Wall clock time and date at job start Wed Apr 1 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47167 * 2 1 4 4 C 1.52998 * 109.47147 * 239.99884 * 2 1 3 5 5 N 1.46499 * 109.47033 * 119.99839 * 2 1 3 6 6 C 1.34590 * 125.74846 * 74.99581 * 5 2 1 7 7 N 1.30867 * 107.62594 * 179.97438 * 6 5 2 8 8 C 1.34556 * 107.27010 * 0.02562 * 7 6 5 9 9 C 1.47870 * 126.04920 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99972 * 187.66766 * 9 8 7 11 11 N 1.34771 * 119.99925 * 7.66505 * 9 8 7 12 12 C 1.46603 * 119.75556 * 186.55467 * 11 9 8 13 13 C 1.53882 * 110.71311 * 227.74623 * 12 11 9 14 14 C 1.51980 * 107.29580 * 308.18575 * 13 12 11 15 15 H 1.08995 * 111.57281 * 303.14538 * 14 13 12 16 16 C 1.53700 * 115.00027 * 175.42865 * 14 13 12 17 17 C 1.55299 * 101.81692 * 206.54894 * 16 14 13 18 18 N 1.48157 * 107.04031 * 22.44574 * 17 16 14 19 19 C 1.36943 * 126.39464 * 185.03787 * 18 17 16 20 20 H 1.07998 * 119.99663 * 172.79176 * 19 18 17 21 21 C 1.38810 * 120.00198 * 352.78520 * 19 18 17 22 22 N 1.31613 * 119.99996 * 352.59801 * 21 19 18 23 23 Si 1.86795 * 120.00004 * 172.59065 * 21 19 18 24 24 H 1.48505 * 109.46952 * 94.99381 * 23 21 19 25 25 H 1.48503 * 109.47446 * 214.99361 * 23 21 19 26 26 H 1.48504 * 109.47499 * 334.99801 * 23 21 19 27 27 C 1.45496 * 107.20596 * 5.00329 * 18 17 16 28 28 H 1.09001 * 109.56732 * 85.84369 * 27 18 17 29 29 C 1.47801 * 119.75849 * 6.55849 * 11 9 8 30 30 N 1.28852 * 125.74872 * 255.31311 * 5 2 1 31 31 H 1.09009 * 109.47055 * 300.00199 * 1 2 3 32 32 H 1.08993 * 109.46974 * 59.99765 * 1 2 3 33 33 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46659 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46784 * 300.00342 * 3 2 1 36 36 H 1.09003 * 109.46907 * 59.99819 * 3 2 1 37 37 H 1.09007 * 109.46951 * 300.00082 * 4 2 1 38 38 H 1.08999 * 109.46905 * 59.99596 * 4 2 1 39 39 H 1.08997 * 109.47367 * 180.02562 * 4 2 1 40 40 H 1.08000 * 126.18648 * 359.97438 * 6 5 2 41 41 H 1.08999 * 109.22792 * 107.43011 * 12 11 9 42 42 H 1.08994 * 109.22508 * 348.06445 * 12 11 9 43 43 H 1.09009 * 109.89253 * 188.74188 * 13 12 11 44 44 H 1.09003 * 109.95818 * 67.66903 * 13 12 11 45 45 H 1.09003 * 110.95934 * 88.42341 * 16 14 13 46 46 H 1.08991 * 110.99357 * 324.69358 * 16 14 13 47 47 H 1.08995 * 109.92093 * 263.09902 * 17 16 14 48 48 H 1.08991 * 110.08638 * 141.88646 * 17 16 14 49 49 H 0.97007 * 120.00259 * 179.97438 * 22 21 19 50 50 H 1.09001 * 110.06451 * 9.52118 * 29 11 9 51 51 H 1.09002 * 110.06479 * 247.96319 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0138 -2.0221 1.3923 7 7 2.5283 -2.2503 2.5738 8 6 2.8498 -1.0574 3.1068 9 6 3.4605 -0.8338 4.4347 10 8 3.5783 0.2962 4.8670 11 7 3.8866 -1.8828 5.1658 12 6 4.3578 -1.6701 6.5376 13 6 5.6977 -2.3902 6.7705 14 6 5.5175 -3.8336 6.3303 15 1 4.6958 -4.3148 6.8607 16 6 6.7905 -4.6931 6.3849 17 6 6.4975 -5.7647 5.2996 18 7 5.4857 -5.1891 4.3832 19 6 4.8732 -5.8331 3.3413 20 1 4.0648 -5.3529 2.8100 21 6 5.2916 -7.1029 2.9680 22 7 6.3669 -7.6288 3.5151 23 14 4.3283 -8.0653 1.6892 24 1 4.9372 -7.8571 0.3509 25 1 4.3615 -9.5106 2.0288 26 1 2.9204 -7.5932 1.6713 27 6 5.2635 -3.8121 4.7975 28 1 6.0039 -3.1653 4.3266 29 6 3.8753 -3.2391 4.5785 30 7 2.5192 -0.1252 2.2401 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7490 -1.2492 38 1 1.6766 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.6512 -2.7674 0.6999 41 1 3.6160 -2.0574 7.2361 42 1 4.4895 -0.6020 6.7104 43 1 5.9587 -2.3550 7.8283 44 1 6.4819 -1.9173 6.1793 45 1 6.9081 -5.1538 7.3658 46 1 7.6703 -4.1049 6.1245 47 1 6.1049 -6.6681 5.7661 48 1 7.4083 -5.9975 4.7481 49 1 6.6591 -8.5164 3.2545 50 1 3.6578 -3.1830 3.5119 51 1 3.1317 -3.8579 5.0809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042232709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:18 Heat of formation + Delta-G solvation = 102.117399 kcal Electronic energy + Delta-G solvation = -32315.596847 eV Core-core repulsion = 28253.470961 eV Total energy + Delta-G solvation = -4062.125886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.50126 -39.92914 -38.15076 -37.47653 -35.13346 -33.22938 -32.44114 -31.42102 -30.76565 -29.18196 -28.36583 -27.96436 -27.86105 -25.38367 -24.17201 -23.55927 -22.75761 -21.81225 -20.25201 -20.05127 -19.72553 -19.06988 -17.31005 -16.70037 -16.63988 -16.40255 -15.80115 -14.96704 -14.86819 -14.71077 -14.52895 -14.30459 -14.15085 -13.87840 -13.51129 -13.39224 -13.12154 -12.93472 -12.82169 -12.73019 -12.54665 -12.25123 -12.13934 -11.92686 -11.82210 -11.72279 -11.47554 -11.33609 -11.20515 -10.81766 -10.75333 -10.66499 -10.42314 -10.36790 -10.08887 -10.03099 -9.83463 -9.69201 -9.51678 -9.48824 -8.97623 -8.56517 -8.29943 -6.75875 -5.66073 -2.99105 1.49472 2.05542 2.17885 3.10891 3.41571 3.47036 3.49552 3.55530 3.95810 4.15496 4.21700 4.32082 4.53141 4.62874 4.75659 4.97712 5.08249 5.12390 5.15517 5.17040 5.26390 5.26926 5.30470 5.34403 5.50275 5.50992 5.66760 5.71922 5.76415 5.77891 5.86223 5.90519 6.03784 6.05627 6.17091 6.24556 6.27814 6.31869 6.33544 6.47324 6.58441 6.64974 6.75023 6.79118 7.14138 7.17842 7.56138 7.58303 7.73354 7.86953 8.05506 8.29871 8.40329 9.25041 9.89101 10.57665 11.46829 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.004152 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.418777 B = 6741.925744 C = 9331.424478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.148 4.148 4 C -0.162 4.162 5 N -0.295 5.295 6 C 0.189 3.811 7 N -0.466 5.466 8 C 0.145 3.855 9 C 0.614 3.386 10 O -0.536 6.536 11 N -0.585 5.585 12 C 0.114 3.886 13 C -0.117 4.117 14 C -0.115 4.115 15 H 0.076 0.924 16 C -0.137 4.137 17 C 0.176 3.824 18 N -0.589 5.589 19 C -0.221 4.221 20 H 0.082 0.918 21 C -0.009 4.009 22 N -0.921 5.921 23 Si 0.906 3.094 24 H -0.291 1.291 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.156 3.844 28 H 0.020 0.980 29 C 0.086 3.914 30 N -0.251 5.251 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.221 0.779 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.036 0.964 48 H 0.053 0.947 49 H 0.251 0.749 50 H 0.138 0.862 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.930 14.494 -5.399 18.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.206 4.206 4 C -0.220 4.220 5 N -0.092 5.092 6 C -0.105 4.105 7 N -0.191 5.191 8 C -0.135 4.135 9 C 0.398 3.602 10 O -0.411 6.411 11 N -0.317 5.317 12 C -0.008 4.008 13 C -0.156 4.156 14 C -0.135 4.135 15 H 0.095 0.905 16 C -0.175 4.175 17 C 0.051 3.949 18 N -0.314 5.314 19 C -0.349 4.349 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.737 3.263 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.047 3.953 28 H 0.037 0.963 29 C -0.036 4.036 30 N -0.089 5.089 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.238 0.762 41 H 0.083 0.917 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.071 0.929 49 H 0.061 0.939 50 H 0.155 0.845 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.703 15.238 -4.994 18.743 hybrid contribution -0.549 -1.029 -0.991 1.530 sum -10.252 14.209 -5.985 18.516 Atomic orbital electron populations 1.22263 0.91860 1.03698 1.03945 1.21137 0.95221 0.94272 0.80861 1.21990 1.02645 0.92331 1.03591 1.22273 1.02925 1.01295 0.95491 1.47781 1.41873 1.06272 1.13239 1.26566 1.01061 0.86228 0.96691 1.71365 1.15985 1.24789 1.06983 1.23700 1.06120 0.85632 0.98030 1.16372 0.78053 0.84551 0.81242 1.90760 1.57124 1.22391 1.70864 1.48010 1.61511 1.08295 1.13916 1.21621 0.95940 1.01809 0.81441 1.21783 0.96519 0.95960 1.01319 1.22304 0.98949 0.93790 0.98471 0.90516 1.22707 0.96370 0.98661 0.99809 1.21519 0.93118 0.92042 0.88177 1.44138 1.47358 1.06573 1.33377 1.19075 1.11606 0.97777 1.06479 0.90065 1.24775 0.97694 0.98136 0.99882 1.69955 1.24094 1.16752 1.46049 0.86181 0.79444 0.79582 0.81088 1.21877 1.21822 1.20531 1.20979 0.93850 0.88485 0.91994 0.96251 1.22738 0.98337 0.79418 1.03139 1.74234 1.13846 1.25382 0.95455 0.91312 0.89702 0.91245 0.91240 0.90440 0.90597 0.90936 0.89429 0.90980 0.76247 0.91689 0.89338 0.90864 0.91446 0.92368 0.92497 0.94524 0.92934 0.93919 0.84501 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.72 37.16 0.32 -0.62 16 2 C 0.17 1.31 1.23 -131.82 -0.16 1.15 16 3 C -0.15 -1.15 8.05 37.16 0.30 -0.85 16 4 C -0.16 -0.94 8.28 37.16 0.31 -0.63 16 5 N -0.30 -3.57 3.16 -49.83 -0.16 -3.73 16 6 C 0.19 2.39 11.71 -90.48 -1.06 1.33 16 7 N -0.47 -7.79 7.81 -12.36 -0.10 -7.88 16 8 C 0.14 2.57 7.62 -156.35 -1.19 1.38 16 9 C 0.61 11.66 7.67 -12.32 -0.09 11.56 16 10 O -0.54 -11.03 16.43 5.32 0.09 -10.95 16 11 N -0.58 -10.47 3.01 -173.84 -0.52 -10.99 16 12 C 0.11 1.75 6.36 -3.53 -0.02 1.73 16 13 C -0.12 -1.76 5.72 -26.79 -0.15 -1.91 16 14 C -0.12 -2.08 2.61 -89.51 -0.23 -2.32 16 15 H 0.08 1.41 8.13 -51.93 -0.42 0.99 16 16 C -0.14 -2.60 6.54 -25.15 -0.16 -2.77 16 17 C 0.18 4.28 5.46 -1.91 -0.01 4.26 16 18 N -0.59 -14.94 3.35 -162.91 -0.55 -15.49 16 19 C -0.22 -6.03 9.89 -15.06 -0.15 -6.18 16 20 H 0.08 2.14 7.37 -52.49 -0.39 1.76 16 21 C -0.01 -0.24 5.45 -17.43 -0.10 -0.34 16 22 N -0.92 -26.98 10.63 55.49 0.59 -26.39 16 23 Si 0.91 21.77 29.56 -169.99 -5.02 16.74 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 27 C 0.16 3.32 2.77 -67.83 -0.19 3.13 16 28 H 0.02 0.46 7.90 -51.93 -0.41 0.05 16 29 C 0.09 1.68 5.23 -3.95 -0.02 1.66 16 30 N -0.25 -4.00 11.10 32.08 0.36 -3.64 16 31 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.70 8.02 -51.93 -0.42 0.29 16 37 H 0.07 0.36 7.34 -51.93 -0.38 -0.02 16 38 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.22 1.86 7.53 -52.49 -0.40 1.46 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.09 1.34 6.92 -51.93 -0.36 0.98 16 43 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 44 H 0.07 1.06 7.97 -51.93 -0.41 0.64 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.06 1.04 8.12 -51.93 -0.42 0.61 16 47 H 0.04 0.97 7.82 -51.93 -0.41 0.56 16 48 H 0.05 1.42 7.27 -51.93 -0.38 1.04 16 49 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 50 H 0.14 2.81 3.96 -61.00 -0.24 2.57 16 51 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 LS Contribution 395.90 15.07 5.97 5.97 Total: -1.00 -34.46 395.90 -10.38 -44.84 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.42 Total: 0.95 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: -2.61 Total: 10.58 kcal Atomic # 7 Polarization: -67.75 SS G_CDS: -0.38 Total: -68.13 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.46 -10.38 -44.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042232709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.954 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds