Wall clock time and date at job start Wed Apr 1 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.53005 * 109.47077 * 240.00092 * 2 1 3 5 5 N 1.46503 * 109.46915 * 120.00451 * 2 1 3 6 6 C 1.34581 * 125.75241 * 75.00023 * 5 2 1 7 7 N 1.30866 * 107.62303 * 180.26316 * 6 5 2 8 8 C 1.34549 * 107.27320 * 359.64048 * 7 6 5 9 9 C 1.47872 * 126.05054 * 180.11853 * 8 7 6 10 10 O 1.21547 * 120.00055 * 188.19085 * 9 8 7 11 11 N 1.34782 * 119.99767 * 8.18896 * 9 8 7 12 12 C 1.46803 * 119.57685 * 7.34138 * 11 9 8 13 13 C 1.53914 * 107.35271 * 127.89867 * 12 11 9 14 14 C 1.52734 * 108.35444 * 58.31277 * 13 12 11 15 15 C 1.53011 * 110.79632 * 296.10218 * 14 13 12 16 16 H 1.08998 * 111.38824 * 291.23368 * 15 14 13 17 17 C 1.45115 * 119.57488 * 187.61610 * 11 9 8 18 18 H 1.09003 * 109.97216 * 348.05904 * 17 11 9 19 19 C 1.54420 * 111.60761 * 111.34314 * 17 11 9 20 20 C 1.54568 * 102.44807 * 156.57702 * 19 17 11 21 21 N 1.47119 * 107.25381 * 338.33137 * 20 19 17 22 22 C 1.36939 * 125.76981 * 177.36295 * 21 20 19 23 23 H 1.07995 * 120.00146 * 187.78896 * 22 21 20 24 24 C 1.38817 * 119.99690 * 7.78964 * 22 21 20 25 25 N 1.31621 * 120.00281 * 352.52192 * 24 22 21 26 26 Si 1.86805 * 119.99874 * 172.52224 * 24 22 21 27 27 H 1.48496 * 109.47157 * 94.97327 * 26 24 22 28 28 H 1.48504 * 109.46908 * 214.97371 * 26 24 22 29 29 H 1.48501 * 109.46940 * 334.97391 * 26 24 22 30 30 N 1.28849 * 125.74439 * 255.03844 * 5 2 1 31 31 H 1.09000 * 109.47332 * 300.00067 * 1 2 3 32 32 H 1.09009 * 109.46714 * 59.99875 * 1 2 3 33 33 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47055 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46931 * 300.00103 * 3 2 1 36 36 H 1.09000 * 109.46962 * 59.99706 * 3 2 1 37 37 H 1.08999 * 109.47231 * 299.99722 * 4 2 1 38 38 H 1.08996 * 109.47099 * 60.00638 * 4 2 1 39 39 H 1.09004 * 109.46895 * 180.02562 * 4 2 1 40 40 H 1.08003 * 126.18229 * 359.97438 * 6 5 2 41 41 H 1.08996 * 109.83165 * 247.47758 * 12 11 9 42 42 H 1.09007 * 109.83101 * 8.43249 * 12 11 9 43 43 H 1.09008 * 109.78568 * 298.59302 * 13 12 11 44 44 H 1.09001 * 109.75176 * 178.01608 * 13 12 11 45 45 H 1.08993 * 109.21044 * 175.76197 * 14 13 12 46 46 H 1.09003 * 109.17563 * 56.41873 * 14 13 12 47 47 H 1.09000 * 110.81526 * 274.81175 * 19 17 11 48 48 H 1.08998 * 110.81104 * 38.33809 * 19 17 11 49 49 H 1.08999 * 109.88632 * 218.92012 * 20 19 17 50 50 H 1.08997 * 110.01748 * 97.81865 * 20 19 17 51 51 H 0.97001 * 120.00157 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0222 1.3922 7 7 2.5225 -2.2500 2.5762 8 6 2.8482 -1.0574 3.1073 9 6 3.4578 -0.8338 4.4359 10 8 3.5710 0.2958 4.8702 11 7 3.8878 -1.8825 5.1652 12 6 3.8966 -3.2243 4.5697 13 6 5.3072 -3.8063 4.7702 14 6 5.6092 -3.8304 6.2672 15 6 5.6490 -2.4107 6.8363 16 1 6.5115 -1.8575 6.4647 17 6 4.3305 -1.6716 6.5310 18 1 4.4476 -0.6053 6.7240 19 6 3.3583 -2.3074 7.5484 20 6 4.2603 -2.5144 8.7865 21 7 5.6532 -2.5331 8.3135 22 6 6.7657 -2.6439 9.1042 23 1 7.7486 -2.5218 8.6737 24 6 6.6300 -2.9131 10.4593 25 7 5.4361 -2.9162 11.0133 26 14 8.1419 -3.2710 11.4964 27 1 8.5999 -2.0198 12.1521 28 1 7.8034 -4.2782 12.5338 29 1 9.2242 -3.7994 10.6277 30 7 2.5237 -0.1257 2.2380 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 1.6513 -2.7674 0.6996 41 1 3.1592 -3.8544 5.0670 42 1 3.6702 -3.1580 3.5054 43 1 6.0400 -3.1822 4.2585 44 1 5.3475 -4.8201 4.3718 45 1 6.5745 -4.3096 6.4306 46 1 4.8344 -4.4007 6.7796 47 1 2.5374 -1.6277 7.7767 48 1 2.9815 -3.2615 7.1799 49 1 4.0190 -3.4628 9.2666 50 1 4.1192 -1.6956 9.4920 51 1 5.3413 -3.1039 11.9603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049716684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:52 Heat of formation + Delta-G solvation = 102.658284 kcal Electronic energy + Delta-G solvation = -31888.545915 eV Core-core repulsion = 27826.443483 eV Total energy + Delta-G solvation = -4062.102432 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.71118 -40.09691 -38.01371 -37.49470 -35.16760 -32.95902 -32.23511 -32.06444 -31.12077 -28.95212 -28.14803 -28.09483 -27.99868 -25.53949 -24.19174 -23.77940 -23.04813 -21.80235 -20.55418 -20.27684 -19.88335 -18.21875 -17.39113 -16.87222 -16.78127 -16.68330 -15.98898 -14.99772 -14.94305 -14.69112 -14.65883 -14.32679 -14.13830 -13.79308 -13.72783 -13.27544 -13.20088 -13.04029 -12.90420 -12.75379 -12.41686 -12.38719 -12.29299 -11.96638 -11.87130 -11.81077 -11.53362 -11.31284 -11.02449 -10.86460 -10.71094 -10.65693 -10.60287 -10.48367 -10.08432 -10.04486 -9.91694 -9.68193 -9.59828 -9.52168 -9.36255 -8.52957 -8.13581 -6.77484 -5.66197 -2.98517 1.34977 1.87736 1.97482 3.09584 3.44870 3.45882 3.50398 3.52351 3.78875 3.96693 4.05140 4.15742 4.43140 4.54833 4.60364 4.79555 4.92367 4.98282 5.03814 5.12226 5.21280 5.24736 5.32751 5.43084 5.44694 5.50974 5.55478 5.61659 5.66549 5.73741 5.78413 5.83485 5.98293 6.01912 6.18815 6.24114 6.30092 6.31337 6.43394 6.48200 6.58701 6.63041 6.73595 6.88074 7.10990 7.18624 7.60119 7.66190 7.70377 7.88772 7.91460 8.30028 8.40162 9.26962 9.86937 10.54393 11.45764 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.002357 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.354640 B =11875.280058 C =12114.605310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.294 5.294 6 C 0.184 3.816 7 N -0.478 5.478 8 C 0.151 3.849 9 C 0.606 3.394 10 O -0.524 6.524 11 N -0.570 5.570 12 C 0.083 3.917 13 C -0.132 4.132 14 C -0.129 4.129 15 C 0.158 3.842 16 H 0.059 0.941 17 C 0.130 3.870 18 H 0.102 0.898 19 C -0.151 4.151 20 C 0.181 3.819 21 N -0.598 5.598 22 C -0.225 4.225 23 H 0.077 0.923 24 C -0.007 4.007 25 N -0.919 5.919 26 Si 0.909 3.091 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.281 1.281 30 N -0.248 5.248 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.131 0.869 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.046 0.954 50 H 0.046 0.954 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 1.327 -28.522 30.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.090 5.090 6 C -0.110 4.110 7 N -0.204 5.204 8 C -0.129 4.129 9 C 0.389 3.611 10 O -0.398 6.398 11 N -0.301 5.301 12 C -0.040 4.040 13 C -0.171 4.171 14 C -0.169 4.169 15 C 0.049 3.951 16 H 0.077 0.923 17 C 0.026 3.974 18 H 0.120 0.880 19 C -0.190 4.190 20 C 0.056 3.944 21 N -0.322 5.322 22 C -0.353 4.353 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.566 5.566 26 Si 0.739 3.261 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.207 1.207 30 N -0.086 5.086 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.237 0.763 41 H 0.083 0.917 42 H 0.148 0.852 43 H 0.077 0.923 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.064 0.936 50 H 0.064 0.936 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -11.183 2.280 -27.714 29.972 hybrid contribution 0.551 -0.578 0.382 0.885 sum -10.632 1.701 -27.332 29.377 Atomic orbital electron populations 1.22268 0.91743 1.03633 1.04164 1.21161 0.95303 0.94385 0.80683 1.22000 1.02645 0.92236 1.03801 1.22260 1.02752 1.01131 0.95651 1.47771 1.41635 1.06199 1.13407 1.26476 1.01471 0.86477 0.96605 1.71203 1.16989 1.25350 1.06843 1.23860 1.05603 0.85381 0.98010 1.16449 0.78485 0.84950 0.81192 1.90808 1.56197 1.22388 1.70387 1.47341 1.61806 1.07681 1.13319 1.22800 0.97037 0.82003 1.02117 1.22016 0.96497 1.00331 0.98286 1.22109 1.01939 0.99775 0.93108 1.21326 0.94171 0.93200 0.86366 0.92287 1.21871 0.95495 1.01705 0.78363 0.87971 1.23119 0.98292 0.99771 0.97839 1.21176 0.81774 1.00955 0.90533 1.44698 1.02603 1.86098 0.98822 1.19028 0.85256 1.41267 0.89775 0.90477 1.24817 0.96727 1.01969 0.96771 1.69976 1.20447 1.55141 1.11077 0.86148 0.82052 0.77755 0.80121 1.21745 1.21716 1.20675 1.74312 1.13518 1.25367 0.95430 0.91178 0.89612 0.91330 0.91216 0.90348 0.90456 0.91110 0.89346 0.91091 0.76337 0.91662 0.85203 0.92294 0.91507 0.92291 0.91880 0.92071 0.92001 0.93557 0.93593 0.93795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 8.72 37.16 0.32 -0.32 16 2 C 0.17 0.92 1.23 -131.82 -0.16 0.76 16 3 C -0.15 -0.92 8.04 37.16 0.30 -0.62 16 4 C -0.16 -0.46 8.28 37.16 0.31 -0.15 16 5 N -0.29 -2.77 3.17 -49.83 -0.16 -2.93 16 6 C 0.18 1.59 11.71 -90.49 -1.06 0.53 16 7 N -0.48 -5.99 7.83 -12.37 -0.10 -6.09 16 8 C 0.15 2.35 7.60 -156.36 -1.19 1.16 16 9 C 0.61 11.28 7.65 -12.31 -0.09 11.19 16 10 O -0.52 -11.43 16.42 5.32 0.09 -11.34 16 11 N -0.57 -10.14 2.73 -165.84 -0.45 -10.60 16 12 C 0.08 1.24 5.77 -3.40 -0.02 1.22 16 13 C -0.13 -1.99 6.12 -26.39 -0.16 -2.15 16 14 C -0.13 -2.43 5.10 -26.86 -0.14 -2.57 16 15 C 0.16 3.41 3.60 -66.35 -0.24 3.17 16 16 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.13 2.64 3.13 -67.30 -0.21 2.43 16 18 H 0.10 2.30 6.93 -51.93 -0.36 1.94 16 19 C -0.15 -3.09 6.08 -25.16 -0.15 -3.24 16 20 C 0.18 4.52 5.20 -2.88 -0.01 4.51 16 21 N -0.60 -15.46 2.91 -162.19 -0.47 -15.94 16 22 C -0.22 -6.34 10.27 -15.06 -0.15 -6.50 16 23 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 24 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 25 N -0.92 -27.41 10.40 55.49 0.58 -26.83 16 26 Si 0.91 22.49 29.56 -169.99 -5.02 17.46 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 30 N -0.25 -3.50 11.10 32.07 0.36 -3.14 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 33 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.63 8.02 -51.93 -0.42 0.22 16 37 H 0.07 0.11 7.34 -51.93 -0.38 -0.27 16 38 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.22 0.80 7.53 -52.48 -0.40 0.40 16 41 H 0.07 0.97 7.51 -51.93 -0.39 0.58 16 42 H 0.13 1.80 4.14 -62.34 -0.26 1.54 16 43 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.06 1.26 7.12 -51.93 -0.37 0.89 16 47 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.06 1.19 6.78 -51.93 -0.35 0.83 16 49 H 0.05 1.26 7.40 -51.93 -0.38 0.88 16 50 H 0.05 1.27 7.54 -51.93 -0.39 0.88 16 51 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -35.18 393.57 -10.33 -45.51 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.32 Total: -1.17 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -2.76 Total: 9.13 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.25 Total: -65.53 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.18 -10.33 -45.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049716684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.170 kcal (2) G-P(sol) polarization free energy of solvation -35.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds