Wall clock time and date at job start Wed Apr 1 2020 04:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46674 * 2 1 4 4 C 1.50699 * 109.46883 * 240.00684 * 2 1 3 5 5 O 1.21290 * 119.99691 * 239.99655 * 4 2 1 6 6 N 1.34776 * 120.00486 * 59.99385 * 4 2 1 7 7 C 1.46496 * 120.00406 * 179.97438 * 6 4 2 8 8 H 1.09002 * 110.63916 * 36.68897 * 7 6 4 9 9 C 1.54325 * 110.72145 * 273.55043 * 7 6 4 10 10 N 1.47017 * 107.27197 * 219.44134 * 9 7 6 11 11 C 1.36939 * 125.65128 * 178.97376 * 10 9 7 12 12 H 1.07995 * 120.00210 * 179.97438 * 11 10 9 13 13 C 1.38815 * 119.99790 * 359.97438 * 11 10 9 14 14 N 1.31615 * 119.99665 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99991 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46799 * 89.99938 * 15 13 11 17 17 H 1.48499 * 109.47465 * 210.00088 * 15 13 11 18 18 H 1.48498 * 109.47377 * 330.00539 * 15 13 11 19 19 C 1.47433 * 108.70202 * 358.94067 * 10 9 7 20 20 C 1.54903 * 104.83320 * 24.12857 * 19 10 9 21 21 H 1.09000 * 111.00751 * 204.91872 * 20 19 10 22 22 N 1.46503 * 111.00495 * 81.06419 * 20 19 10 23 23 C 1.35304 * 125.86977 * 332.80361 * 22 20 19 24 24 C 1.35345 * 106.17743 * 179.97438 * 23 22 20 25 25 N 1.33769 * 106.49596 * 0.02562 * 24 23 22 26 26 N 1.28637 * 108.88694 * 359.73160 * 25 24 23 27 27 C 1.52993 * 109.47559 * 120.00386 * 2 1 3 28 28 C 1.53784 * 113.61491 * 42.07081 * 27 2 1 29 29 C 1.53785 * 87.08194 * 220.02119 * 28 27 2 30 30 C 1.53786 * 87.08163 * 25.43404 * 29 28 27 31 31 H 1.08997 * 109.47031 * 53.46571 * 1 2 3 32 32 H 1.09004 * 109.46550 * 173.47116 * 1 2 3 33 33 H 1.08999 * 109.46820 * 293.46503 * 1 2 3 34 34 H 1.09003 * 109.47167 * 60.00548 * 3 2 1 35 35 H 1.09002 * 109.46679 * 180.02562 * 3 2 1 36 36 H 1.08993 * 109.47573 * 300.00110 * 3 2 1 37 37 H 0.96999 * 119.99966 * 0.02562 * 6 4 2 38 38 H 1.08999 * 109.88088 * 338.85909 * 9 7 6 39 39 H 1.08996 * 109.88428 * 100.02497 * 9 7 6 40 40 H 0.97001 * 119.99540 * 179.97438 * 14 13 11 41 41 H 1.08998 * 110.36740 * 142.96862 * 19 10 9 42 42 H 1.08998 * 110.36282 * 265.28836 * 19 10 9 43 43 H 1.08003 * 126.91181 * 0.02562 * 23 22 20 44 44 H 1.08004 * 126.75464 * 179.97438 * 24 23 22 45 45 H 1.08999 * 112.85260 * 173.38199 * 27 2 1 46 46 H 1.09003 * 113.61285 * 334.56475 * 28 27 2 47 47 H 1.08992 * 113.61541 * 105.47348 * 28 27 2 48 48 H 1.08997 * 113.61045 * 270.88437 * 29 28 27 49 49 H 1.09003 * 113.68908 * 139.99203 * 29 28 27 50 50 H 1.09005 * 113.61182 * 220.02269 * 30 29 28 51 51 H 1.08992 * 113.69381 * 89.12945 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7297 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1954 -0.9400 -3.6509 8 1 2.2120 -2.0183 -3.4925 9 6 3.5956 -0.4245 -4.0449 10 7 3.6315 -0.3365 -5.5120 11 6 4.6930 0.0985 -6.2598 12 1 4.6198 0.1254 -7.3369 13 6 5.8632 0.5049 -5.6333 14 7 5.9525 0.4716 -4.3206 15 14 7.3114 1.0976 -6.6533 16 1 7.2052 2.5646 -6.8581 17 1 8.5777 0.7875 -5.9423 18 1 7.3027 0.4121 -7.9706 19 6 2.3355 -0.7950 -6.0449 20 6 1.3306 -0.5759 -4.8866 21 1 0.4770 -1.2476 -4.9776 22 7 0.8931 0.8210 -4.8281 23 6 1.6018 1.8923 -5.2533 24 6 0.8277 2.9762 -5.0129 25 7 -0.3017 2.5210 -4.4592 26 7 -0.2339 1.2396 -4.3683 27 6 2.0402 -0.7213 1.2491 28 6 1.2594 -2.0037 1.5819 29 6 1.3643 -1.5902 3.0594 30 6 1.4916 -0.1402 2.5631 31 1 -0.3633 0.6118 -0.8257 32 1 -0.3632 -1.0211 -0.1169 33 1 -0.3633 0.4092 0.9427 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.1493 0.5390 -2.5436 38 1 3.7637 0.5609 -3.6102 39 1 4.3585 -1.1206 -3.6966 40 1 6.7703 0.7552 -3.8828 41 1 2.0501 -0.1999 -6.9124 42 1 2.3862 -1.8514 -6.3085 43 1 2.5868 1.8841 -5.6962 44 1 1.0738 4.0061 -5.2255 45 1 3.1219 -0.8547 1.2487 46 1 0.2384 -2.0047 1.2003 47 1 1.8018 -2.9190 1.3452 48 1 2.2611 -1.9626 3.5544 49 1 0.4560 -1.7775 3.6322 50 1 2.2216 0.4488 3.1184 51 1 0.5349 0.3694 2.4494 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001069989097.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:25 Heat of formation + Delta-G solvation = 101.620405 kcal Electronic energy + Delta-G solvation = -33087.155860 eV Core-core repulsion = 29025.008422 eV Total energy + Delta-G solvation = -4062.147437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.26318 -41.76893 -40.08502 -38.88343 -35.87299 -35.28849 -34.43165 -33.40600 -31.84599 -30.46643 -29.16383 -28.53212 -26.77945 -26.64044 -26.16338 -24.47247 -23.79726 -23.46052 -22.08967 -21.51457 -21.02010 -19.60487 -19.13228 -18.57549 -18.14921 -17.31304 -16.99150 -16.69085 -16.25829 -16.03317 -15.93004 -15.75628 -15.64187 -15.32082 -14.98115 -14.63369 -14.23930 -13.97625 -13.93134 -13.85618 -13.72455 -13.34543 -13.22735 -13.07153 -12.86382 -12.82170 -12.72397 -12.56578 -12.51686 -12.34004 -12.29025 -12.09756 -12.07602 -11.89136 -11.82619 -11.29737 -11.25548 -11.12341 -10.96341 -10.76706 -10.61489 -10.25983 -10.14394 -9.02048 -7.87880 -5.27378 0.65819 1.32767 1.47774 1.49110 1.57040 1.60406 1.65012 2.05701 2.46475 3.13261 3.32657 3.37800 3.45262 3.55125 3.64078 3.67535 3.75335 3.91536 3.93549 3.99406 4.07783 4.18480 4.22475 4.29684 4.33256 4.43058 4.45953 4.60360 4.66860 4.72734 4.73779 4.79252 4.83732 4.84615 4.89252 4.95492 5.02607 5.10971 5.11883 5.14433 5.23145 5.25173 5.30257 5.41118 5.43135 5.50514 5.66582 5.67610 5.73070 6.07716 6.40270 6.99818 7.17507 7.54582 7.67735 8.27413 9.20572 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010821 B = 0.004024 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.052058 B = 6955.724581 C = 8338.650920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.134 4.134 4 C 0.519 3.481 5 O -0.572 6.572 6 N -0.710 5.710 7 C 0.119 3.881 8 H 0.108 0.892 9 C 0.193 3.807 10 N -0.615 5.615 11 C -0.238 4.238 12 H 0.096 0.904 13 C -0.055 4.055 14 N -0.947 5.947 15 Si 0.973 3.027 16 H -0.284 1.284 17 H -0.305 1.305 18 H -0.267 1.267 19 C 0.127 3.873 20 C 0.127 3.873 21 H 0.157 0.843 22 N -0.273 5.273 23 C -0.019 4.019 24 C -0.064 4.064 25 N -0.289 5.289 26 N -0.110 5.110 27 C -0.093 4.093 28 C -0.139 4.139 29 C -0.133 4.133 30 C -0.125 4.125 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.040 0.960 36 H 0.048 0.952 37 H 0.401 0.599 38 H 0.020 0.980 39 H 0.003 0.997 40 H 0.244 0.756 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.185 0.815 44 H 0.212 0.788 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.044 0.956 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.072 0.928 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.653 0.697 7.863 15.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 C -0.192 4.192 4 C 0.307 3.693 5 O -0.451 6.451 6 N -0.362 5.362 7 C 0.012 3.988 8 H 0.126 0.874 9 C 0.067 3.933 10 N -0.342 5.342 11 C -0.366 4.366 12 H 0.113 0.887 13 C -0.249 4.249 14 N -0.595 5.595 15 Si 0.802 3.198 16 H -0.210 1.210 17 H -0.233 1.233 18 H -0.191 1.191 19 C 0.001 3.999 20 C 0.024 3.976 21 H 0.174 0.826 22 N -0.067 5.067 23 C -0.171 4.171 24 C -0.221 4.221 25 N -0.155 5.155 26 N -0.089 5.089 27 C -0.112 4.112 28 C -0.176 4.176 29 C -0.170 4.170 30 C -0.162 4.162 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.117 0.883 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.238 0.762 38 H 0.039 0.961 39 H 0.022 0.978 40 H 0.053 0.947 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.202 0.798 44 H 0.229 0.771 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.090 0.910 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.308 -0.366 8.597 16.696 hybrid contribution 2.692 0.669 -1.195 3.021 sum -11.615 0.303 7.402 13.777 Atomic orbital electron populations 1.21994 0.90551 1.02781 1.04186 1.20740 0.98509 0.96061 0.91395 1.21792 1.00552 0.93400 1.03410 1.21293 0.78849 0.83967 0.85236 1.90669 1.38887 1.28333 1.87187 1.45854 1.53241 1.32047 1.05035 1.22531 0.94259 0.98358 0.83700 0.87400 1.21087 0.90734 0.97400 0.84117 1.44612 1.11563 1.76538 1.01476 1.19391 0.90956 1.35554 0.90710 0.88678 1.25569 1.00642 1.02155 0.96511 1.70195 1.26997 1.53855 1.08428 0.85169 0.78579 0.78151 0.77941 1.21032 1.23271 1.19140 1.22140 0.83577 1.00534 0.93669 1.23343 0.99434 0.77409 0.97439 0.82554 1.47285 1.11507 1.08841 1.39052 1.24044 1.01622 0.86501 1.04911 1.23979 0.91508 1.01589 1.04992 1.75010 1.22118 1.01203 1.17171 1.78186 1.04182 1.07034 1.19480 1.22349 0.99002 0.97077 0.92786 1.23043 1.00668 0.96597 0.97334 1.22753 1.02603 0.96302 0.95392 1.23044 1.02148 0.96818 0.94175 0.92344 0.91757 0.88386 0.88341 0.94111 0.93269 0.76213 0.96140 0.97849 0.94692 0.90942 0.90628 0.79775 0.77086 0.91756 0.88828 0.93727 0.90646 0.89654 0.90968 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 7.36 71.98 0.53 -2.26 16 2 C -0.06 -1.67 0.53 -52.93 -0.03 -1.70 16 3 C -0.13 -3.39 8.22 71.98 0.59 -2.80 16 4 C 0.52 18.19 6.42 87.66 0.56 18.75 16 5 O -0.57 -24.61 15.49 -3.06 -0.05 -24.66 16 6 N -0.71 -24.00 4.88 -436.91 -2.13 -26.13 16 7 C 0.12 4.27 3.11 46.18 0.14 4.41 16 8 H 0.11 3.92 7.69 -2.39 -0.02 3.90 16 9 C 0.19 8.98 4.75 86.73 0.41 9.39 16 10 N -0.61 -27.01 2.23 -692.00 -1.55 -28.56 16 11 C -0.24 -11.67 10.07 84.03 0.85 -10.83 16 12 H 0.10 4.35 7.83 -2.91 -0.02 4.33 16 13 C -0.05 -2.89 5.49 84.86 0.47 -2.42 16 14 N -0.95 -54.76 10.31 21.65 0.22 -54.54 16 15 Si 0.97 43.12 29.55 68.60 2.03 45.15 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.31 -14.23 7.11 99.48 0.71 -13.52 16 18 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 19 C 0.13 4.11 6.21 86.85 0.54 4.65 16 20 C 0.13 3.73 4.06 46.38 0.19 3.91 16 21 H 0.16 3.52 8.14 -2.39 -0.02 3.50 16 22 N -0.27 -8.43 2.45 -320.59 -0.79 -9.22 16 23 C -0.02 -0.62 10.01 83.49 0.84 0.21 16 24 C -0.06 -1.87 12.05 83.73 1.01 -0.86 16 25 N -0.29 -9.16 12.41 -58.26 -0.72 -9.89 16 26 N -0.11 -3.45 12.20 37.02 0.45 -3.00 16 27 C -0.09 -2.34 2.43 -10.27 -0.02 -2.37 16 28 C -0.14 -3.19 7.10 31.12 0.22 -2.97 16 29 C -0.13 -2.32 8.08 31.12 0.25 -2.07 16 30 C -0.12 -2.16 6.70 31.13 0.21 -1.95 16 31 H 0.06 1.23 7.75 -2.39 -0.02 1.22 16 32 H 0.06 1.30 6.45 -2.38 -0.02 1.29 16 33 H 0.10 1.44 6.01 -2.39 -0.01 1.43 16 34 H 0.10 1.86 7.59 -2.39 -0.02 1.84 16 35 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.31 7.56 -2.39 -0.02 1.29 16 37 H 0.40 12.91 5.69 -92.71 -0.53 12.38 16 38 H 0.02 1.09 7.27 -2.39 -0.02 1.08 16 39 H 0.00 0.19 7.50 -2.39 -0.02 0.17 16 40 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.07 2.20 7.86 -2.39 -0.02 2.19 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.19 6.82 6.81 -2.91 -0.02 6.80 16 44 H 0.21 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.06 2.01 8.00 -2.39 -0.02 1.99 16 46 H 0.09 1.91 5.72 -2.39 -0.01 1.90 16 47 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 51 H 0.10 1.41 6.04 -2.39 -0.01 1.39 16 Total: -1.00 -66.94 392.57 4.64 -62.30 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: 0.42 Total: 37.44 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.75 Total: 11.11 kcal Atomic # 7 Polarization: -126.82 SS G_CDS: -4.51 Total: -131.33 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -66.94 4.64 -62.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001069989097.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.919 kcal (2) G-P(sol) polarization free energy of solvation -66.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds