Wall clock time and date at job start Wed Apr 1 2020 05:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47036 * 2 1 4 4 C 1.53005 * 109.47151 * 240.00337 * 2 1 3 5 5 N 1.46494 * 109.47325 * 119.99947 * 2 1 3 6 6 C 1.34585 * 125.74344 * 74.97910 * 5 2 1 7 7 N 1.30880 * 107.62290 * 179.80211 * 6 5 2 8 8 C 1.34550 * 107.26685 * 0.37447 * 7 6 5 9 9 C 1.47871 * 126.04707 * 179.89154 * 8 7 6 10 10 O 1.21549 * 119.99659 * 179.68458 * 9 8 7 11 11 N 1.34770 * 119.99750 * 359.68805 * 9 8 7 12 12 C 1.48253 * 127.73939 * 359.97438 * 11 9 8 13 13 C 1.54712 * 104.67015 * 141.19312 * 12 11 9 14 14 C 1.53034 * 104.47871 * 23.66255 * 13 12 11 15 15 C 1.53888 * 111.37161 * 121.01204 * 14 13 12 16 16 C 1.55141 * 101.44981 * 155.00144 * 15 14 13 17 17 N 1.47544 * 105.06775 * 324.20662 * 16 15 14 18 18 C 1.36934 * 125.67052 * 203.97311 * 17 16 15 19 19 H 1.08007 * 119.99661 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00452 * 0.02562 * 18 17 16 21 21 N 1.31622 * 119.99895 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00435 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47082 * 90.00075 * 22 20 18 24 24 H 1.48501 * 109.47422 * 210.00245 * 22 20 18 25 25 H 1.48503 * 109.47013 * 330.00273 * 22 20 18 26 26 C 1.47602 * 108.51853 * 23.94003 * 17 16 15 27 27 C 1.48448 * 127.73224 * 179.97438 * 11 9 8 28 28 N 1.28845 * 125.75077 * 255.02560 * 5 2 1 29 29 H 1.08999 * 109.47184 * 299.99841 * 1 2 3 30 30 H 1.08999 * 109.46931 * 59.99920 * 1 2 3 31 31 H 1.08997 * 109.46836 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47339 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46935 * 300.00208 * 3 2 1 34 34 H 1.08999 * 109.47004 * 60.00049 * 3 2 1 35 35 H 1.08998 * 109.46768 * 300.00296 * 4 2 1 36 36 H 1.09001 * 109.46912 * 60.00139 * 4 2 1 37 37 H 1.09000 * 109.46750 * 179.97438 * 4 2 1 38 38 H 1.07999 * 126.19415 * 0.04621 * 6 5 2 39 39 H 1.09000 * 110.40221 * 22.39239 * 12 11 9 40 40 H 1.09004 * 110.49604 * 260.03816 * 12 11 9 41 41 H 1.09003 * 110.42851 * 264.91740 * 13 12 11 42 42 H 1.08999 * 110.53897 * 142.46990 * 13 12 11 43 43 H 1.09002 * 111.02699 * 36.95797 * 15 14 13 44 44 H 1.08994 * 111.06323 * 273.05674 * 15 14 13 45 45 H 1.09002 * 110.34155 * 83.13698 * 16 15 14 46 46 H 1.09000 * 110.33754 * 205.28289 * 16 15 14 47 47 H 0.96998 * 120.00351 * 179.97438 * 21 20 18 48 48 H 1.08997 * 109.94166 * 238.66138 * 26 17 16 49 49 H 1.09000 * 109.96387 * 117.40978 * 26 17 16 50 50 H 1.08998 * 110.47061 * 99.70173 * 27 11 9 51 51 H 1.08997 * 110.46436 * 337.10656 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 6 2.0136 -2.0220 1.3923 7 7 2.5316 -2.2506 2.5722 8 6 2.8485 -1.0574 3.1072 9 6 3.4594 -0.8338 4.4352 10 8 3.7058 0.2965 4.8082 11 7 3.7430 -1.8833 5.2317 12 6 3.5166 -3.3216 4.9526 13 6 4.7590 -4.0345 5.5372 14 6 5.2870 -3.0709 6.6024 15 6 5.3184 -3.7328 7.9913 16 6 6.4230 -2.9067 8.7014 17 7 7.4147 -2.6090 7.6502 18 6 8.7378 -2.3239 7.8584 19 1 9.3846 -2.1186 7.0181 20 6 9.2477 -2.2989 9.1492 21 7 8.4596 -2.5496 10.1731 22 14 11.0528 -1.9107 9.4331 23 1 11.2231 -0.4454 9.6035 24 1 11.5230 -2.6094 10.6562 25 1 11.8472 -2.3689 8.2650 26 6 6.7406 -2.6711 6.3386 27 6 4.3521 -1.8580 6.5852 28 7 2.5241 -0.1256 2.2378 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 1.6517 -2.7674 0.6996 39 1 3.4499 -3.4943 3.8784 40 1 2.6106 -3.6688 5.4493 41 1 5.5081 -4.1913 4.7611 42 1 4.4767 -4.9849 5.9901 43 1 5.6016 -4.7829 7.9178 44 1 4.3604 -3.6230 8.4994 45 1 6.0065 -1.9825 9.1019 46 1 6.8805 -3.4922 9.4988 47 1 8.8160 -2.5325 11.0751 48 1 7.2233 -3.4174 5.7076 49 1 6.7764 -1.6949 5.8552 50 1 3.5832 -1.9588 7.3512 51 1 4.9185 -0.9383 6.7311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041667598.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:25 Heat of formation + Delta-G solvation = 77.093497 kcal Electronic energy + Delta-G solvation = -31273.207768 eV Core-core repulsion = 27209.996764 eV Total energy + Delta-G solvation = -4063.211004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.55331 -41.40256 -39.70393 -38.20881 -37.24110 -34.59557 -33.63382 -32.37030 -31.81981 -30.71525 -29.57318 -28.51291 -28.39108 -27.78406 -26.40959 -24.54930 -24.07524 -23.37823 -22.19643 -21.10342 -20.78972 -20.16887 -18.90776 -18.23795 -17.71557 -17.64748 -16.99491 -16.82273 -16.63661 -16.00510 -15.67597 -15.51020 -15.22459 -15.10232 -14.89759 -14.75977 -14.22602 -14.02527 -13.81939 -13.57660 -13.30054 -13.27019 -13.24479 -13.12954 -12.98250 -12.89478 -12.77274 -12.71350 -12.64726 -12.48899 -12.38481 -12.01695 -11.99417 -11.82375 -11.57689 -11.56507 -11.42682 -11.40006 -11.26629 -10.97371 -10.74105 -10.60119 -9.81541 -8.89034 -7.77869 -5.22203 0.29205 1.09885 1.11981 1.43592 1.46448 1.54903 1.80630 2.20760 2.48132 2.96646 3.23446 3.29769 3.56170 3.60665 3.66027 3.66771 3.77088 3.79647 3.86006 3.89227 4.28689 4.36113 4.40498 4.51855 4.58524 4.60059 4.63206 4.68657 4.69604 4.71744 4.78241 4.80466 4.82644 4.84603 4.89843 5.02845 5.09589 5.10442 5.12865 5.16197 5.20161 5.23418 5.35594 5.39778 5.43442 5.44917 5.67622 5.74858 5.83994 6.31761 6.36042 6.77960 7.09431 7.10848 7.76866 8.41945 9.23580 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020873 B = 0.002248 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.106777 B =12450.581396 C =12998.157241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.203 3.797 7 N -0.493 5.493 8 C 0.123 3.877 9 C 0.621 3.379 10 O -0.577 6.577 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.109 4.109 14 C -0.073 4.073 15 C -0.110 4.110 16 C 0.151 3.849 17 N -0.626 5.626 18 C -0.241 4.241 19 H 0.073 0.927 20 C -0.066 4.066 21 N -0.946 5.946 22 Si 0.980 3.020 23 H -0.291 1.291 24 H -0.287 1.287 25 H -0.270 1.270 26 C 0.149 3.851 27 C 0.131 3.869 28 N -0.276 5.276 29 H 0.044 0.956 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.110 0.890 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.054 0.946 38 H 0.275 0.725 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.072 0.928 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.092 0.908 45 H -0.019 1.019 46 H 0.075 0.925 47 H 0.248 0.752 48 H 0.033 0.967 49 H -0.004 1.004 50 H 0.094 0.906 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.441 -3.800 -27.154 35.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.077 3.923 3 C -0.208 4.208 4 C -0.213 4.213 5 N -0.083 5.083 6 C -0.091 4.091 7 N -0.219 5.219 8 C -0.155 4.155 9 C 0.407 3.593 10 O -0.454 6.454 11 N -0.333 5.333 12 C -0.022 4.022 13 C -0.147 4.147 14 C -0.074 4.074 15 C -0.148 4.148 16 C 0.026 3.974 17 N -0.353 5.353 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.259 4.259 21 N -0.596 5.596 22 Si 0.808 3.192 23 H -0.218 1.218 24 H -0.213 1.213 25 H -0.195 1.195 26 C 0.024 3.976 27 C 0.008 3.992 28 N -0.117 5.117 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.129 0.871 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.132 0.868 37 H 0.073 0.927 38 H 0.291 0.709 39 H 0.137 0.863 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.100 0.900 44 H 0.111 0.889 45 H -0.001 1.001 46 H 0.093 0.907 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.014 0.986 50 H 0.112 0.888 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.031 -2.721 -26.607 34.651 hybrid contribution 1.367 0.956 0.682 1.802 sum -20.664 -1.766 -25.925 33.200 Atomic orbital electron populations 1.22280 0.89846 1.04812 1.04303 1.21671 0.96626 0.93800 0.80235 1.22024 1.01308 0.93444 1.04010 1.22309 1.01825 1.02492 0.94700 1.48190 1.40085 1.06975 1.13046 1.27355 0.99156 0.86805 0.95762 1.71179 1.17616 1.24533 1.08569 1.23115 1.08089 0.87129 0.97188 1.16271 0.77910 0.83285 0.81807 1.90792 1.55761 1.23990 1.74879 1.48805 1.59488 1.07936 1.17110 1.23028 0.98133 0.76377 1.04613 1.22498 0.97018 0.98411 0.96794 1.21468 0.93006 0.95222 0.97706 1.22837 0.99292 0.99319 0.93400 1.21832 0.88142 0.95251 0.92155 1.45004 1.05817 1.82367 1.02072 1.19409 0.85096 1.39734 0.92776 0.90891 1.25621 1.02487 1.02626 0.95163 1.70049 1.34851 1.56741 0.97954 0.85053 0.79486 0.77251 0.77379 1.21788 1.21318 1.19470 1.21405 0.91854 0.96353 0.87977 1.22240 0.95688 0.98043 0.83193 1.74234 1.14285 1.26507 0.96675 0.93638 0.86873 0.89581 0.93364 0.87127 0.93208 0.88714 0.86803 0.92662 0.70932 0.86329 0.88902 0.90911 0.86969 0.90028 0.88916 1.00128 0.90694 0.94240 0.94940 0.98647 0.88833 0.93692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 8.72 71.98 0.63 -0.06 16 2 C 0.16 1.38 1.23 3.61 0.00 1.38 16 3 C -0.15 -1.83 8.04 71.98 0.58 -1.25 16 4 C -0.16 -0.33 8.28 71.98 0.60 0.27 16 5 N -0.29 -4.98 3.17 -311.57 -0.99 -5.96 16 6 C 0.20 2.84 11.71 180.30 2.11 4.95 16 7 N -0.49 -11.27 8.43 -193.02 -1.63 -12.90 16 8 C 0.12 3.85 7.83 137.13 1.07 4.93 16 9 C 0.62 23.82 7.92 86.80 0.69 24.50 16 10 O -0.58 -27.17 17.36 -3.87 -0.07 -27.23 16 11 N -0.60 -20.19 3.33 -812.01 -2.70 -22.89 16 12 C 0.10 2.42 6.69 86.63 0.58 3.00 16 13 C -0.11 -2.78 6.31 31.19 0.20 -2.58 16 14 C -0.07 -2.55 0.79 -51.80 -0.04 -2.59 16 15 C -0.11 -3.97 5.90 31.63 0.19 -3.78 16 16 C 0.15 7.70 5.81 86.91 0.50 8.21 16 17 N -0.63 -34.56 3.42 -692.22 -2.37 -36.92 16 18 C -0.24 -14.46 10.29 84.03 0.86 -13.59 16 19 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 21 N -0.95 -58.37 10.09 21.65 0.22 -58.15 16 22 Si 0.98 47.95 29.55 68.60 2.03 49.98 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 25 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 26 C 0.15 6.82 6.37 86.18 0.55 7.37 16 27 C 0.13 4.77 6.04 86.06 0.52 5.29 16 28 N -0.28 -8.00 11.09 -52.43 -0.58 -8.58 16 29 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.05 0.87 8.02 -2.39 -0.02 0.85 16 35 H 0.09 -0.22 7.34 -2.39 -0.02 -0.24 16 36 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 37 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.28 0.34 7.53 -2.91 -0.02 0.32 16 39 H 0.12 2.73 5.49 -2.39 -0.01 2.71 16 40 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.07 1.90 7.41 -2.39 -0.02 1.88 16 42 H 0.11 2.23 7.62 -2.39 -0.02 2.21 16 43 H 0.08 2.73 7.90 -2.39 -0.02 2.71 16 44 H 0.09 2.79 7.65 -2.39 -0.02 2.78 16 45 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 46 H 0.08 4.29 5.88 -2.39 -0.01 4.28 16 47 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 48 H 0.03 1.44 7.48 -2.39 -0.02 1.42 16 49 H 0.00 -0.22 7.63 -2.39 -0.02 -0.24 16 50 H 0.09 3.03 7.59 -2.39 -0.02 3.01 16 51 H 0.04 2.03 7.41 -2.39 -0.02 2.01 16 Total: -1.00 -88.43 399.54 4.34 -84.08 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: 0.92 Total: 6.04 kcal Atomic # 6 Polarization: 23.03 SS G_CDS: 9.51 Total: 32.54 kcal Atomic # 7 Polarization: -137.36 SS G_CDS: -8.04 Total: -145.41 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.07 Total: -27.23 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -88.43 4.34 -84.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041667598.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.175 kcal (2) G-P(sol) polarization free energy of solvation -88.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds