Wall clock time and date at job start Wed Apr 1 2020 05:13:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47071 * 2 1 4 4 C 1.53002 * 109.47107 * 119.99758 * 2 1 3 5 5 C 1.50703 * 109.47258 * 300.00208 * 4 2 1 6 6 O 1.21278 * 119.99662 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99866 * 180.02562 * 5 4 2 8 8 C 1.47430 * 125.65057 * 359.96789 * 7 5 4 9 9 C 1.54912 * 104.83164 * 204.15303 * 8 7 5 10 10 H 1.08994 * 111.03519 * 81.08615 * 9 8 7 11 11 N 1.46502 * 111.00180 * 204.91846 * 9 8 7 12 12 C 1.36930 * 120.00159 * 267.19759 * 11 9 8 13 13 H 1.08000 * 119.99841 * 0.02562 * 12 11 9 14 14 C 1.38810 * 120.00182 * 179.97438 * 12 11 9 15 15 N 1.31622 * 119.99887 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00212 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47297 * 89.99941 * 16 14 12 18 18 H 1.48503 * 109.47261 * 330.00122 * 16 14 12 19 19 H 1.48500 * 109.47454 * 210.00115 * 16 14 12 20 20 C 1.55155 * 101.58288 * 322.99095 * 9 8 7 21 21 H 1.09001 * 110.71857 * 153.86814 * 20 9 8 22 22 N 1.46493 * 110.72551 * 276.96323 * 20 9 8 23 23 C 1.35314 * 125.87066 * 84.71182 * 22 20 9 24 24 C 1.35349 * 106.17751 * 179.91003 * 23 22 20 25 25 N 1.33774 * 106.49772 * 0.35263 * 24 23 22 26 26 N 1.28638 * 108.88188 * 359.77293 * 25 24 23 27 27 C 1.47027 * 125.64741 * 180.02562 * 7 5 4 28 28 C 1.52994 * 109.47292 * 239.99955 * 2 1 3 29 29 C 1.53001 * 117.50255 * 128.62129 * 28 2 1 30 30 C 1.52999 * 59.99968 * 252.51213 * 29 28 2 31 31 H 1.08997 * 109.47321 * 300.00043 * 1 2 3 32 32 H 1.08999 * 109.46959 * 60.00176 * 1 2 3 33 33 H 1.09006 * 109.47172 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46880 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47085 * 299.99746 * 3 2 1 36 36 H 1.09000 * 109.47423 * 60.00207 * 3 2 1 37 37 H 1.08997 * 109.47419 * 179.97438 * 4 2 1 38 38 H 1.09006 * 109.46953 * 60.00052 * 4 2 1 39 39 H 1.09004 * 110.35843 * 85.31608 * 8 7 5 40 40 H 1.08997 * 110.36971 * 322.99577 * 8 7 5 41 41 H 0.97008 * 119.99482 * 87.19815 * 11 9 8 42 42 H 0.96993 * 120.00105 * 359.97438 * 15 14 12 43 43 H 1.08010 * 126.90926 * 0.02562 * 23 22 20 44 44 H 1.08008 * 126.75129 * 180.12689 * 24 23 22 45 45 H 1.09000 * 109.88094 * 59.49913 * 27 7 5 46 46 H 1.08999 * 109.88100 * 298.33350 * 27 7 5 47 47 H 1.09006 * 115.54980 * 274.33240 * 28 2 1 48 48 H 1.09000 * 117.49304 * 0.02562 * 29 28 2 49 49 H 1.08996 * 117.49986 * 145.01949 * 29 28 2 50 50 H 1.09011 * 117.49491 * 252.50873 * 30 29 28 51 51 H 1.08992 * 117.49909 * 107.49138 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5376 -0.0108 2.4798 6 8 0.8400 0.9750 2.3684 7 7 1.8636 -0.4709 3.7038 8 6 2.6994 -1.6529 3.9830 9 6 2.2751 -2.1129 5.4000 10 1 1.3600 -2.7038 5.3619 11 7 3.3523 -2.8600 6.0541 12 6 3.3987 -4.2247 5.9524 13 1 2.6414 -4.7504 5.3897 14 6 4.4197 -4.9325 6.5717 15 7 5.3428 -4.2919 7.2571 16 14 4.4826 -6.7943 6.4336 17 1 5.2791 -7.1755 5.2396 18 1 3.1032 -7.3277 6.2993 19 1 5.1155 -7.3600 7.6520 20 6 2.0308 -0.7543 6.1085 21 1 1.3144 -0.8670 6.9222 22 7 3.2906 -0.1939 6.6035 23 6 4.1638 0.5498 5.8857 24 6 5.1790 0.8558 6.7269 25 7 4.8850 0.2851 7.9006 26 7 3.7598 -0.3292 7.7945 27 6 1.4438 0.1221 4.9820 28 6 2.0400 -0.7212 -1.2492 29 6 3.0742 0.0051 -2.1117 30 6 1.6357 -0.1495 -2.6095 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.1300 -0.7216 1.2491 38 1 1.6766 -1.7489 1.2493 39 1 3.7552 -1.3819 3.9723 40 1 2.5012 -2.4385 3.2538 41 1 4.0326 -2.3878 6.5592 42 1 5.3100 -3.3252 7.3291 43 1 4.0688 0.8423 4.8503 44 1 6.0561 1.4420 6.4951 45 1 0.3557 0.1301 5.0472 46 1 1.8297 1.1382 5.0638 47 1 2.1267 -1.8045 -1.1641 48 1 3.3914 0.9967 -1.7888 49 1 3.8416 -0.6002 -2.5941 50 1 1.4569 -0.8567 -3.4196 51 1 1.0065 0.7404 -2.6146 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070190171.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:47 Heat of formation + Delta-G solvation = 99.670144 kcal Electronic energy + Delta-G solvation = -32123.694388 eV Core-core repulsion = 28061.462381 eV Total energy + Delta-G solvation = -4062.232007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.33616 -41.57926 -40.02563 -38.69129 -36.34391 -35.03494 -34.47717 -33.03695 -32.04118 -31.17005 -29.09759 -28.79235 -28.24434 -25.86495 -25.25019 -24.13179 -23.73892 -23.08742 -23.01205 -21.61077 -20.45277 -19.66266 -19.24766 -18.71925 -18.35744 -17.55411 -16.91838 -16.74472 -16.56347 -16.09464 -16.02972 -15.82558 -15.46482 -15.34733 -14.89474 -14.82452 -14.64242 -14.53440 -14.20266 -14.01736 -13.63493 -13.24167 -13.16823 -12.79885 -12.75305 -12.65417 -12.59426 -12.51581 -12.46329 -12.23756 -12.00673 -11.94097 -11.88880 -11.83073 -11.65380 -11.40600 -11.24881 -11.12025 -10.93579 -10.72440 -10.51892 -10.35801 -9.79912 -9.26520 -8.41733 -5.41857 0.61952 1.30438 1.57691 1.58888 1.61885 1.69035 1.79088 1.82444 2.66831 2.89330 2.96616 3.20454 3.45335 3.48296 3.59472 3.62713 3.71913 3.88370 3.96045 3.99511 4.02967 4.10452 4.12797 4.21186 4.26212 4.28905 4.35378 4.43754 4.50569 4.58297 4.63252 4.69948 4.78219 4.82293 4.84012 4.90156 4.90824 5.01463 5.05299 5.12959 5.16050 5.20070 5.22203 5.32810 5.41616 5.54265 5.55007 5.58535 5.63349 6.37748 6.41859 6.96611 7.11253 7.52169 7.86616 7.97080 9.07203 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009879 B = 0.003399 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.553570 B = 8236.512257 C = 9959.489379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.010 4.010 3 C -0.151 4.151 4 C -0.124 4.124 5 C 0.535 3.465 6 O -0.552 6.552 7 N -0.612 5.612 8 C 0.087 3.913 9 C 0.162 3.838 10 H 0.102 0.898 11 N -0.735 5.735 12 C -0.337 4.337 13 H 0.083 0.917 14 C -0.099 4.099 15 N -0.971 5.971 16 Si 1.129 2.871 17 H -0.283 1.283 18 H -0.266 1.266 19 H -0.302 1.302 20 C 0.111 3.889 21 H 0.139 0.861 22 N -0.267 5.267 23 C -0.039 4.039 24 C -0.061 4.061 25 N -0.309 5.309 26 N -0.115 5.115 27 C 0.116 3.884 28 C -0.150 4.150 29 C -0.185 4.185 30 C -0.174 4.174 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.364 0.636 42 H 0.240 0.760 43 H 0.208 0.792 44 H 0.218 0.782 45 H 0.114 0.886 46 H 0.085 0.915 47 H 0.107 0.893 48 H 0.099 0.901 49 H 0.096 0.904 50 H 0.099 0.901 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.170 10.631 -18.525 23.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.010 4.010 3 C -0.208 4.208 4 C -0.164 4.164 5 C 0.327 3.673 6 O -0.431 6.431 7 N -0.347 5.347 8 C -0.039 4.039 9 C 0.050 3.950 10 H 0.120 0.880 11 N -0.376 5.376 12 C -0.468 4.468 13 H 0.100 0.900 14 C -0.291 4.291 15 N -0.617 5.617 16 Si 0.954 3.046 17 H -0.209 1.209 18 H -0.191 1.191 19 H -0.229 1.229 20 C 0.008 3.992 21 H 0.156 0.844 22 N -0.061 5.061 23 C -0.191 4.191 24 C -0.219 4.219 25 N -0.174 5.174 26 N -0.093 5.093 27 C -0.008 4.008 28 C -0.168 4.168 29 C -0.221 4.221 30 C -0.211 4.211 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.122 0.878 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.198 0.802 42 H 0.051 0.949 43 H 0.224 0.776 44 H 0.234 0.766 45 H 0.132 0.868 46 H 0.103 0.897 47 H 0.125 0.875 48 H 0.118 0.882 49 H 0.115 0.885 50 H 0.118 0.882 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.142 9.066 -16.907 21.251 hybrid contribution -0.101 1.836 -0.918 2.056 sum -9.243 10.902 -17.825 22.848 Atomic orbital electron populations 1.22010 0.94273 1.01516 1.02527 1.19701 0.95595 0.94624 0.91111 1.22152 1.00422 0.95653 1.02562 1.21773 1.03043 1.00759 0.90789 1.20690 0.79330 0.83957 0.83368 1.90593 1.39159 1.27504 1.85845 1.48521 1.51577 1.29586 1.05011 1.23153 0.94288 0.87183 0.99322 1.21873 0.93429 0.89521 0.90197 0.88013 1.42502 1.29641 1.04155 1.61320 1.20411 1.11548 0.83979 1.30877 0.89951 1.27229 0.94126 1.10438 0.97286 1.70964 1.37355 1.08490 1.44927 0.82613 0.76457 0.69599 0.75915 1.20933 1.19118 1.22851 1.23328 0.81902 0.95171 0.98804 0.84353 1.47444 1.17623 1.32918 1.08107 1.23901 0.92436 1.01024 1.01693 1.24173 1.02602 1.05451 0.89648 1.75072 1.07061 1.10613 1.24665 1.78361 1.07903 1.20280 1.02805 1.22122 1.01669 0.96229 0.80745 1.22321 1.04397 0.99050 0.91048 1.23187 0.92663 1.02577 1.03705 1.22956 0.98047 1.03283 0.96829 0.91728 0.92629 0.93047 0.92636 0.92625 0.91708 0.88063 0.87750 0.92345 0.88906 0.80178 0.94904 0.77563 0.76565 0.86800 0.89663 0.87473 0.88231 0.88525 0.88236 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.02 71.98 0.58 -2.13 16 2 C -0.01 -0.17 0.62 -52.18 -0.03 -0.20 16 3 C -0.15 -2.74 6.77 71.98 0.49 -2.26 16 4 C -0.12 -2.18 3.76 29.85 0.11 -2.07 16 5 C 0.54 11.58 7.26 87.66 0.64 12.22 16 6 O -0.55 -14.25 11.67 -3.02 -0.04 -14.28 16 7 N -0.61 -13.15 3.33 -811.77 -2.70 -15.85 16 8 C 0.09 2.25 5.97 86.85 0.52 2.77 16 9 C 0.16 5.19 3.58 46.38 0.17 5.35 16 10 H 0.10 3.10 8.09 -2.39 -0.02 3.08 16 11 N -0.73 -33.49 5.20 -316.38 -1.65 -35.14 16 12 C -0.34 -17.33 9.96 84.03 0.84 -16.49 16 13 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 14 C -0.10 -5.52 5.50 84.86 0.47 -5.06 16 15 N -0.97 -61.04 13.70 21.65 0.30 -60.74 16 16 Si 1.13 49.92 29.92 68.60 2.05 51.97 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 20 C 0.11 3.01 3.96 46.18 0.18 3.20 16 21 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 22 N -0.27 -8.65 2.38 -321.55 -0.77 -9.42 16 23 C -0.04 -1.10 9.36 83.49 0.78 -0.32 16 24 C -0.06 -1.88 12.05 83.73 1.01 -0.87 16 25 N -0.31 -12.43 12.41 -58.25 -0.72 -13.15 16 26 N -0.11 -4.69 12.28 37.02 0.45 -4.24 16 27 C 0.12 2.42 5.92 86.73 0.51 2.93 16 28 C -0.15 -2.22 5.15 -10.80 -0.06 -2.28 16 29 C -0.18 -2.54 9.57 30.59 0.29 -2.24 16 30 C -0.17 -2.33 9.38 30.59 0.29 -2.05 16 31 H 0.06 1.47 5.51 -2.39 -0.01 1.46 16 32 H 0.05 0.95 7.29 -2.39 -0.02 0.94 16 33 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.05 0.94 6.98 -2.39 -0.02 0.92 16 35 H 0.05 0.94 7.07 -2.39 -0.02 0.92 16 36 H 0.06 1.46 5.51 -2.39 -0.01 1.45 16 37 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.10 1.66 7.85 -2.38 -0.02 1.64 16 39 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 40 H 0.09 2.26 7.48 -2.39 -0.02 2.24 16 41 H 0.36 18.47 4.83 -92.70 -0.45 18.02 16 42 H 0.24 15.58 6.77 -92.71 -0.63 14.95 16 43 H 0.21 4.45 7.72 -2.91 -0.02 4.43 16 44 H 0.22 4.83 8.06 -2.91 -0.02 4.80 16 45 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 46 H 0.09 1.74 7.19 -2.39 -0.02 1.73 16 47 H 0.11 1.52 8.11 -2.38 -0.02 1.50 16 48 H 0.10 1.39 5.85 -2.39 -0.01 1.37 16 49 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.10 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.09 1.26 7.07 -2.39 -0.02 1.24 16 Total: -1.00 -72.22 394.69 4.35 -67.86 By element: Atomic # 1 Polarization: 41.83 SS G_CDS: 0.64 Total: 42.47 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 6.78 Total: -9.49 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -5.08 Total: -138.53 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.04 Total: -14.28 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -72.22 4.35 -67.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070190171.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.534 kcal (2) G-P(sol) polarization free energy of solvation -72.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds