Wall clock time and date at job start Wed Apr 1 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47341 * 2 1 4 4 C 1.53005 * 109.47077 * 240.00092 * 2 1 3 5 5 N 1.46503 * 109.46915 * 120.00451 * 2 1 3 6 6 C 1.34581 * 125.75241 * 75.00023 * 5 2 1 7 7 N 1.30866 * 107.62303 * 180.26316 * 6 5 2 8 8 C 1.34549 * 107.27320 * 359.64048 * 7 6 5 9 9 C 1.47872 * 126.05054 * 180.11853 * 8 7 6 10 10 O 1.21547 * 120.00055 * 188.19085 * 9 8 7 11 11 N 1.34782 * 119.99767 * 8.18896 * 9 8 7 12 12 C 1.46803 * 119.57685 * 7.34138 * 11 9 8 13 13 C 1.53914 * 107.35271 * 127.89867 * 12 11 9 14 14 C 1.52734 * 108.35444 * 58.31277 * 13 12 11 15 15 C 1.53011 * 110.79632 * 296.10218 * 14 13 12 16 16 H 1.08998 * 111.38824 * 291.23368 * 15 14 13 17 17 C 1.45115 * 119.57488 * 187.61610 * 11 9 8 18 18 H 1.09003 * 109.97216 * 348.05904 * 17 11 9 19 19 C 1.54420 * 111.60761 * 111.34314 * 17 11 9 20 20 C 1.54568 * 102.44807 * 156.57702 * 19 17 11 21 21 N 1.47119 * 107.25381 * 338.33137 * 20 19 17 22 22 C 1.36939 * 125.76981 * 177.36295 * 21 20 19 23 23 H 1.07995 * 120.00146 * 187.78896 * 22 21 20 24 24 C 1.38817 * 119.99690 * 7.78964 * 22 21 20 25 25 N 1.31621 * 120.00281 * 352.52192 * 24 22 21 26 26 Si 1.86805 * 119.99874 * 172.52224 * 24 22 21 27 27 H 1.48496 * 109.47157 * 94.97327 * 26 24 22 28 28 H 1.48504 * 109.46908 * 214.97371 * 26 24 22 29 29 H 1.48501 * 109.46940 * 334.97391 * 26 24 22 30 30 N 1.28849 * 125.74439 * 255.03844 * 5 2 1 31 31 H 1.09000 * 109.47332 * 300.00067 * 1 2 3 32 32 H 1.09009 * 109.46714 * 59.99875 * 1 2 3 33 33 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47055 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46931 * 300.00103 * 3 2 1 36 36 H 1.09000 * 109.46962 * 59.99706 * 3 2 1 37 37 H 1.08999 * 109.47231 * 299.99722 * 4 2 1 38 38 H 1.08996 * 109.47099 * 60.00638 * 4 2 1 39 39 H 1.09004 * 109.46895 * 180.02562 * 4 2 1 40 40 H 1.08003 * 126.18229 * 359.97438 * 6 5 2 41 41 H 1.08996 * 109.83165 * 247.47758 * 12 11 9 42 42 H 1.09007 * 109.83101 * 8.43249 * 12 11 9 43 43 H 1.09008 * 109.78568 * 298.59302 * 13 12 11 44 44 H 1.09001 * 109.75176 * 178.01608 * 13 12 11 45 45 H 1.08993 * 109.21044 * 175.76197 * 14 13 12 46 46 H 1.09003 * 109.17563 * 56.41873 * 14 13 12 47 47 H 1.09000 * 110.81526 * 274.81175 * 19 17 11 48 48 H 1.08998 * 110.81104 * 38.33809 * 19 17 11 49 49 H 1.08999 * 109.88632 * 218.92012 * 20 19 17 50 50 H 1.08997 * 110.01748 * 97.81865 * 20 19 17 51 51 H 0.97001 * 120.00157 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1962 6 6 2.0138 -2.0222 1.3922 7 7 2.5225 -2.2500 2.5762 8 6 2.8482 -1.0574 3.1073 9 6 3.4578 -0.8338 4.4359 10 8 3.5710 0.2958 4.8702 11 7 3.8878 -1.8825 5.1652 12 6 3.8966 -3.2243 4.5697 13 6 5.3072 -3.8063 4.7702 14 6 5.6092 -3.8304 6.2672 15 6 5.6490 -2.4107 6.8363 16 1 6.5115 -1.8575 6.4647 17 6 4.3305 -1.6716 6.5310 18 1 4.4476 -0.6053 6.7240 19 6 3.3583 -2.3074 7.5484 20 6 4.2603 -2.5144 8.7865 21 7 5.6532 -2.5331 8.3135 22 6 6.7657 -2.6439 9.1042 23 1 7.7486 -2.5218 8.6737 24 6 6.6300 -2.9131 10.4593 25 7 5.4361 -2.9162 11.0133 26 14 8.1419 -3.2710 11.4964 27 1 8.5999 -2.0198 12.1521 28 1 7.8034 -4.2782 12.5338 29 1 9.2242 -3.7994 10.6277 30 7 2.5237 -0.1257 2.2380 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1301 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 1.6513 -2.7674 0.6996 41 1 3.1592 -3.8544 5.0670 42 1 3.6702 -3.1580 3.5054 43 1 6.0400 -3.1822 4.2585 44 1 5.3475 -4.8201 4.3718 45 1 6.5745 -4.3096 6.4306 46 1 4.8344 -4.4007 6.7796 47 1 2.5374 -1.6277 7.7767 48 1 2.9815 -3.2615 7.1799 49 1 4.0190 -3.4628 9.2666 50 1 4.1192 -1.6956 9.4920 51 1 5.3413 -3.1039 11.9603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049716684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:51 Heat of formation + Delta-G solvation = 81.855736 kcal Electronic energy + Delta-G solvation = -31889.447981 eV Core-core repulsion = 27826.443483 eV Total energy + Delta-G solvation = -4063.004498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.57547 -41.61792 -39.47883 -38.20539 -36.81679 -34.31794 -33.81449 -33.47876 -32.08297 -30.83928 -29.77614 -28.46764 -28.36637 -27.01186 -26.01825 -25.01040 -23.95713 -23.24702 -22.02098 -21.55977 -21.07831 -19.67366 -18.85153 -18.40493 -17.86569 -17.60729 -17.13755 -16.77474 -16.19714 -16.08143 -15.89180 -15.31353 -15.05820 -15.03958 -14.95657 -14.85846 -14.30788 -14.12412 -13.91515 -13.76535 -13.47684 -13.27609 -13.20855 -13.14901 -12.99788 -12.83379 -12.73622 -12.59912 -12.40070 -12.35774 -12.30436 -12.08276 -12.01803 -11.94403 -11.74032 -11.56630 -11.43780 -11.39211 -11.22899 -10.71843 -10.63307 -10.53866 -9.65583 -8.88989 -7.85220 -5.20120 0.31196 1.09443 1.16150 1.45844 1.47501 1.57072 1.84388 2.18562 2.50035 2.96935 3.25825 3.32310 3.54085 3.68247 3.69852 3.80725 3.86387 3.88326 3.93103 4.05576 4.15017 4.24728 4.38230 4.53533 4.56076 4.60880 4.63087 4.64929 4.68020 4.72141 4.79325 4.81453 4.83431 4.85098 4.92893 5.04789 5.10129 5.14687 5.18373 5.22564 5.26574 5.34912 5.40095 5.45378 5.55850 5.58100 5.64773 5.72434 5.85739 6.17893 6.26718 6.84360 7.08561 7.11629 7.74196 8.41396 9.25836 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.002357 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.354640 B =11875.280058 C =12114.605310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.205 3.795 7 N -0.493 5.493 8 C 0.124 3.876 9 C 0.602 3.398 10 O -0.571 6.571 11 N -0.568 5.568 12 C 0.084 3.916 13 C -0.121 4.121 14 C -0.117 4.117 15 C 0.154 3.846 16 H 0.049 0.951 17 C 0.143 3.857 18 H 0.072 0.928 19 C -0.132 4.132 20 C 0.193 3.807 21 N -0.617 5.617 22 C -0.238 4.238 23 H 0.080 0.920 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.978 3.022 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.267 1.267 30 N -0.273 5.273 31 H 0.043 0.957 32 H 0.113 0.887 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.109 0.891 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.058 0.942 40 H 0.276 0.724 41 H 0.072 0.928 42 H 0.152 0.848 43 H 0.059 0.941 44 H 0.102 0.898 45 H 0.050 0.950 46 H 0.052 0.948 47 H 0.067 0.933 48 H 0.082 0.918 49 H 0.020 0.980 50 H 0.007 0.993 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 -0.648 -32.859 35.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.077 3.923 3 C -0.208 4.208 4 C -0.213 4.213 5 N -0.082 5.082 6 C -0.089 4.089 7 N -0.219 5.219 8 C -0.154 4.154 9 C 0.388 3.612 10 O -0.448 6.448 11 N -0.298 5.298 12 C -0.037 4.037 13 C -0.159 4.159 14 C -0.157 4.157 15 C 0.046 3.954 16 H 0.067 0.933 17 C 0.037 3.963 18 H 0.090 0.910 19 C -0.172 4.172 20 C 0.068 3.932 21 N -0.342 5.342 22 C -0.367 4.367 23 H 0.098 0.902 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.806 3.194 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.192 1.192 30 N -0.113 5.113 31 H 0.062 0.938 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.131 0.869 39 H 0.077 0.923 40 H 0.291 0.709 41 H 0.091 0.909 42 H 0.168 0.832 43 H 0.078 0.922 44 H 0.120 0.880 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.101 0.899 49 H 0.038 0.962 50 H 0.025 0.975 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.102 0.284 -32.123 34.329 hybrid contribution 0.770 0.137 1.563 1.748 sum -11.332 0.421 -30.560 32.596 Atomic orbital electron populations 1.22292 0.90137 1.04743 1.04239 1.21668 0.96436 0.93906 0.80285 1.22021 1.01476 0.93317 1.03941 1.22305 1.01995 1.02422 0.94561 1.48189 1.40132 1.06893 1.13007 1.27427 0.98879 0.86856 0.95712 1.70994 1.18198 1.24221 1.08533 1.23144 1.07940 0.87034 0.97302 1.16880 0.77779 0.84221 0.82335 1.90769 1.58008 1.24152 1.71869 1.47330 1.61457 1.08974 1.12076 1.23063 0.97139 0.80215 1.03276 1.21973 0.96428 1.02495 0.95034 1.21899 1.01222 0.96782 0.95828 1.21496 0.94419 0.95215 0.84227 0.93268 1.21417 0.94887 0.99696 0.80251 0.90955 1.22929 0.97510 1.00973 0.95747 1.20859 0.82727 0.97939 0.91694 1.44944 1.02330 1.86120 1.00761 1.19385 0.86171 1.40669 0.90446 0.90185 1.25659 0.99661 1.02342 0.98018 1.70186 1.22460 1.56244 1.10939 0.85079 0.78854 0.77221 0.78269 1.21708 1.21847 1.19198 1.74239 1.14064 1.26342 0.96644 0.93772 0.86894 0.89685 0.93026 0.87224 0.93302 0.88780 0.86902 0.92330 0.70885 0.90944 0.83189 0.92197 0.87953 0.93092 0.92888 0.91387 0.89914 0.96202 0.97492 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.71 8.72 71.98 0.63 -0.08 16 2 C 0.16 1.27 1.23 3.60 0.00 1.27 16 3 C -0.15 -1.67 8.04 71.98 0.58 -1.10 16 4 C -0.16 -0.17 8.28 71.98 0.60 0.43 16 5 N -0.29 -4.71 3.17 -311.58 -0.99 -5.70 16 6 C 0.20 2.71 11.71 180.30 2.11 4.82 16 7 N -0.49 -11.04 7.83 -193.04 -1.51 -12.55 16 8 C 0.12 3.79 7.60 137.13 1.04 4.83 16 9 C 0.60 22.97 7.65 86.79 0.66 23.63 16 10 O -0.57 -26.32 16.42 -3.86 -0.06 -26.38 16 11 N -0.57 -20.26 2.73 -796.86 -2.17 -22.44 16 12 C 0.08 2.34 5.77 86.63 0.50 2.84 16 13 C -0.12 -3.34 6.12 30.81 0.19 -3.15 16 14 C -0.12 -4.36 5.10 30.51 0.16 -4.20 16 15 C 0.15 6.82 3.60 45.07 0.16 6.98 16 16 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 17 C 0.14 6.02 3.13 46.14 0.14 6.16 16 18 H 0.07 3.48 6.93 -2.39 -0.02 3.47 16 19 C -0.13 -5.58 6.08 31.61 0.19 -5.39 16 20 C 0.19 10.20 5.20 86.80 0.45 10.65 16 21 N -0.62 -33.25 2.91 -667.05 -1.94 -35.19 16 22 C -0.24 -13.83 10.27 84.03 0.86 -12.97 16 23 H 0.08 4.48 7.84 -2.91 -0.02 4.46 16 24 C -0.06 -3.75 5.48 84.86 0.47 -3.28 16 25 N -0.95 -58.97 10.40 21.65 0.23 -58.74 16 26 Si 0.98 47.28 29.56 68.60 2.03 49.31 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 29 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 30 N -0.27 -7.59 11.10 -52.44 -0.58 -8.17 16 31 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 -0.07 8.14 -2.38 -0.02 -0.09 16 33 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.05 0.82 8.02 -2.39 -0.02 0.80 16 37 H 0.09 -0.30 7.34 -2.39 -0.02 -0.32 16 38 H 0.11 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.28 0.16 7.53 -2.91 -0.02 0.14 16 41 H 0.07 1.95 7.51 -2.39 -0.02 1.94 16 42 H 0.15 3.73 4.14 -22.95 -0.10 3.63 16 43 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.05 2.08 7.12 -2.39 -0.02 2.06 16 47 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 48 H 0.08 3.14 6.78 -2.39 -0.02 3.13 16 49 H 0.02 1.14 7.40 -2.39 -0.02 1.12 16 50 H 0.01 0.41 7.54 -2.39 -0.02 0.39 16 51 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -83.87 393.57 4.58 -79.29 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 0.84 Total: 9.13 kcal Atomic # 6 Polarization: 22.71 SS G_CDS: 8.75 Total: 31.46 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -6.97 Total: -142.80 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 47.28 SS G_CDS: 2.03 Total: 49.31 kcal Total: -83.87 4.58 -79.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049716684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.145 kcal (2) G-P(sol) polarization free energy of solvation -83.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds