14 12 11 45 45 H 1.08997 * 109.60250 * 186.72075 * 15 14 12 46 46 H 1.09004 * 109.60127 * 66.25792 * 15 14 12 47 47 H 0.96999 * 120.00282 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.59840 * 185.99472 * 25 16 15 49 49 H 1.09008 * 109.72585 * 65.60246 * 25 16 15 50 50 H 1.08996 * 109.48116 * 297.77354 * 26 12 11 51 51 H 1.09004 * 109.48001 * 57.80017 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1974 -0.1515 2.4186 6 6 2.6583 -1.1506 3.2281 7 6 2.9935 -1.0161 4.6584 8 8 2.8667 0.0580 5.2143 9 7 3.4414 -2.0834 5.3489 10 6 3.6363 -3.4399 4.8039 11 6 4.6947 -4.0921 5.7336 12 6 4.2958 -3.5098 7.1080 13 6 3.8114 -2.0902 6.7733 14 6 3.1693 -4.3313 7.7203 15 6 2.7507 -3.7065 9.0563 16 7 3.9436 -3.5565 9.9008 17 6 3.9739 -4.0855 11.1635 18 1 4.9152 -4.3819 11.6024 19 6 2.7948 -4.2407 11.8794 20 7 1.7131 -3.5848 11.5161 21 14 2.7433 -5.3805 13.3585 22 1 2.9922 -4.5975 14.5955 23 1 1.4080 -6.0248 13.4407 24 1 3.7891 -6.4250 13.2151 25 6 5.1036 -2.8289 9.3675 26 6 5.5070 -3.4597 8.0297 27 7 2.7546 -2.2769 2.5011 28 7 2.3833 -2.0411 1.2910 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 2.0120 0.8736 2.7034 37 1 2.7019 -4.0000 4.8377 38 1 4.0111 -3.3876 3.7817 39 1 5.7039 -3.7864 5.4574 40 1 4.6016 -5.1782 5.7273 41 1 4.6122 -1.3728 6.9522 42 1 2.9441 -1.8377 7.3833 43 1 2.3168 -4.3422 7.0412 44 1 3.5134 -5.3518 7.8884 45 1 2.0299 -4.3554 9.5536 46 1 2.3035 -2.7284 8.8783 47 1 0.8891 -3.6935 12.0161 48 1 5.9339 -2.8993 10.0701 49 1 4.8422 -1.7818 9.2140 50 1 5.8753 -4.4711 8.2011 51 1 6.2913 -2.8607 7.5670 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040899482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:49:12 Heat of formation + Delta-G solvation = 66.361253 kcal Electronic energy + Delta-G solvation = -31394.975629 eV Core-core repulsion = 27331.299240 eV Total energy + Delta-G solvation = -4063.676389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.32797 -41.45689 -39.64417 -37.48196 -37.34915 -34.79243 -32.90204 -32.51314 -31.82282 -31.62045 -30.56580 -28.39233 -28.17820 -26.56489 -24.97920 -24.72048 -23.91247 -23.53217 -22.19018 -21.78591 -20.82142 -19.71678 -18.73229 -18.20753 -17.51721 -17.39326 -16.82707 -16.75447 -16.43990 -15.84198 -15.67628 -15.53852 -15.36483 -15.14198 -14.82625 -14.64877 -14.42892 -14.22277 -13.91705 -13.74980 -13.59979 -13.47498 -13.20870 -13.16595 -13.02165 -12.98394 -12.77872 -12.56597 -12.54239 -12.44304 -12.22388 -12.14334 -11.98462 -11.89113 -11.78915 -11.46197 -11.33999 -11.23904 -11.05696 -10.93171 -10.49965 -10.41947 -9.67446 -8.63808 -7.84596 -5.29752 0.10769 0.57576 1.03901 1.47018 1.48405 1.58803 1.89516 2.16114 2.53145 3.06048 3.28414 3.30323 3.52321 3.65040 3.72625 3.77073 3.79052 3.85186 3.90918 4.00046 4.19580 4.27208 4.28341 4.43082 4.49207 4.56847 4.60516 4.63274 4.68559 4.73608 4.76494 4.77439 4.80106 4.88748 4.93777 5.01228 5.05866 5.12694 5.15764 5.20010 5.20490 5.29822 5.36189 5.40629 5.44595 5.48857 5.54548 5.67515 5.80135 6.41558 6.41952 6.78864 7.04141 7.17247 7.89588 8.41494 9.21491 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.002242 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.026171 B =12484.968341 C =12778.203868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.134 3.866 3 C -0.166 4.166 4 N -0.341 5.341 5 C 0.109 3.891 6 C -0.118 4.118 7 C 0.608 3.392 8 O -0.578 6.578 9 N -0.602 5.602 10 C 0.106 3.894 11 C -0.114 4.114 12 C -0.052 4.052 13 C 0.126 3.874 14 C -0.111 4.111 15 C 0.179 3.821 16 N -0.608 5.608 17 C -0.258 4.258 18 H 0.069 0.931 19 C -0.055 4.055 20 N -0.938 5.938 21 Si 0.967 3.033 22 H -0.288 1.288 23 H -0.294 1.294 24 H -0.267 1.267 25 C 0.137 3.863 26 C -0.104 4.104 27 N -0.217 5.217 28 N -0.086 5.086 29 H 0.063 0.937 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.227 0.773 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.043 0.957 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.051 0.949 46 H -0.011 1.011 47 H 0.248 0.752 48 H 0.055 0.945 49 H 0.007 0.993 50 H 0.071 0.929 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 6.745 -28.893 29.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 C -0.224 4.224 4 N -0.127 5.127 5 C -0.049 4.049 6 C -0.258 4.258 7 C 0.396 3.604 8 O -0.458 6.458 9 N -0.333 5.333 10 C -0.016 4.016 11 C -0.151 4.151 12 C -0.053 4.053 13 C 0.003 3.997 14 C -0.150 4.150 15 C 0.053 3.947 16 N -0.331 5.331 17 C -0.388 4.388 18 H 0.086 0.914 19 C -0.250 4.250 20 N -0.584 5.584 21 Si 0.795 3.205 22 H -0.215 1.215 23 H -0.221 1.221 24 H -0.191 1.191 25 C 0.012 3.988 26 C -0.143 4.143 27 N -0.090 5.090 28 N -0.066 5.066 29 H 0.082 0.918 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.143 0.857 33 H 0.083 0.917 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.243 0.757 37 H 0.084 0.916 38 H 0.119 0.881 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.070 0.930 46 H 0.007 0.993 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.025 0.975 50 H 0.090 0.910 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 1.681 6.045 -29.387 30.049 hybrid contribution -0.791 0.633 1.859 2.118 sum 0.889 6.678 -27.527 28.339 Atomic orbital electron populations 1.22275 0.91559 1.03248 1.05095 1.22129 0.96350 0.94364 0.83629 1.22304 1.02305 0.91909 1.05883 1.51087 1.42988 1.08728 1.09849 1.23558 0.95573 1.01490 0.84270 1.21209 1.16726 0.91878 0.95974 1.16765 0.76779 0.82693 0.84203 1.90782 1.56674 1.27719 1.70620 1.48432 1.63192 1.10609 1.11064 1.22676 0.99366 0.80471 0.99101 1.22930 0.98973 1.01549 0.91689 1.20880 0.96010 0.92549 0.95830 1.21952 0.99197 0.98313 0.80212 1.21863 0.97287 0.99133 0.96724 1.20589 0.88994 0.95987 0.89149 1.44310 1.13402 1.62724 1.12698 1.19539 0.93661 1.33414 0.92182 0.91360 1.25822 0.96988 1.01320 1.00882 1.70215 1.01895 1.43331 1.42995 0.85271 0.76816 0.79070 0.79355 1.21459 1.22053 1.19148 1.21120 0.89886 0.93065 0.94749 1.21782 0.95763 1.01948 0.94828 1.74651 1.11824 1.23508 0.99027 1.81890 1.18968 0.93456 1.12237 0.91775 0.86862 0.92769 0.85652 0.91687 0.86693 0.90724 0.75705 0.91566 0.88062 0.89049 0.88001 0.91821 0.93905 0.92401 0.91654 0.93036 0.99308 0.94288 0.92611 0.97515 0.91008 0.89958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 9.52 71.98 0.69 -0.23 16 2 C 0.13 0.96 3.96 44.99 0.18 1.13 16 3 C -0.17 -0.48 8.85 71.98 0.64 0.16 16 4 N -0.34 -5.56 3.54 -326.55 -1.16 -6.71 16 5 C 0.11 2.09 10.40 83.85 0.87 2.96 16 6 C -0.12 -3.17 6.84 40.82 0.28 -2.89 16 7 C 0.61 20.23 7.85 86.69 0.68 20.91 16 8 O -0.58 -22.49 17.19 -4.02 -0.07 -22.56 16 9 N -0.60 -19.43 3.33 -815.61 -2.72 -22.15 16 10 C 0.11 2.79 5.82 86.96 0.51 3.30 16 11 C -0.11 -2.74 6.00 31.88 0.19 -2.55 16 12 C -0.05 -1.66 0.53 -51.91 -0.03 -1.69 16 13 C 0.13 4.48 5.05 86.48 0.44 4.92 16 14 C -0.11 -4.20 4.78 30.46 0.15 -4.06 16 15 C 0.18 8.91 5.03 86.40 0.43 9.35 16 16 N -0.61 -31.15 2.98 -698.57 -2.08 -33.23 16 17 C -0.26 -14.42 9.57 84.03 0.80 -13.61 16 18 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 19 C -0.06 -3.16 4.90 84.86 0.42 -2.75 16 20 N -0.94 -57.47 11.20 21.65 0.24 -57.23 16 21 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 25 C 0.14 5.77 6.24 86.40 0.54 6.31 16 26 C -0.10 -3.36 4.70 30.46 0.14 -3.21 16 27 N -0.22 -5.74 9.39 -49.99 -0.47 -6.21 16 28 N -0.09 -1.99 13.78 37.02 0.51 -1.48 16 29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 35 H 0.07 0.21 7.23 -2.39 -0.02 0.20 16 36 H 0.23 3.00 7.34 -2.91 -0.02 2.98 16 37 H 0.07 1.79 7.74 -2.39 -0.02 1.77 16 38 H 0.10 2.52 6.13 -2.39 -0.01 2.50 16 39 H 0.09 1.92 8.01 -2.38 -0.02 1.90 16 40 H 0.10 2.14 8.01 -2.38 -0.02 2.12 16 41 H 0.06 2.29 7.59 -2.39 -0.02 2.27 16 42 H 0.04 1.85 6.08 -2.39 -0.01 1.84 16 43 H 0.06 2.07 7.47 -2.39 -0.02 2.06 16 44 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16 45 H 0.05 2.92 6.02 -2.39 -0.01 2.91 16 46 H -0.01 -0.61 6.53 -2.38 -0.02 -0.62 16 47 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 48 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16 49 H 0.01 0.30 7.48 -2.38 -0.02 0.29 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16 Total: -1.00 -76.64 395.37 4.13 -72.51 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.93 Total: 11.15 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 6.92 Total: 18.04 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -5.67 Total: -127.01 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.07 Total: -22.56 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -76.64 4.13 -72.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040899482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.870 kcal (2) G-P(sol) polarization free energy of solvation -76.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds