Wall clock time and date at job start Wed Apr 1 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 C 1.53002 * 109.47107 * 119.99758 * 2 1 3 5 5 C 1.50703 * 109.47258 * 300.00208 * 4 2 1 6 6 O 1.21278 * 119.99662 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99866 * 180.02562 * 5 4 2 8 8 C 1.47430 * 125.65057 * 359.96789 * 7 5 4 9 9 C 1.54912 * 104.83164 * 204.15303 * 8 7 5 10 10 H 1.08994 * 111.03519 * 81.08615 * 9 8 7 11 11 N 1.46502 * 111.00180 * 204.91846 * 9 8 7 12 12 C 1.36930 * 120.00159 * 267.19759 * 11 9 8 13 13 H 1.08000 * 119.99841 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00182 * 179.97438 * 12 11 9 15 15 N 1.31622 * 119.99887 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99941 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00122 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00115 * 16 14 12 20 20 C 1.55155 * 101.58288 * 322.99095 * 9 8 7 21 21 H 1.09001 * 110.71857 * 153.86814 * 20 9 8 22 22 N 1.46493 * 110.72551 * 276.96323 * 20 9 8 23 23 C 1.35314 * 125.87066 * 84.71182 * 22 20 9 24 24 C 1.35349 * 106.17751 * 179.91003 * 23 22 20 25 25 N 1.33774 * 106.49772 * 0.35263 * 24 23 22 26 26 N 1.28638 * 108.88188 * 359.77293 * 25 24 23 27 27 C 1.47027 * 125.64741 * 180.02562 * 7 5 4 28 28 C 1.52994 * 109.47292 * 239.99955 * 2 1 3 29 29 C 1.53001 * 117.50255 * 128.62129 * 28 2 1 30 30 C 1.52999 * 59.99968 * 252.51213 * 29 28 2 31 31 H 1.08997 * 109.47321 * 300.00043 * 1 2 3 32 32 H 1.08999 * 109.46959 * 60.00176 * 1 2 3 33 33 H 1.09006 * 109.47172 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46880 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47085 * 299.99746 * 3 2 1 36 36 H 1.09000 * 109.47423 * 60.00207 * 3 2 1 37 37 H 1.08997 * 109.47419 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.46953 * 60.00052 * 4 2 1 39 39 H 1.09004 * 110.35843 * 85.31608 * 8 7 5 40 40 H 1.08997 * 110.36971 * 322.99577 * 8 7 5 41 41 H 0.97008 * 119.99482 * 87.19815 * 11 9 8 42 42 H 0.96993 * 120.00105 * 359.97438 * 15 14 12 43 43 H 1.08010 * 126.90926 * 0.02562 * 23 22 20 44 44 H 1.08008 * 126.75129 * 180.12689 * 24 23 22 45 45 H 1.09000 * 109.88094 * 59.49913 * 27 7 5 46 46 H 1.08999 * 109.88100 * 298.33350 * 27 7 5 47 47 H 1.09006 * 115.54980 * 274.33240 * 28 2 1 48 48 H 1.09000 * 117.49304 * 0.02562 * 29 28 2 49 49 H 1.08996 * 117.49986 * 145.01949 * 29 28 2 50 50 H 1.09011 * 117.49491 * 252.50873 * 30 29 28 51 51 H 1.08992 * 117.49909 * 107.49138 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4798 6 8 0.8400 0.9750 2.3684 7 7 1.8636 -0.4709 3.7038 8 6 2.6994 -1.6529 3.9830 9 6 2.2751 -2.1129 5.4000 10 1 1.3600 -2.7038 5.3619 11 7 3.3523 -2.8600 6.0541 12 6 3.3987 -4.2247 5.9524 13 1 2.6414 -4.7504 5.3897 14 6 4.4197 -4.9325 6.5717 15 7 5.3428 -4.2919 7.2571 16 14 4.4826 -6.7943 6.4336 17 1 5.2791 -7.1755 5.2396 18 1 3.1032 -7.3277 6.2993 19 1 5.1155 -7.3600 7.6520 20 6 2.0308 -0.7543 6.1085 21 1 1.3144 -0.8670 6.9222 22 7 3.2906 -0.1939 6.6035 23 6 4.1638 0.5498 5.8857 24 6 5.1790 0.8558 6.7269 25 7 4.8850 0.2851 7.9006 26 7 3.7598 -0.3292 7.7945 27 6 1.4438 0.1221 4.9820 28 6 2.0400 -0.7212 -1.2492 29 6 3.0742 0.0051 -2.1117 30 6 1.6357 -0.1495 -2.6095 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.1300 -0.7216 1.2491 38 1 1.6766 -1.7489 1.2493 39 1 3.7552 -1.3819 3.9723 40 1 2.5012 -2.4385 3.2538 41 1 4.0326 -2.3878 6.5592 42 1 5.3100 -3.3252 7.3291 43 1 4.0688 0.8423 4.8503 44 1 6.0561 1.4420 6.4951 45 1 0.3557 0.1301 5.0472 46 1 1.8297 1.1382 5.0638 47 1 2.1267 -1.8045 -1.1641 48 1 3.3914 0.9967 -1.7888 49 1 3.8416 -0.6002 -2.5941 50 1 1.4569 -0.8567 -3.4196 51 1 1.0065 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070190171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:49 Heat of formation + Delta-G solvation = 119.389778 kcal Electronic energy + Delta-G solvation = -32122.839281 eV Core-core repulsion = 28061.462381 eV Total energy + Delta-G solvation = -4061.376900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.03875 -40.60456 -39.06400 -37.68955 -34.66659 -33.77832 -33.69240 -31.35561 -30.77131 -29.97050 -27.86443 -27.65238 -27.45651 -24.50298 -23.72431 -23.23910 -22.42185 -22.38502 -21.79466 -20.33821 -19.45038 -18.46643 -17.93992 -17.48361 -17.22975 -16.26017 -15.94553 -15.85655 -15.53273 -14.82325 -14.59492 -14.50849 -14.41218 -13.92329 -13.76340 -13.68692 -13.59868 -13.47664 -13.13343 -12.95171 -12.46218 -12.29588 -11.97064 -11.85851 -11.77412 -11.46954 -11.40851 -11.29443 -11.22111 -11.11753 -10.89569 -10.85234 -10.80341 -10.59342 -10.46328 -10.13611 -10.05279 -9.84394 -9.60700 -9.37567 -9.18648 -9.06954 -8.72203 -7.35899 -6.28297 -3.35524 1.89452 2.47828 2.55468 2.82205 2.92325 3.41747 3.46120 3.59685 3.60982 3.99691 4.35437 4.44866 4.48932 4.54285 4.68102 4.73271 4.76522 4.81351 4.91958 4.97719 5.07691 5.11347 5.19351 5.28210 5.30327 5.40404 5.41169 5.45284 5.47370 5.50383 5.51122 5.56567 5.65769 5.67666 5.70197 5.82079 5.89438 5.90525 5.92233 5.98074 6.01748 6.07765 6.15234 6.21879 6.35125 6.40877 6.41779 6.86064 7.39868 7.57079 8.08376 8.55371 8.85428 8.93564 9.81518 9.90218 11.17832 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.003399 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.553570 B = 8236.512257 C = 9959.489379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.013 4.013 3 C -0.156 4.156 4 C -0.125 4.125 5 C 0.533 3.467 6 O -0.537 6.537 7 N -0.617 5.617 8 C 0.066 3.934 9 C 0.173 3.827 10 H 0.094 0.906 11 N -0.715 5.715 12 C -0.357 4.357 13 H 0.070 0.930 14 C -0.031 4.031 15 N -0.926 5.926 16 Si 1.084 2.916 17 H -0.293 1.293 18 H -0.292 1.292 19 H -0.286 1.286 20 C 0.110 3.890 21 H 0.131 0.869 22 N -0.270 5.270 23 C -0.051 4.051 24 C -0.055 4.055 25 N -0.272 5.272 26 N -0.069 5.069 27 C 0.107 3.893 28 C -0.144 4.144 29 C -0.185 4.185 30 C -0.177 4.177 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.376 0.624 42 H 0.260 0.740 43 H 0.179 0.821 44 H 0.185 0.815 45 H 0.094 0.906 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.100 0.900 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.959 10.502 -15.796 20.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 C -0.213 4.213 4 C -0.165 4.165 5 C 0.323 3.677 6 O -0.415 6.415 7 N -0.352 5.352 8 C -0.060 4.060 9 C 0.058 3.942 10 H 0.112 0.888 11 N -0.356 5.356 12 C -0.487 4.487 13 H 0.088 0.912 14 C -0.231 4.231 15 N -0.568 5.568 16 Si 0.914 3.086 17 H -0.221 1.221 18 H -0.219 1.219 19 H -0.211 1.211 20 C 0.005 3.995 21 H 0.149 0.851 22 N -0.064 5.064 23 C -0.201 4.201 24 C -0.212 4.212 25 N -0.137 5.137 26 N -0.049 5.049 27 C -0.017 4.017 28 C -0.163 4.163 29 C -0.222 4.222 30 C -0.214 4.214 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.212 0.788 42 H 0.071 0.929 43 H 0.196 0.804 44 H 0.202 0.798 45 H 0.112 0.888 46 H 0.097 0.903 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.108 0.892 50 H 0.109 0.891 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.852 8.906 -14.139 18.463 hybrid contribution -0.365 1.751 -1.660 2.440 sum -8.217 10.657 -15.799 20.753 Atomic orbital electron populations 1.22073 0.93818 1.01527 1.03290 1.19743 0.96034 0.94814 0.90755 1.22219 1.00184 0.95512 1.03352 1.21715 1.02640 1.00481 0.91667 1.20366 0.79848 0.84236 0.83216 1.90571 1.38482 1.26734 1.85756 1.48603 1.51740 1.30213 1.04678 1.23649 0.94842 0.86262 1.01243 1.21598 0.94872 0.88676 0.89057 0.88826 1.42356 1.28284 1.04709 1.60294 1.20008 1.12800 0.82337 1.33596 0.91170 1.25900 0.93713 1.06795 0.96734 1.70825 1.35001 1.09698 1.41317 0.83195 0.75179 0.73813 0.76410 1.22082 1.21906 1.21132 1.23241 0.82354 0.96052 0.97822 0.85088 1.47284 1.17134 1.33327 1.08645 1.23439 0.93376 1.02441 1.00892 1.23513 1.01309 1.05745 0.90658 1.75140 1.06594 1.09522 1.22464 1.78423 1.06992 1.18522 1.00929 1.22115 1.00733 0.96778 0.82100 1.22360 1.03702 0.98922 0.91274 1.23145 0.92423 1.02617 1.03978 1.22903 0.98191 1.03228 0.97083 0.89787 0.93098 0.93446 0.93123 0.93090 0.89731 0.88787 0.88750 0.91125 0.89903 0.78831 0.92859 0.80392 0.79804 0.88809 0.90314 0.87875 0.88132 0.89166 0.89117 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.02 37.16 0.30 -1.24 16 2 C -0.01 -0.13 0.62 -154.51 -0.10 -0.22 16 3 C -0.16 -1.57 6.77 37.16 0.25 -1.32 16 4 C -0.13 -1.27 3.76 -27.88 -0.10 -1.38 16 5 C 0.53 6.46 7.26 -10.99 -0.08 6.38 16 6 O -0.54 -7.51 11.67 5.56 0.06 -7.45 16 7 N -0.62 -7.47 3.33 -170.51 -0.57 -8.04 16 8 C 0.07 0.93 5.97 -2.52 -0.02 0.92 16 9 C 0.17 2.89 3.58 -65.78 -0.24 2.66 16 10 H 0.09 1.52 8.09 -51.93 -0.42 1.10 16 11 N -0.72 -16.34 5.20 -51.35 -0.27 -16.61 16 12 C -0.36 -9.27 9.96 -15.06 -0.15 -9.42 16 13 H 0.07 1.75 7.83 -52.49 -0.41 1.33 16 14 C -0.03 -0.87 5.50 -17.43 -0.10 -0.97 16 15 N -0.93 -28.25 13.70 55.49 0.76 -27.49 16 16 Si 1.08 24.77 29.92 -169.99 -5.09 19.69 16 17 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 19 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.11 1.56 3.96 -66.10 -0.26 1.30 16 21 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 22 N -0.27 -4.44 2.38 -52.98 -0.13 -4.57 16 23 C -0.05 -0.75 9.36 -17.05 -0.16 -0.90 16 24 C -0.06 -0.86 12.05 -17.74 -0.21 -1.08 16 25 N -0.27 -5.33 12.41 30.24 0.38 -4.96 16 26 N -0.07 -1.38 12.28 60.35 0.74 -0.64 16 27 C 0.11 1.25 5.92 -3.06 -0.02 1.23 16 28 C -0.14 -1.26 5.15 -90.62 -0.47 -1.72 16 29 C -0.18 -1.50 9.57 -26.73 -0.26 -1.75 16 30 C -0.18 -1.41 9.38 -26.73 -0.25 -1.66 16 31 H 0.08 1.02 5.51 -51.93 -0.29 0.74 16 32 H 0.05 0.48 7.29 -51.93 -0.38 0.11 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.05 0.48 6.98 -51.93 -0.36 0.12 16 35 H 0.05 0.48 7.07 -51.93 -0.37 0.11 16 36 H 0.08 1.02 5.51 -51.93 -0.29 0.73 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.09 0.90 7.85 -51.93 -0.41 0.49 16 39 H 0.07 1.10 7.58 -51.93 -0.39 0.71 16 40 H 0.08 1.13 7.48 -51.93 -0.39 0.74 16 41 H 0.38 9.33 4.83 -40.82 -0.20 9.13 16 42 H 0.26 8.06 6.77 -40.82 -0.28 7.78 16 43 H 0.18 2.16 7.72 -52.48 -0.41 1.76 16 44 H 0.18 2.20 8.06 -52.48 -0.42 1.77 16 45 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.08 0.92 7.19 -51.93 -0.37 0.54 16 47 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 48 H 0.10 0.82 5.85 -51.93 -0.30 0.51 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.65 8.14 -51.92 -0.42 0.23 16 51 H 0.09 0.74 7.07 -51.93 -0.37 0.37 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -32.30 394.69 -7.81 -40.11 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -7.80 Total: 13.18 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -1.85 Total: -9.17 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.92 Total: -62.30 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.06 Total: -7.45 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.09 Total: 19.69 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.30 -7.81 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070190171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.501 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds