Wall clock time and date at job start Wed Apr 1 2020 04:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46674 * 2 1 4 4 C 1.50699 * 109.46883 * 240.00684 * 2 1 3 5 5 O 1.21290 * 119.99691 * 239.99655 * 4 2 1 6 6 N 1.34776 * 120.00486 * 59.99385 * 4 2 1 7 7 C 1.46496 * 120.00406 * 179.97438 * 6 4 2 8 8 H 1.09002 * 110.63916 * 36.68897 * 7 6 4 9 9 C 1.54325 * 110.72145 * 273.55043 * 7 6 4 10 10 N 1.47017 * 107.27197 * 219.44134 * 9 7 6 11 11 C 1.36939 * 125.65128 * 178.97376 * 10 9 7 12 12 H 1.07995 * 120.00210 * 179.97438 * 11 10 9 13 13 C 1.38815 * 119.99790 * 359.97438 * 11 10 9 14 14 N 1.31615 * 119.99665 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99991 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46799 * 89.99938 * 15 13 11 17 17 H 1.48499 * 109.47465 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.47377 * 330.00539 * 15 13 11 19 19 C 1.47433 * 108.70202 * 358.94067 * 10 9 7 20 20 C 1.54903 * 104.83320 * 24.12857 * 19 10 9 21 21 H 1.09000 * 111.00751 * 204.91872 * 20 19 10 22 22 N 1.46503 * 111.00495 * 81.06419 * 20 19 10 23 23 C 1.35304 * 125.86977 * 332.80361 * 22 20 19 24 24 C 1.35345 * 106.17743 * 179.97438 * 23 22 20 25 25 N 1.33769 * 106.49596 * 0.02562 * 24 23 22 26 26 N 1.28637 * 108.88694 * 359.73160 * 25 24 23 27 27 C 1.52993 * 109.47559 * 120.00386 * 2 1 3 28 28 C 1.53784 * 113.61491 * 42.07081 * 27 2 1 29 29 C 1.53785 * 87.08194 * 220.02119 * 28 27 2 30 30 C 1.53786 * 87.08163 * 25.43404 * 29 28 27 31 31 H 1.08997 * 109.47031 * 53.46571 * 1 2 3 32 32 H 1.09004 * 109.46550 * 173.47116 * 1 2 3 33 33 H 1.08999 * 109.46820 * 293.46503 * 1 2 3 34 34 H 1.09003 * 109.47167 * 60.00548 * 3 2 1 35 35 H 1.09002 * 109.46679 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47573 * 300.00110 * 3 2 1 37 37 H 0.96999 * 119.99966 * 0.02562 * 6 4 2 38 38 H 1.08999 * 109.88088 * 338.85909 * 9 7 6 39 39 H 1.08996 * 109.88428 * 100.02497 * 9 7 6 40 40 H 0.97001 * 119.99540 * 179.97438 * 14 13 11 41 41 H 1.08998 * 110.36740 * 142.96862 * 19 10 9 42 42 H 1.08998 * 110.36282 * 265.28836 * 19 10 9 43 43 H 1.08003 * 126.91181 * 0.02562 * 23 22 20 44 44 H 1.08004 * 126.75464 * 179.97438 * 24 23 22 45 45 H 1.08999 * 112.85260 * 173.38199 * 27 2 1 46 46 H 1.09003 * 113.61285 * 334.56475 * 28 27 2 47 47 H 1.08992 * 113.61541 * 105.47348 * 28 27 2 48 48 H 1.08997 * 113.61045 * 270.88437 * 29 28 27 49 49 H 1.09003 * 113.68908 * 139.99203 * 29 28 27 50 50 H 1.09005 * 113.61182 * 220.02269 * 30 29 28 51 51 H 1.08992 * 113.69381 * 89.12945 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7297 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1954 -0.9400 -3.6509 8 1 2.2120 -2.0183 -3.4925 9 6 3.5956 -0.4245 -4.0449 10 7 3.6315 -0.3365 -5.5120 11 6 4.6930 0.0985 -6.2598 12 1 4.6198 0.1254 -7.3369 13 6 5.8632 0.5049 -5.6333 14 7 5.9525 0.4716 -4.3206 15 14 7.3114 1.0976 -6.6533 16 1 7.2052 2.5646 -6.8581 17 1 8.5777 0.7875 -5.9423 18 1 7.3027 0.4121 -7.9706 19 6 2.3355 -0.7950 -6.0449 20 6 1.3306 -0.5759 -4.8866 21 1 0.4770 -1.2476 -4.9776 22 7 0.8931 0.8210 -4.8281 23 6 1.6018 1.8923 -5.2533 24 6 0.8277 2.9762 -5.0129 25 7 -0.3017 2.5210 -4.4592 26 7 -0.2339 1.2396 -4.3683 27 6 2.0402 -0.7213 1.2491 28 6 1.2594 -2.0037 1.5819 29 6 1.3643 -1.5902 3.0594 30 6 1.4916 -0.1402 2.5631 31 1 -0.3633 0.6118 -0.8257 32 1 -0.3632 -1.0211 -0.1169 33 1 -0.3633 0.4092 0.9427 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.1493 0.5390 -2.5436 38 1 3.7637 0.5609 -3.6102 39 1 4.3585 -1.1206 -3.6966 40 1 6.7703 0.7552 -3.8828 41 1 2.0501 -0.1999 -6.9124 42 1 2.3862 -1.8514 -6.3085 43 1 2.5868 1.8841 -5.6962 44 1 1.0738 4.0061 -5.2255 45 1 3.1219 -0.8547 1.2487 46 1 0.2384 -2.0047 1.2003 47 1 1.8018 -2.9190 1.3452 48 1 2.2611 -1.9626 3.5544 49 1 0.4560 -1.7775 3.6322 50 1 2.2216 0.4488 3.1184 51 1 0.5349 0.3694 2.4494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001069989097.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:27 Heat of formation + Delta-G solvation = 118.224274 kcal Electronic energy + Delta-G solvation = -33086.435862 eV Core-core repulsion = 29025.008422 eV Total energy + Delta-G solvation = -4061.427440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.94599 -40.57243 -38.78031 -37.51093 -34.38538 -33.90303 -33.15244 -31.70553 -30.53141 -28.84057 -27.63938 -27.51710 -25.77657 -25.28731 -24.94227 -23.16674 -22.37680 -22.17375 -20.57745 -20.14682 -19.71132 -18.49236 -17.67037 -17.05042 -16.81505 -15.96005 -15.71761 -15.22154 -15.06235 -14.77881 -14.51021 -14.43723 -14.10652 -14.02260 -13.51201 -13.25625 -13.03939 -12.87416 -12.75705 -12.50189 -12.34419 -12.14886 -11.88275 -11.75139 -11.68607 -11.38975 -11.36949 -11.32378 -11.13518 -11.10992 -10.83944 -10.64679 -10.54100 -10.36314 -10.29197 -10.24044 -10.05389 -9.99417 -9.75912 -9.29971 -8.95893 -8.84116 -8.63704 -7.14957 -5.91889 -3.31491 2.00153 2.64564 2.93138 2.97779 3.28123 3.34036 3.36797 3.40703 4.28922 4.47743 4.55218 4.60552 4.65039 4.75221 4.82536 4.95064 4.97539 5.03741 5.08701 5.21665 5.29000 5.32750 5.44602 5.51145 5.61116 5.64528 5.68401 5.74230 5.75670 5.79852 5.80716 5.84192 5.85021 5.92117 5.97006 6.05589 6.07846 6.14502 6.14904 6.18983 6.24662 6.31060 6.53777 6.56238 6.64142 7.05152 7.30982 7.33462 7.62193 7.79064 7.97429 8.54631 8.86069 8.95331 9.55299 10.14950 11.17706 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.004024 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.052058 B = 6955.724581 C = 8338.650920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.070 4.070 3 C -0.138 4.138 4 C 0.527 3.473 5 O -0.532 6.532 6 N -0.716 5.716 7 C 0.111 3.889 8 H 0.108 0.892 9 C 0.170 3.830 10 N -0.602 5.602 11 C -0.247 4.247 12 H 0.083 0.917 13 C 0.004 3.996 14 N -0.911 5.911 15 Si 0.914 3.086 16 H -0.287 1.287 17 H -0.290 1.290 18 H -0.280 1.280 19 C 0.128 3.872 20 C 0.113 3.887 21 H 0.118 0.882 22 N -0.275 5.275 23 C -0.004 4.004 24 C -0.076 4.076 25 N -0.277 5.277 26 N -0.111 5.111 27 C -0.081 4.081 28 C -0.136 4.136 29 C -0.142 4.142 30 C -0.139 4.139 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.397 0.603 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.256 0.744 41 H 0.059 0.941 42 H 0.054 0.946 43 H 0.203 0.797 44 H 0.184 0.816 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 -0.044 7.940 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.073 4.073 3 C -0.196 4.196 4 C 0.313 3.687 5 O -0.408 6.408 6 N -0.368 5.368 7 C 0.004 3.996 8 H 0.126 0.874 9 C 0.044 3.956 10 N -0.329 5.329 11 C -0.374 4.374 12 H 0.101 0.899 13 C -0.195 4.195 14 N -0.556 5.556 15 Si 0.743 3.257 16 H -0.213 1.213 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.000 4.000 20 C 0.009 3.991 21 H 0.136 0.864 22 N -0.068 5.068 23 C -0.156 4.156 24 C -0.233 4.233 25 N -0.144 5.144 26 N -0.090 5.090 27 C -0.100 4.100 28 C -0.173 4.173 29 C -0.180 4.180 30 C -0.176 4.176 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.233 0.767 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.220 0.780 44 H 0.201 0.799 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.096 0.904 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.351 -1.114 8.714 14.354 hybrid contribution 1.787 0.925 -1.165 2.325 sum -9.565 -0.189 7.549 12.186 Atomic orbital electron populations 1.22005 0.92875 1.02506 1.02771 1.20692 0.96851 0.96506 0.93280 1.21804 1.02038 0.93433 1.02308 1.20428 0.79748 0.84371 0.84167 1.90688 1.37154 1.26341 1.86613 1.45883 1.53585 1.32090 1.05260 1.22822 0.96158 0.98484 0.82140 0.87399 1.21624 0.89350 1.00845 0.83752 1.44490 1.10161 1.76667 1.01621 1.18987 0.90612 1.37834 0.89945 0.89945 1.24844 0.98031 1.00772 0.95813 1.69953 1.27223 1.51654 1.06792 0.86113 0.81992 0.78552 0.79005 1.21348 1.21566 1.20549 1.21929 0.85724 0.99389 0.92929 1.23342 0.98846 0.76917 0.99964 0.86377 1.47256 1.11614 1.08799 1.39159 1.24190 1.01942 0.85683 1.03769 1.23538 0.92522 1.00602 1.06627 1.75002 1.21578 1.01144 1.16652 1.78207 1.04310 1.06855 1.19643 1.22338 1.00561 0.95644 0.91471 1.23002 1.00702 0.98184 0.95419 1.22787 1.01647 0.96769 0.96759 1.23057 1.01374 0.96530 0.96624 0.92030 0.91847 0.91188 0.91457 0.91756 0.92483 0.76719 0.92439 0.92346 0.93340 0.92311 0.92892 0.77979 0.79892 0.88568 0.89958 0.91283 0.90428 0.91791 0.91654 0.89821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.36 37.16 0.27 -1.36 16 2 C -0.07 -0.93 0.53 -155.66 -0.08 -1.01 16 3 C -0.14 -1.78 8.22 37.16 0.31 -1.47 16 4 C 0.53 8.95 6.42 -10.99 -0.07 8.88 16 5 O -0.53 -10.79 15.49 5.55 0.09 -10.71 16 6 N -0.72 -11.94 4.88 -52.03 -0.25 -12.19 16 7 C 0.11 1.96 3.11 -66.10 -0.21 1.76 16 8 H 0.11 1.93 7.69 -51.93 -0.40 1.53 16 9 C 0.17 3.75 4.75 -3.07 -0.01 3.74 16 10 N -0.60 -13.05 2.23 -170.08 -0.38 -13.43 16 11 C -0.25 -6.00 10.07 -15.06 -0.15 -6.15 16 12 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 13 C 0.00 0.09 5.49 -17.43 -0.10 0.00 16 14 N -0.91 -24.88 10.31 55.49 0.57 -24.31 16 15 Si 0.91 20.50 29.55 -169.99 -5.02 15.48 16 16 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 C 0.13 2.18 6.21 -2.53 -0.02 2.16 16 20 C 0.11 1.76 4.06 -65.78 -0.27 1.49 16 21 H 0.12 1.54 8.14 -51.93 -0.42 1.12 16 22 N -0.28 -4.47 2.45 -52.68 -0.13 -4.60 16 23 C 0.00 -0.07 10.01 -17.05 -0.17 -0.24 16 24 C -0.08 -1.18 12.05 -17.74 -0.21 -1.40 16 25 N -0.28 -4.71 12.41 30.23 0.38 -4.34 16 26 N -0.11 -1.87 12.20 60.35 0.74 -1.13 16 27 C -0.08 -1.03 2.43 -89.80 -0.22 -1.24 16 28 C -0.14 -1.59 7.10 -25.91 -0.18 -1.78 16 29 C -0.14 -1.38 8.08 -25.91 -0.21 -1.59 16 30 C -0.14 -1.37 6.70 -25.91 -0.17 -1.54 16 31 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 32 H 0.06 0.72 6.45 -51.93 -0.33 0.38 16 33 H 0.07 0.66 6.01 -51.93 -0.31 0.35 16 34 H 0.07 0.71 7.59 -51.93 -0.39 0.32 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.77 7.56 -51.93 -0.39 0.38 16 37 H 0.40 6.47 5.69 -40.82 -0.23 6.24 16 38 H 0.06 1.44 7.27 -51.93 -0.38 1.06 16 39 H 0.06 1.54 7.50 -51.93 -0.39 1.15 16 40 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.06 0.97 7.86 -51.93 -0.41 0.56 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.20 3.74 6.81 -52.48 -0.36 3.38 16 44 H 0.18 2.28 8.06 -52.48 -0.42 1.86 16 45 H 0.10 1.40 8.00 -51.93 -0.42 0.99 16 46 H 0.08 0.91 5.72 -51.93 -0.30 0.62 16 47 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.08 0.75 6.04 -51.93 -0.31 0.44 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -28.76 392.57 -7.55 -36.31 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -7.96 Total: 12.77 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.49 Total: 0.23 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.92 Total: -60.00 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -28.76 -7.55 -36.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069989097.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.537 kcal (2) G-P(sol) polarization free energy of solvation -28.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds