Wall clock time and date at job start Wed Apr 1 2020 05:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.53004 * 109.47071 * 120.00106 * 2 1 3 5 5 C 1.52999 * 109.47088 * 175.00613 * 4 2 1 6 6 N 1.46497 * 109.47278 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.60218 * 125.33194 * 6 5 4 8 8 C 1.36591 * 106.84203 * 180.14746 * 7 6 5 9 9 C 1.47521 * 125.77030 * 179.84001 * 8 7 6 10 10 O 1.21600 * 120.00297 * 359.72069 * 9 8 7 11 11 N 1.34778 * 120.00267 * 179.97438 * 9 8 7 12 12 C 1.47287 * 136.54240 * 359.35348 * 11 9 8 13 13 C 1.54346 * 87.50738 * 151.47299 * 12 11 9 14 14 H 1.09000 * 115.79225 * 141.80361 * 13 12 11 15 15 C 1.53071 * 111.57534 * 274.17093 * 13 12 11 16 16 C 1.53143 * 109.21397 * 142.37662 * 15 13 12 17 17 N 1.46540 * 108.25576 * 301.59388 * 16 15 13 18 18 C 1.36938 * 119.73869 * 236.39916 * 17 16 15 19 19 H 1.08001 * 119.99955 * 152.10899 * 18 17 16 20 20 C 1.38812 * 119.99922 * 332.11413 * 18 17 16 21 21 N 1.31619 * 119.99723 * 160.47152 * 20 18 17 22 22 Si 1.86798 * 119.99839 * 340.46464 * 20 18 17 23 23 H 1.48506 * 109.47020 * 95.15515 * 22 20 18 24 24 H 1.48500 * 109.47376 * 215.14965 * 22 20 18 25 25 H 1.48495 * 109.47586 * 335.15410 * 22 20 18 26 26 C 1.45704 * 120.52207 * 56.41548 * 17 16 15 27 27 C 1.46463 * 136.54785 * 179.72176 * 11 9 8 28 28 H 1.09004 * 111.44109 * 97.06495 * 27 11 9 29 29 N 1.34399 * 108.45813 * 359.58194 * 8 7 6 30 30 N 1.28758 * 109.52334 * 0.25752 * 29 8 7 31 31 H 1.08995 * 109.47341 * 299.99438 * 1 2 3 32 32 H 1.09002 * 109.47071 * 60.00448 * 1 2 3 33 33 H 1.09008 * 109.46631 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47294 * 239.99947 * 2 1 3 35 35 H 1.08996 * 109.47063 * 300.00367 * 3 2 1 36 36 H 1.09004 * 109.47081 * 59.99817 * 3 2 1 37 37 H 1.09000 * 109.47142 * 179.97438 * 3 2 1 38 38 H 1.08998 * 109.47196 * 54.99817 * 4 2 1 39 39 H 1.09001 * 109.46662 * 294.99889 * 4 2 1 40 40 H 1.08998 * 109.47752 * 59.99544 * 5 4 2 41 41 H 1.09007 * 109.46509 * 299.99519 * 5 4 2 42 42 H 1.08007 * 126.57488 * 359.97438 * 7 6 5 43 43 H 1.08998 * 113.52892 * 266.10584 * 12 11 9 44 44 H 1.09009 * 113.52981 * 36.72862 * 12 11 9 45 45 H 1.08996 * 109.51496 * 22.45451 * 15 13 12 46 46 H 1.09000 * 109.55330 * 262.32192 * 15 13 12 47 47 H 1.09001 * 109.71125 * 181.90059 * 16 15 13 48 48 H 1.09004 * 109.74483 * 61.29971 * 16 15 13 49 49 H 0.97001 * 119.99401 * 179.97438 * 21 20 18 50 50 H 1.08995 * 108.78552 * 199.11299 * 26 17 16 51 51 H 1.09002 * 108.78342 * 80.90040 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8309 1.1881 6 7 4.0531 -1.5221 2.3839 7 6 4.8364 -2.6189 2.4149 8 6 5.0423 -2.9211 3.7309 9 6 5.8415 -4.0511 4.2414 10 8 6.3823 -4.8137 3.4637 11 7 5.9683 -4.2413 5.5696 12 6 5.4994 -3.5720 6.7950 13 6 5.5561 -4.9498 7.4885 14 1 5.9041 -4.9469 8.5214 15 6 4.2641 -5.7420 7.2730 16 6 4.6062 -7.2229 7.0859 17 7 5.5087 -7.3441 5.9378 18 6 5.1686 -8.1564 4.8891 19 1 5.5358 -7.9396 3.8969 20 6 4.3517 -9.2585 5.1015 21 7 3.7139 -9.8094 4.0905 22 14 4.1579 -9.9596 6.8220 23 1 2.9436 -9.3863 7.4563 24 1 4.0243 -11.4365 6.7426 25 1 5.3513 -9.6135 7.6350 26 6 6.7653 -6.6073 5.9033 27 6 6.6398 -5.2030 6.4467 28 1 7.6029 -4.8247 6.7896 29 7 4.3982 -2.0117 4.4822 30 7 3.8006 -1.1664 3.7164 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6054 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1369 40 1 3.9995 0.1676 1.1421 41 1 3.8532 -1.3939 0.3003 42 1 5.2243 -3.1570 1.5625 43 1 6.2123 -2.8526 7.1979 44 1 4.4911 -3.1665 6.7108 45 1 3.7536 -5.3711 6.3843 46 1 3.6154 -5.6250 8.1411 47 1 3.6945 -7.7900 6.8982 48 1 5.0978 -7.6033 7.9814 49 1 3.1434 -10.5797 4.2389 50 1 7.1131 -6.5548 4.8716 51 1 7.5052 -7.1476 6.4938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084657874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:44 Heat of formation + Delta-G solvation = 125.769946 kcal Electronic energy + Delta-G solvation = -31348.029382 eV Core-core repulsion = 27286.929147 eV Total energy + Delta-G solvation = -4061.100235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.17039 -40.54542 -37.80653 -37.46769 -35.50255 -34.40451 -31.86167 -31.07169 -31.01595 -30.01049 -28.72116 -27.63740 -27.09442 -24.89946 -24.00014 -23.50589 -22.65131 -21.87738 -21.08560 -20.56547 -20.01317 -18.26534 -17.33956 -16.66361 -16.47941 -16.00093 -15.81230 -15.50580 -15.24897 -15.11347 -14.71313 -14.47237 -14.25586 -13.72713 -13.67964 -13.51022 -13.32776 -13.21224 -12.77437 -12.71547 -12.52552 -12.35267 -12.21791 -12.10972 -11.91818 -11.77458 -11.53758 -11.37830 -11.23681 -11.19636 -11.07370 -10.95162 -10.82063 -10.62159 -10.32176 -10.14506 -9.83553 -9.60845 -9.33016 -9.27882 -9.21083 -8.57537 -8.20165 -6.82691 -5.80896 -3.16557 1.15604 1.88810 1.94438 3.14521 3.38928 3.55288 3.58352 3.65119 3.99076 4.22391 4.27227 4.41719 4.47729 4.59958 4.63419 4.68423 4.73592 4.85162 4.98052 5.05677 5.13890 5.17382 5.18238 5.20862 5.35439 5.36541 5.41882 5.49016 5.51255 5.54142 5.61047 5.64857 5.73661 5.75285 5.83149 5.86500 5.90221 5.93577 6.08072 6.16449 6.30612 6.31376 6.41336 6.46625 6.68383 6.73694 6.88221 7.04527 7.95065 8.13083 8.16859 8.50299 8.58358 9.12233 9.87144 10.20330 11.35468 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013284 B = 0.002745 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.364369 B =10197.200568 C =11192.714227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.153 4.153 4 C -0.130 4.130 5 C 0.121 3.879 6 N -0.363 5.363 7 C 0.090 3.910 8 C -0.085 4.085 9 C 0.632 3.368 10 O -0.525 6.525 11 N -0.618 5.618 12 C 0.106 3.894 13 C -0.116 4.116 14 H 0.096 0.904 15 C -0.116 4.116 16 C 0.127 3.873 17 N -0.597 5.597 18 C -0.248 4.248 19 H 0.086 0.914 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.884 3.116 23 H -0.291 1.291 24 H -0.306 1.306 25 H -0.269 1.269 26 C 0.144 3.856 27 C 0.129 3.871 28 H 0.082 0.918 29 N -0.203 5.203 30 N -0.072 5.072 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.204 0.796 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.028 0.972 49 H 0.260 0.740 50 H 0.079 0.921 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 23.394 -3.567 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.210 4.210 4 C -0.168 4.168 5 C 0.000 4.000 6 N -0.148 5.148 7 C -0.066 4.066 8 C -0.225 4.225 9 C 0.419 3.581 10 O -0.400 6.400 11 N -0.352 5.352 12 C -0.018 4.018 13 C -0.135 4.135 14 H 0.114 0.886 15 C -0.155 4.155 16 C 0.001 3.999 17 N -0.320 5.320 18 C -0.377 4.377 19 H 0.104 0.896 20 C -0.180 4.180 21 N -0.557 5.557 22 Si 0.715 3.285 23 H -0.219 1.219 24 H -0.235 1.235 25 H -0.194 1.194 26 C 0.018 3.982 27 C 0.025 3.975 28 H 0.099 0.901 29 N -0.076 5.076 30 N -0.053 5.053 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.220 0.780 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.086 0.914 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.046 0.954 49 H 0.070 0.930 50 H 0.097 0.903 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.639 23.895 -3.426 24.195 hybrid contribution 0.199 -0.988 0.091 1.012 sum -1.439 22.907 -3.334 23.193 Atomic orbital electron populations 1.21827 0.94473 1.02194 1.02055 1.21064 0.96512 0.96300 0.97326 1.21950 1.00973 0.95834 1.02282 1.21983 0.92489 1.02514 0.99844 1.22156 0.96503 0.98353 0.82976 1.50484 1.34842 1.20595 1.08878 1.23382 0.93802 0.89241 1.00188 1.21503 1.09078 1.01549 0.90347 1.16035 0.79678 0.82154 0.80201 1.90838 1.48805 1.45271 1.55117 1.49036 1.52638 1.30691 1.02863 1.23347 1.00877 0.95399 0.82134 1.22855 0.97331 0.95378 0.97919 0.88611 1.21829 0.94627 0.97880 1.01153 1.21236 0.94655 0.93606 0.90371 1.43793 1.17351 1.51060 1.19810 1.18997 1.27841 1.02769 0.88045 0.89634 1.25260 0.98818 0.97230 0.96649 1.69843 1.30617 1.24680 1.30568 0.86930 0.77816 0.77330 0.86393 1.21948 1.23466 1.19420 1.20290 0.88555 0.88232 1.01151 1.22395 0.95790 0.92257 0.87086 0.90056 1.74645 1.05378 1.01055 1.26551 1.81904 1.21180 1.19446 0.82720 0.92427 0.92379 0.92389 0.90709 0.92380 0.92279 0.92554 0.90722 0.89943 0.88394 0.87795 0.77952 0.90343 0.89660 0.91429 0.92283 0.90936 0.95427 0.93027 0.90270 0.95713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.19 37.16 0.34 -0.50 16 2 C -0.09 -0.49 2.92 -90.62 -0.26 -0.76 16 3 C -0.15 -0.72 8.95 37.16 0.33 -0.38 16 4 C -0.13 -0.91 4.89 -26.73 -0.13 -1.04 16 5 C 0.12 0.83 6.29 -4.04 -0.03 0.80 16 6 N -0.36 -4.12 3.69 -61.06 -0.23 -4.35 16 7 C 0.09 1.18 11.27 -16.84 -0.19 0.99 16 8 C -0.09 -1.40 6.97 -83.55 -0.58 -1.99 16 9 C 0.63 12.21 8.00 -12.48 -0.10 12.11 16 10 O -0.53 -11.78 16.11 5.28 0.09 -11.69 16 11 N -0.62 -10.92 3.33 -188.81 -0.63 -11.54 16 12 C 0.11 1.49 7.16 -11.42 -0.08 1.41 16 13 C -0.12 -1.74 4.57 -90.17 -0.41 -2.15 16 14 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 15 C -0.12 -2.10 5.71 -26.62 -0.15 -2.25 16 16 C 0.13 2.84 4.13 -3.95 -0.02 2.82 16 17 N -0.60 -14.89 2.79 -174.89 -0.49 -15.38 16 18 C -0.25 -7.34 9.97 -15.06 -0.15 -7.49 16 19 H 0.09 2.81 8.00 -52.49 -0.42 2.39 16 20 C 0.02 0.54 5.23 -17.43 -0.09 0.45 16 21 N -0.91 -29.18 13.97 55.49 0.78 -28.40 16 22 Si 0.88 23.07 24.33 -169.99 -4.14 18.94 16 23 H -0.29 -7.33 6.70 56.52 0.38 -6.95 16 24 H -0.31 -8.14 7.11 56.52 0.40 -7.74 16 25 H -0.27 -6.80 6.45 56.52 0.36 -6.44 16 26 C 0.14 3.09 6.15 -5.43 -0.03 3.05 16 27 C 0.13 2.19 4.03 -77.70 -0.31 1.88 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 N -0.20 -3.23 10.83 32.84 0.36 -2.87 16 30 N -0.07 -1.03 13.65 60.35 0.82 -0.20 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.23 6.56 -51.93 -0.34 -0.11 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.54 6.56 -51.93 -0.34 0.20 16 41 H 0.10 0.48 8.08 -51.92 -0.42 0.06 16 42 H 0.20 2.13 8.06 -52.48 -0.42 1.71 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.09 1.24 7.33 -51.92 -0.38 0.86 16 45 H 0.07 1.39 7.69 -51.93 -0.40 0.99 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.07 1.80 4.21 -51.93 -0.22 1.58 16 48 H 0.03 0.59 7.09 -51.93 -0.37 0.23 16 49 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 50 H 0.08 1.88 6.46 -51.93 -0.34 1.55 16 51 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 398.59 15.07 6.01 6.01 Total: -1.00 -36.75 398.59 -7.64 -44.38 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -8.34 Total: -1.84 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.87 Total: 6.96 kcal Atomic # 7 Polarization: -63.37 SS G_CDS: 0.61 Total: -62.76 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -4.14 Total: 18.94 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.75 -7.64 -44.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084657874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.152 kcal (2) G-P(sol) polarization free energy of solvation -36.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds