Wall clock time and date at job start Wed Apr 1 2020 05:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47167 * 2 1 4 4 C 1.52998 * 109.47147 * 239.99884 * 2 1 3 5 5 N 1.46499 * 109.47033 * 119.99839 * 2 1 3 6 6 C 1.34590 * 125.74846 * 74.99581 * 5 2 1 7 7 N 1.30867 * 107.62594 * 179.97438 * 6 5 2 8 8 C 1.34556 * 107.27010 * 0.02562 * 7 6 5 9 9 C 1.47870 * 126.04920 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99972 * 187.66766 * 9 8 7 11 11 N 1.34771 * 119.99925 * 7.66505 * 9 8 7 12 12 C 1.46603 * 119.75556 * 186.55467 * 11 9 8 13 13 C 1.53882 * 110.71311 * 227.74623 * 12 11 9 14 14 C 1.51980 * 107.29580 * 308.18575 * 13 12 11 15 15 H 1.08995 * 111.57281 * 303.14538 * 14 13 12 16 16 C 1.53700 * 115.00027 * 175.42865 * 14 13 12 17 17 C 1.55299 * 101.81692 * 206.54894 * 16 14 13 18 18 N 1.48157 * 107.04031 * 22.44574 * 17 16 14 19 19 C 1.36943 * 126.39464 * 185.03787 * 18 17 16 20 20 H 1.07998 * 119.99663 * 172.79176 * 19 18 17 21 21 C 1.38810 * 120.00198 * 352.78520 * 19 18 17 22 22 N 1.31613 * 119.99996 * 352.59801 * 21 19 18 23 23 Si 1.86795 * 120.00004 * 172.59065 * 21 19 18 24 24 H 1.48505 * 109.46952 * 94.99381 * 23 21 19 25 25 H 1.48503 * 109.47446 * 214.99361 * 23 21 19 26 26 H 1.48504 * 109.47499 * 334.99801 * 23 21 19 27 27 C 1.45496 * 107.20596 * 5.00329 * 18 17 16 28 28 H 1.09001 * 109.56732 * 85.84369 * 27 18 17 29 29 C 1.47801 * 119.75849 * 6.55849 * 11 9 8 30 30 N 1.28852 * 125.74872 * 255.31311 * 5 2 1 31 31 H 1.09009 * 109.47055 * 300.00199 * 1 2 3 32 32 H 1.08993 * 109.46974 * 59.99765 * 1 2 3 33 33 H 1.08998 * 109.47250 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46659 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46784 * 300.00342 * 3 2 1 36 36 H 1.09003 * 109.46907 * 59.99819 * 3 2 1 37 37 H 1.09007 * 109.46951 * 300.00082 * 4 2 1 38 38 H 1.08999 * 109.46905 * 59.99596 * 4 2 1 39 39 H 1.08997 * 109.47367 * 180.02562 * 4 2 1 40 40 H 1.08000 * 126.18648 * 359.97438 * 6 5 2 41 41 H 1.08999 * 109.22792 * 107.43011 * 12 11 9 42 42 H 1.08994 * 109.22508 * 348.06445 * 12 11 9 43 43 H 1.09009 * 109.89253 * 188.74188 * 13 12 11 44 44 H 1.09003 * 109.95818 * 67.66903 * 13 12 11 45 45 H 1.09003 * 110.95934 * 88.42341 * 16 14 13 46 46 H 1.08991 * 110.99357 * 324.69358 * 16 14 13 47 47 H 1.08995 * 109.92093 * 263.09902 * 17 16 14 48 48 H 1.08991 * 110.08638 * 141.88646 * 17 16 14 49 49 H 0.97007 * 120.00259 * 179.97438 * 22 21 19 50 50 H 1.09001 * 110.06451 * 9.52118 * 29 11 9 51 51 H 1.09002 * 110.06479 * 247.96319 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0138 -2.0221 1.3923 7 7 2.5283 -2.2503 2.5738 8 6 2.8498 -1.0574 3.1068 9 6 3.4605 -0.8338 4.4347 10 8 3.5783 0.2962 4.8670 11 7 3.8866 -1.8828 5.1658 12 6 4.3578 -1.6701 6.5376 13 6 5.6977 -2.3902 6.7705 14 6 5.5175 -3.8336 6.3303 15 1 4.6958 -4.3148 6.8607 16 6 6.7905 -4.6931 6.3849 17 6 6.4975 -5.7647 5.2996 18 7 5.4857 -5.1891 4.3832 19 6 4.8732 -5.8331 3.3413 20 1 4.0648 -5.3529 2.8100 21 6 5.2916 -7.1029 2.9680 22 7 6.3669 -7.6288 3.5151 23 14 4.3283 -8.0653 1.6892 24 1 4.9372 -7.8571 0.3509 25 1 4.3615 -9.5106 2.0288 26 1 2.9204 -7.5932 1.6713 27 6 5.2635 -3.8121 4.7975 28 1 6.0039 -3.1653 4.3266 29 6 3.8753 -3.2391 4.5785 30 7 2.5192 -0.1252 2.2401 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7490 -1.2492 38 1 1.6766 -0.2075 -2.1392 39 1 3.1300 -0.7217 -1.2490 40 1 1.6512 -2.7674 0.6999 41 1 3.6160 -2.0574 7.2361 42 1 4.4895 -0.6020 6.7104 43 1 5.9587 -2.3550 7.8283 44 1 6.4819 -1.9173 6.1793 45 1 6.9081 -5.1538 7.3658 46 1 7.6703 -4.1049 6.1245 47 1 6.1049 -6.6681 5.7661 48 1 7.4083 -5.9975 4.7481 49 1 6.6591 -8.5164 3.2545 50 1 3.6578 -3.1830 3.5119 51 1 3.1317 -3.8579 5.0809 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042232709.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:17 Heat of formation + Delta-G solvation = 82.111735 kcal Electronic energy + Delta-G solvation = -32316.464357 eV Core-core repulsion = 28253.470961 eV Total energy + Delta-G solvation = -4062.993397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.58852 -41.39519 -39.70409 -38.24976 -36.75224 -34.81528 -33.74859 -32.97399 -31.97950 -30.80894 -30.08946 -28.48905 -28.41127 -26.88001 -25.94195 -24.89074 -23.94410 -23.15459 -21.76352 -21.39854 -21.09578 -20.43220 -18.58282 -18.37977 -17.75512 -17.57994 -17.11687 -16.74308 -16.28289 -15.96105 -15.73542 -15.62576 -15.21465 -15.08691 -14.88863 -14.69825 -14.66410 -13.97460 -13.77619 -13.70423 -13.52887 -13.30014 -13.23519 -13.09976 -13.07346 -12.88488 -12.77540 -12.69055 -12.47192 -12.40864 -12.10307 -12.01074 -11.96743 -11.85093 -11.57864 -11.49913 -11.45569 -11.38221 -11.26521 -10.67668 -10.58584 -10.39421 -9.73950 -8.82792 -7.77928 -5.13522 0.28109 1.04904 1.15607 1.49345 1.51786 1.61410 1.82731 2.20138 2.56087 2.92629 3.21625 3.40793 3.54847 3.64006 3.66517 3.76513 3.81948 3.90548 3.96589 4.04209 4.31769 4.34490 4.40034 4.51869 4.55866 4.58440 4.60132 4.64567 4.67764 4.75969 4.77441 4.79443 4.83030 4.87864 4.94398 5.02996 5.10151 5.12900 5.14590 5.17026 5.20637 5.24147 5.39568 5.49664 5.57162 5.59632 5.71547 5.79390 5.82298 6.13630 6.25957 6.79925 7.09868 7.14231 7.83843 8.52677 9.34122 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009302 B = 0.004152 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.418777 B = 6741.925744 C = 9331.424478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.155 3.845 3 C -0.147 4.147 4 C -0.159 4.159 5 N -0.283 5.283 6 C 0.196 3.804 7 N -0.499 5.499 8 C 0.113 3.887 9 C 0.609 3.391 10 O -0.561 6.561 11 N -0.583 5.583 12 C 0.109 3.891 13 C -0.105 4.105 14 C -0.101 4.101 15 H 0.079 0.921 16 C -0.122 4.122 17 C 0.180 3.820 18 N -0.608 5.608 19 C -0.227 4.227 20 H 0.087 0.913 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.972 3.028 24 H -0.289 1.289 25 H -0.299 1.299 26 H -0.261 1.261 27 C 0.149 3.851 28 H -0.001 1.001 29 C 0.100 3.900 30 N -0.264 5.264 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.054 0.946 40 H 0.262 0.738 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.112 0.888 44 H 0.059 0.941 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.007 0.993 48 H 0.014 0.986 49 H 0.244 0.756 50 H 0.131 0.869 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 15.360 -6.414 20.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.075 3.925 3 C -0.204 4.204 4 C -0.216 4.216 5 N -0.080 5.080 6 C -0.098 4.098 7 N -0.225 5.225 8 C -0.165 4.165 9 C 0.394 3.606 10 O -0.438 6.438 11 N -0.315 5.315 12 C -0.013 4.013 13 C -0.144 4.144 14 C -0.121 4.121 15 H 0.097 0.903 16 C -0.160 4.160 17 C 0.056 3.944 18 N -0.332 5.332 19 C -0.356 4.356 20 H 0.104 0.896 21 C -0.260 4.260 22 N -0.603 5.603 23 Si 0.801 3.199 24 H -0.216 1.216 25 H -0.226 1.226 26 H -0.185 1.185 27 C 0.041 3.959 28 H 0.016 0.984 29 C -0.023 4.023 30 N -0.104 5.104 31 H 0.069 0.931 32 H 0.134 0.866 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.136 0.864 39 H 0.073 0.927 40 H 0.278 0.722 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.026 0.974 48 H 0.033 0.967 49 H 0.053 0.947 50 H 0.148 0.852 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.616 16.143 -6.008 20.776 hybrid contribution 0.013 -1.216 -0.798 1.454 sum -11.602 14.927 -6.806 20.094 Atomic orbital electron populations 1.22280 0.89859 1.04515 1.04574 1.21702 0.96681 0.94133 0.79960 1.22012 1.01393 0.92708 1.04314 1.22323 1.01842 1.02249 0.95228 1.48232 1.40173 1.06468 1.13141 1.27241 0.99504 0.87071 0.95974 1.71210 1.17458 1.24928 1.08897 1.23546 1.08098 0.86535 0.98323 1.16615 0.77810 0.84334 0.81810 1.90725 1.58359 1.23060 1.71670 1.48038 1.61346 1.07356 1.14766 1.21851 0.96654 1.02308 0.80439 1.21738 0.96091 0.93083 1.03445 1.22233 0.98328 0.95761 0.95737 0.90258 1.22589 0.97156 0.97201 0.99075 1.21326 0.91124 0.92993 0.89002 1.44413 1.47396 1.08184 1.33248 1.19436 1.11406 0.97987 1.06780 0.89562 1.25619 0.98793 0.99269 1.02348 1.70180 1.25762 1.16630 1.47755 0.85144 0.78966 0.77415 0.78410 1.21596 1.22564 1.18550 1.21078 0.94358 0.86145 0.94316 0.98403 1.22446 0.96743 0.79976 1.03102 1.74164 1.14051 1.25876 0.96327 0.93138 0.86588 0.90347 0.93182 0.86955 0.92616 0.89647 0.86394 0.92722 0.72246 0.89660 0.88944 0.87015 0.92179 0.89593 0.91583 0.97448 0.96733 0.94681 0.85203 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.72 71.98 0.63 -0.75 16 2 C 0.16 2.10 1.23 3.61 0.00 2.10 16 3 C -0.15 -2.09 8.05 71.98 0.58 -1.52 16 4 C -0.16 -1.35 8.28 71.98 0.60 -0.75 16 5 N -0.28 -6.60 3.16 -311.58 -0.99 -7.58 16 6 C 0.20 4.68 11.71 180.30 2.11 6.79 16 7 N -0.50 -16.63 7.81 -193.02 -1.51 -18.14 16 8 C 0.11 4.10 7.62 137.12 1.05 5.14 16 9 C 0.61 23.51 7.67 86.79 0.67 24.18 16 10 O -0.56 -23.46 16.43 -3.88 -0.06 -23.52 16 11 N -0.58 -20.81 3.01 -822.19 -2.47 -23.28 16 12 C 0.11 3.16 6.36 86.66 0.55 3.71 16 13 C -0.11 -2.91 5.72 30.56 0.17 -2.73 16 14 C -0.10 -3.51 2.61 -10.07 -0.03 -3.54 16 15 H 0.08 2.76 8.13 -2.39 -0.02 2.74 16 16 C -0.12 -4.52 6.54 31.62 0.21 -4.31 16 17 C 0.18 9.05 5.46 86.85 0.47 9.52 16 18 N -0.61 -31.56 3.35 -669.34 -2.24 -33.80 16 19 C -0.23 -12.62 9.89 84.03 0.83 -11.79 16 20 H 0.09 4.59 7.37 -2.91 -0.02 4.57 16 21 C -0.07 -3.85 5.45 84.86 0.46 -3.39 16 22 N -0.95 -57.87 10.63 21.65 0.23 -57.64 16 23 Si 0.97 45.15 29.56 68.60 2.03 47.18 16 24 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 27 C 0.15 6.41 2.77 45.60 0.13 6.54 16 28 H 0.00 -0.07 7.90 -2.39 -0.02 -0.09 16 29 C 0.10 3.94 5.23 85.73 0.45 4.39 16 30 N -0.26 -8.50 11.10 -52.43 -0.58 -9.09 16 31 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.02 8.02 -2.39 -0.02 1.00 16 37 H 0.08 0.53 7.34 -2.38 -0.02 0.51 16 38 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.26 3.61 7.53 -2.91 -0.02 3.58 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.09 2.67 6.92 -2.39 -0.02 2.66 16 43 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 44 H 0.06 1.78 7.97 -2.39 -0.02 1.76 16 45 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 46 H 0.07 2.33 8.12 -2.39 -0.02 2.31 16 47 H 0.01 0.40 7.82 -2.39 -0.02 0.38 16 48 H 0.01 0.82 7.27 -2.39 -0.02 0.81 16 49 H 0.24 14.44 8.31 -92.70 -0.77 13.67 16 50 H 0.13 5.43 3.96 -20.30 -0.08 5.35 16 51 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -79.77 395.90 4.13 -75.64 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.85 Total: 16.64 kcal Atomic # 6 Polarization: 24.72 SS G_CDS: 8.88 Total: 33.60 kcal Atomic # 7 Polarization: -141.97 SS G_CDS: -7.56 Total: -149.53 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.06 Total: -23.52 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -79.77 4.13 -75.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042232709.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.748 kcal (2) G-P(sol) polarization free energy of solvation -79.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds