Wall clock time and date at job start Wed Apr 1 2020 05:49:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47262 * 2 1
4 4 N 1.46496 * 109.47599 * 120.00351 * 2 1 3
5 5 C 1.34810 * 126.59673 * 274.99962 * 4 2 1
6 6 C 1.36593 * 106.84321 * 179.73293 * 5 4 2
7 7 C 1.47526 * 125.77143 * 179.97438 * 6 5 4
8 8 O 1.21598 * 120.00094 * 359.97438 * 7 6 5
9 9 N 1.34775 * 119.99907 * 180.02562 * 7 6 5
10 10 C 1.47480 * 125.66257 * 359.68361 * 9 7 6
11 11 C 1.55240 * 104.78830 * 155.93250 * 10 9 7
12 12 C 1.54514 * 101.44067 * 36.66858 * 11 10 9
13 13 C 1.47176 * 125.66046 * 179.97438 * 9 7 6
14 14 C 1.52272 * 110.20182 * 83.42155 * 12 11 10
15 15 C 1.53312 * 109.41820 * 182.19912 * 14 12 11
16 16 N 1.46927 * 108.71088 * 306.49160 * 15 14 12
17 17 C 1.36932 * 120.56622 * 234.21152 * 16 15 14
18 18 H 1.08007 * 119.99983 * 152.07857 * 17 16 15
19 19 C 1.38814 * 120.00036 * 332.07867 * 17 16 15
20 20 N 1.31615 * 120.00087 * 342.48428 * 19 17 16
21 21 Si 1.86803 * 119.99978 * 162.48278 * 19 17 16
22 22 H 1.48499 * 109.46737 * 94.33402 * 21 19 17
23 23 H 1.48493 * 109.47250 * 214.33698 * 21 19 17
24 24 H 1.48499 * 109.47085 * 334.33760 * 21 19 17
25 25 C 1.46942 * 118.87067 * 54.22960 * 16 15 14
26 26 C 1.52279 * 110.20692 * 206.60759 * 12 11 10
27 27 N 1.34400 * 108.45719 * 359.97438 * 6 5 4
28 28 N 1.28761 * 109.52419 * 0.02562 * 27 6 5
29 29 H 1.09008 * 109.46848 * 299.99930 * 1 2 3
30 30 H 1.08996 * 109.47646 * 59.99429 * 1 2 3
31 31 H 1.08997 * 109.47396 * 179.97438 * 1 2 3
32 32 H 1.09007 * 109.46816 * 240.00624 * 2 1 3
33 33 H 1.08994 * 109.47371 * 180.02562 * 3 2 1
34 34 H 1.08996 * 109.47385 * 300.00270 * 3 2 1
35 35 H 1.09001 * 109.46971 * 59.99914 * 3 2 1
36 36 H 1.08002 * 126.57802 * 359.73718 * 5 4 2
37 37 H 1.08993 * 110.35765 * 274.88211 * 10 9 7
38 38 H 1.09002 * 110.35393 * 37.16982 * 10 9 7
39 39 H 1.09005 * 111.20159 * 278.56810 * 11 10 9
40 40 H 1.09005 * 110.91275 * 154.63632 * 11 10 9
41 41 H 1.08993 * 109.90759 * 300.83488 * 13 9 7
42 42 H 1.09001 * 109.90873 * 61.90989 * 13 9 7
43 43 H 1.08999 * 109.48219 * 302.17794 * 14 12 11
44 44 H 1.08995 * 109.48418 * 62.21817 * 14 12 11
45 45 H 1.08997 * 109.60250 * 186.72075 * 15 14 12
46 46 H 1.09004 * 109.60127 * 66.25792 * 15 14 12
47 47 H 0.96999 * 120.00282 * 179.97438 * 20 19 17
48 48 H 1.09000 * 109.59840 * 185.99472 * 25 16 15
49 49 H 1.09008 * 109.72585 * 65.60246 * 25 16 15
50 50 H 1.08996 * 109.48116 * 297.77354 * 26 12 11
51 51 H 1.09004 * 109.48001 * 57.80017 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0184 -0.6906 1.1961
5 6 2.1974 -0.1515 2.4186
6 6 2.6583 -1.1506 3.2281
7 6 2.9935 -1.0161 4.6584
8 8 2.8667 0.0580 5.2143
9 7 3.4414 -2.0834 5.3489
10 6 3.6363 -3.4399 4.8039
11 6 4.6947 -4.0921 5.7336
12 6 4.2958 -3.5098 7.1080
13 6 3.8114 -2.0902 6.7733
14 6 3.1693 -4.3313 7.7203
15 6 2.7507 -3.7065 9.0563
16 7 3.9436 -3.5565 9.9008
17 6 3.9739 -4.0855 11.1635
18 1 4.9152 -4.3819 11.6024
19 6 2.7948 -4.2407 11.8794
20 7 1.7131 -3.5848 11.5161
21 14 2.7433 -5.3805 13.3585
22 1 2.9922 -4.5975 14.5955
23 1 1.4080 -6.0248 13.4407
24 1 3.7891 -6.4250 13.2151
25 6 5.1036 -2.8289 9.3675
26 6 5.5070 -3.4597 8.0297
27 7 2.7546 -2.2769 2.5011
28 7 2.3833 -2.0411 1.2910
29 1 -0.3633 0.5139 0.8901
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3634 -1.0276 -0.0005
32 1 1.8933 -0.5138 -0.8901
33 1 3.1300 1.4425 -0.0005
34 1 1.6767 1.9564 -0.8899
35 1 1.6767 1.9563 0.8900
36 1 2.0120 0.8736 2.7034
37 1 2.7019 -4.0000 4.8377
38 1 4.0111 -3.3876 3.7817
39 1 5.7039 -3.7864 5.4574
40 1 4.6016 -5.1782 5.7273
41 1 4.6122 -1.3728 6.9522
42 1 2.9441 -1.8377 7.3833
43 1 2.3168 -4.3422 7.0412
44 1 3.5134 -5.3518 7.8884
45 1 2.0299 -4.3554 9.5536
46 1 2.3035 -2.7284 8.8783
47 1 0.8891 -3.6935 12.0161
48 1 5.9339 -2.8993 10.0701
49 1 4.8422 -1.7818 9.2140
50 1 5.8753 -4.4711 8.2011
51 1 6.2913 -2.8607 7.5670
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001040899482.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:49:12
Heat of formation + Delta-G solvation = 66.361253 kcal
Electronic energy + Delta-G solvation = -31394.975629 eV
Core-core repulsion = 27331.299240 eV
Total energy + Delta-G solvation = -4063.676389 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-43.32797 -41.45689 -39.64417 -37.48196 -37.34915 -34.79243 -32.90204 -32.51314
-31.82282 -31.62045 -30.56580 -28.39233 -28.17820 -26.56489 -24.97920 -24.72048
-23.91247 -23.53217 -22.19018 -21.78591 -20.82142 -19.71678 -18.73229 -18.20753
-17.51721 -17.39326 -16.82707 -16.75447 -16.43990 -15.84198 -15.67628 -15.53852
-15.36483 -15.14198 -14.82625 -14.64877 -14.42892 -14.22277 -13.91705 -13.74980
-13.59979 -13.47498 -13.20870 -13.16595 -13.02165 -12.98394 -12.77872 -12.56597
-12.54239 -12.44304 -12.22388 -12.14334 -11.98462 -11.89113 -11.78915 -11.46197
-11.33999 -11.23904 -11.05696 -10.93171 -10.49965 -10.41947 -9.67446 -8.63808
-7.84596 -5.29752 0.10769 0.57576 1.03901 1.47018 1.48405 1.58803
1.89516 2.16114 2.53145 3.06048 3.28414 3.30323 3.52321 3.65040
3.72625 3.77073 3.79052 3.85186 3.90918 4.00046 4.19580 4.27208
4.28341 4.43082 4.49207 4.56847 4.60516 4.63274 4.68559 4.73608
4.76494 4.77439 4.80106 4.88748 4.93777 5.01228 5.05866 5.12694
5.15764 5.20010 5.20490 5.29822 5.36189 5.40629 5.44595 5.48857
5.54548 5.67515 5.80135 6.41558 6.41952 6.78864 7.04141 7.17247
7.89588 8.41494 9.21491
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.023230 B = 0.002242 C = 0.002191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1205.026171 B =12484.968341 C =12778.203868
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.134 3.866
3 C -0.166 4.166
4 N -0.341 5.341
5 C 0.109 3.891
6 C -0.118 4.118
7 C 0.608 3.392
8 O -0.578 6.578
9 N -0.602 5.602
10 C 0.106 3.894
11 C -0.114 4.114
12 C -0.052 4.052
13 C 0.126 3.874
14 C -0.111 4.111
15 C 0.179 3.821
16 N -0.608 5.608
17 C -0.258 4.258
18 H 0.069 0.931
19 C -0.055 4.055
20 N -0.938 5.938
21 Si 0.967 3.033
22 H -0.288 1.288
23 H -0.294 1.294
24 H -0.267 1.267
25 C 0.137 3.863
26 C -0.104 4.104
27 N -0.217 5.217
28 N -0.086 5.086
29 H 0.063 0.937
30 H 0.113 0.887
31 H 0.053 0.947
32 H 0.126 0.874
33 H 0.064 0.936
34 H 0.115 0.885
35 H 0.074 0.926
36 H 0.227 0.773
37 H 0.066 0.934
38 H 0.101 0.899
39 H 0.091 0.909
40 H 0.102 0.898
41 H 0.063 0.937
42 H 0.043 0.957
43 H 0.057 0.943
44 H 0.065 0.935
45 H 0.051 0.949
46 H -0.011 1.011
47 H 0.248 0.752
48 H 0.055 0.945
49 H 0.007 0.993
50 H 0.071 0.929
51 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.782 6.745 -28.893 29.723
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.035 3.965
3 C -0.224 4.224
4 N -0.127 5.127
5 C -0.049 4.049
6 C -0.258 4.258
7 C 0.396 3.604
8 O -0.458 6.458
9 N -0.333 5.333
10 C -0.016 4.016
11 C -0.151 4.151
12 C -0.053 4.053
13 C 0.003 3.997
14 C -0.150 4.150
15 C 0.053 3.947
16 N -0.331 5.331
17 C -0.388 4.388
18 H 0.086 0.914
19 C -0.250 4.250
20 N -0.584 5.584
21 Si 0.795 3.205
22 H -0.215 1.215
23 H -0.221 1.221
24 H -0.191 1.191
25 C 0.012 3.988
26 C -0.143 4.143
27 N -0.090 5.090
28 N -0.066 5.066
29 H 0.082 0.918
30 H 0.131 0.869
31 H 0.072 0.928
32 H 0.143 0.857
33 H 0.083 0.917
34 H 0.133 0.867
35 H 0.093 0.907
36 H 0.243 0.757
37 H 0.084 0.916
38 H 0.119 0.881
39 H 0.110 0.890
40 H 0.120 0.880
41 H 0.082 0.918
42 H 0.061 0.939
43 H 0.076 0.924
44 H 0.083 0.917
45 H 0.070 0.930
46 H 0.007 0.993
47 H 0.057 0.943
48 H 0.074 0.926
49 H 0.025 0.975
50 H 0.090 0.910
51 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges 1.681 6.045 -29.387 30.049
hybrid contribution -0.791 0.633 1.859 2.118
sum 0.889 6.678 -27.527 28.339
Atomic orbital electron populations
1.22275 0.91559 1.03248 1.05095 1.22129 0.96350 0.94364 0.83629
1.22304 1.02305 0.91909 1.05883 1.51087 1.42988 1.08728 1.09849
1.23558 0.95573 1.01490 0.84270 1.21209 1.16726 0.91878 0.95974
1.16765 0.76779 0.82693 0.84203 1.90782 1.56674 1.27719 1.70620
1.48432 1.63192 1.10609 1.11064 1.22676 0.99366 0.80471 0.99101
1.22930 0.98973 1.01549 0.91689 1.20880 0.96010 0.92549 0.95830
1.21952 0.99197 0.98313 0.80212 1.21863 0.97287 0.99133 0.96724
1.20589 0.88994 0.95987 0.89149 1.44310 1.13402 1.62724 1.12698
1.19539 0.93661 1.33414 0.92182 0.91360 1.25822 0.96988 1.01320
1.00882 1.70215 1.01895 1.43331 1.42995 0.85271 0.76816 0.79070
0.79355 1.21459 1.22053 1.19148 1.21120 0.89886 0.93065 0.94749
1.21782 0.95763 1.01948 0.94828 1.74651 1.11824 1.23508 0.99027
1.81890 1.18968 0.93456 1.12237 0.91775 0.86862 0.92769 0.85652
0.91687 0.86693 0.90724 0.75705 0.91566 0.88062 0.89049 0.88001
0.91821 0.93905 0.92401 0.91654 0.93036 0.99308 0.94288 0.92611
0.97515 0.91008 0.89958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.92 9.52 71.98 0.69 -0.23 16
2 C 0.13 0.96 3.96 44.99 0.18 1.13 16
3 C -0.17 -0.48 8.85 71.98 0.64 0.16 16
4 N -0.34 -5.56 3.54 -326.55 -1.16 -6.71 16
5 C 0.11 2.09 10.40 83.85 0.87 2.96 16
6 C -0.12 -3.17 6.84 40.82 0.28 -2.89 16
7 C 0.61 20.23 7.85 86.69 0.68 20.91 16
8 O -0.58 -22.49 17.19 -4.02 -0.07 -22.56 16
9 N -0.60 -19.43 3.33 -815.61 -2.72 -22.15 16
10 C 0.11 2.79 5.82 86.96 0.51 3.30 16
11 C -0.11 -2.74 6.00 31.88 0.19 -2.55 16
12 C -0.05 -1.66 0.53 -51.91 -0.03 -1.69 16
13 C 0.13 4.48 5.05 86.48 0.44 4.92 16
14 C -0.11 -4.20 4.78 30.46 0.15 -4.06 16
15 C 0.18 8.91 5.03 86.40 0.43 9.35 16
16 N -0.61 -31.15 2.98 -698.57 -2.08 -33.23 16
17 C -0.26 -14.42 9.57 84.03 0.80 -13.61 16
18 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16
19 C -0.06 -3.16 4.90 84.86 0.42 -2.75 16
20 N -0.94 -57.47 11.20 21.65 0.24 -57.23 16
21 Si 0.97 45.84 29.59 68.60 2.03 47.87 16
22 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16
23 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16
24 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16
25 C 0.14 5.77 6.24 86.40 0.54 6.31 16
26 C -0.10 -3.36 4.70 30.46 0.14 -3.21 16
27 N -0.22 -5.74 9.39 -49.99 -0.47 -6.21 16
28 N -0.09 -1.99 13.78 37.02 0.51 -1.48 16
29 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16
30 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16
31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16
32 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16
33 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16
34 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16
35 H 0.07 0.21 7.23 -2.39 -0.02 0.20 16
36 H 0.23 3.00 7.34 -2.91 -0.02 2.98 16
37 H 0.07 1.79 7.74 -2.39 -0.02 1.77 16
38 H 0.10 2.52 6.13 -2.39 -0.01 2.50 16
39 H 0.09 1.92 8.01 -2.38 -0.02 1.90 16
40 H 0.10 2.14 8.01 -2.38 -0.02 2.12 16
41 H 0.06 2.29 7.59 -2.39 -0.02 2.27 16
42 H 0.04 1.85 6.08 -2.39 -0.01 1.84 16
43 H 0.06 2.07 7.47 -2.39 -0.02 2.06 16
44 H 0.06 2.41 8.14 -2.39 -0.02 2.40 16
45 H 0.05 2.92 6.02 -2.39 -0.01 2.91 16
46 H -0.01 -0.61 6.53 -2.38 -0.02 -0.62 16
47 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16
48 H 0.06 2.28 7.93 -2.39 -0.02 2.26 16
49 H 0.01 0.30 7.48 -2.38 -0.02 0.29 16
50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16
51 H 0.08 2.21 8.10 -2.39 -0.02 2.19 16
Total: -1.00 -76.64 395.37 4.13 -72.51
By element:
Atomic # 1 Polarization: 10.23 SS G_CDS: 0.93 Total: 11.15 kcal
Atomic # 6 Polarization: 11.12 SS G_CDS: 6.92 Total: 18.04 kcal
Atomic # 7 Polarization: -121.34 SS G_CDS: -5.67 Total: -127.01 kcal
Atomic # 8 Polarization: -22.49 SS G_CDS: -0.07 Total: -22.56 kcal
Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal
Total: -76.64 4.13 -72.51 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001040899482.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 138.870 kcal
(2) G-P(sol) polarization free energy of solvation -76.641 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.228 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.361 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds