Wall clock time and date at job start Wed Apr 1 2020 05:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 C 1.53004 * 109.47071 * 120.00106 * 2 1 3 5 5 C 1.52999 * 109.47088 * 175.00613 * 4 2 1 6 6 N 1.46497 * 109.47278 * 180.02562 * 5 4 2 7 7 C 1.34811 * 126.60218 * 125.33194 * 6 5 4 8 8 C 1.36591 * 106.84203 * 180.14746 * 7 6 5 9 9 C 1.47521 * 125.77030 * 179.84001 * 8 7 6 10 10 O 1.21600 * 120.00297 * 359.72069 * 9 8 7 11 11 N 1.34778 * 120.00267 * 179.97438 * 9 8 7 12 12 C 1.47287 * 136.54240 * 359.35348 * 11 9 8 13 13 C 1.54346 * 87.50738 * 151.47299 * 12 11 9 14 14 H 1.09000 * 115.79225 * 141.80361 * 13 12 11 15 15 C 1.53071 * 111.57534 * 274.17093 * 13 12 11 16 16 C 1.53143 * 109.21397 * 142.37662 * 15 13 12 17 17 N 1.46540 * 108.25576 * 301.59388 * 16 15 13 18 18 C 1.36938 * 119.73869 * 236.39916 * 17 16 15 19 19 H 1.08001 * 119.99955 * 152.10899 * 18 17 16 20 20 C 1.38812 * 119.99922 * 332.11413 * 18 17 16 21 21 N 1.31619 * 119.99723 * 160.47152 * 20 18 17 22 22 Si 1.86798 * 119.99839 * 340.46464 * 20 18 17 23 23 H 1.48506 * 109.47020 * 95.15515 * 22 20 18 24 24 H 1.48500 * 109.47376 * 215.14965 * 22 20 18 25 25 H 1.48495 * 109.47586 * 335.15410 * 22 20 18 26 26 C 1.45704 * 120.52207 * 56.41548 * 17 16 15 27 27 C 1.46463 * 136.54785 * 179.72176 * 11 9 8 28 28 H 1.09004 * 111.44109 * 97.06495 * 27 11 9 29 29 N 1.34399 * 108.45813 * 359.58194 * 8 7 6 30 30 N 1.28758 * 109.52334 * 0.25752 * 29 8 7 31 31 H 1.08995 * 109.47341 * 299.99438 * 1 2 3 32 32 H 1.09002 * 109.47071 * 60.00448 * 1 2 3 33 33 H 1.09008 * 109.46631 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47294 * 239.99947 * 2 1 3 35 35 H 1.08996 * 109.47063 * 300.00367 * 3 2 1 36 36 H 1.09004 * 109.47081 * 59.99817 * 3 2 1 37 37 H 1.09000 * 109.47142 * 179.97438 * 3 2 1 38 38 H 1.08998 * 109.47196 * 54.99817 * 4 2 1 39 39 H 1.09001 * 109.46662 * 294.99889 * 4 2 1 40 40 H 1.08998 * 109.47752 * 59.99544 * 5 4 2 41 41 H 1.09007 * 109.46509 * 299.99519 * 5 4 2 42 42 H 1.08007 * 126.57488 * 359.97438 * 7 6 5 43 43 H 1.08998 * 113.52892 * 266.10584 * 12 11 9 44 44 H 1.09009 * 113.52981 * 36.72862 * 12 11 9 45 45 H 1.08996 * 109.51496 * 22.45451 * 15 13 12 46 46 H 1.09000 * 109.55330 * 262.32192 * 15 13 12 47 47 H 1.09001 * 109.71125 * 181.90059 * 16 15 13 48 48 H 1.09004 * 109.74483 * 61.29971 * 16 15 13 49 49 H 0.97001 * 119.99401 * 179.97438 * 21 20 18 50 50 H 1.08995 * 108.78552 * 199.11299 * 26 17 16 51 51 H 1.09002 * 108.78342 * 80.90040 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8309 1.1881 6 7 4.0531 -1.5221 2.3839 7 6 4.8364 -2.6189 2.4149 8 6 5.0423 -2.9211 3.7309 9 6 5.8415 -4.0511 4.2414 10 8 6.3823 -4.8137 3.4637 11 7 5.9683 -4.2413 5.5696 12 6 5.4994 -3.5720 6.7950 13 6 5.5561 -4.9498 7.4885 14 1 5.9041 -4.9469 8.5214 15 6 4.2641 -5.7420 7.2730 16 6 4.6062 -7.2229 7.0859 17 7 5.5087 -7.3441 5.9378 18 6 5.1686 -8.1564 4.8891 19 1 5.5358 -7.9396 3.8969 20 6 4.3517 -9.2585 5.1015 21 7 3.7139 -9.8094 4.0905 22 14 4.1579 -9.9596 6.8220 23 1 2.9436 -9.3863 7.4563 24 1 4.0243 -11.4365 6.7426 25 1 5.3513 -9.6135 7.6350 26 6 6.7653 -6.6073 5.9033 27 6 6.6398 -5.2030 6.4467 28 1 7.6029 -4.8247 6.7896 29 7 4.3982 -2.0117 4.4822 30 7 3.8006 -1.1664 3.7164 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.6766 1.9563 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 3.1300 1.4425 0.0005 38 1 1.6054 -1.7198 1.2952 39 1 1.7516 -0.1583 2.1369 40 1 3.9995 0.1676 1.1421 41 1 3.8532 -1.3939 0.3003 42 1 5.2243 -3.1570 1.5625 43 1 6.2123 -2.8526 7.1979 44 1 4.4911 -3.1665 6.7108 45 1 3.7536 -5.3711 6.3843 46 1 3.6154 -5.6250 8.1411 47 1 3.6945 -7.7900 6.8982 48 1 5.0978 -7.6033 7.9814 49 1 3.1434 -10.5797 4.2389 50 1 7.1131 -6.5548 4.8716 51 1 7.5052 -7.1476 6.4938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084657874.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:43 Heat of formation + Delta-G solvation = 99.500375 kcal Electronic energy + Delta-G solvation = -31349.168516 eV Core-core repulsion = 27286.929147 eV Total energy + Delta-G solvation = -4062.239369 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.25788 -41.89379 -39.18457 -38.15729 -37.31554 -35.25837 -33.92323 -32.70570 -32.23633 -31.04786 -29.94459 -28.74011 -28.04354 -25.72000 -25.42931 -25.31157 -23.97652 -22.89221 -22.62555 -21.52386 -20.85618 -19.54955 -18.97393 -18.21279 -17.45304 -17.28535 -17.20421 -16.96971 -16.75764 -16.10734 -15.78568 -15.50368 -15.32777 -15.05300 -15.02690 -14.80256 -14.66720 -14.37549 -14.06025 -13.99431 -13.97156 -13.54546 -13.35611 -13.16404 -12.87180 -12.81635 -12.69409 -12.61097 -12.57583 -12.30913 -12.12210 -12.10152 -12.04843 -11.72835 -11.56529 -11.52984 -11.35649 -11.23969 -11.17487 -10.79106 -10.71052 -10.36924 -9.57237 -8.86975 -8.14054 -5.46841 0.10601 0.64766 1.04912 1.30223 1.42294 1.53088 1.88705 2.29581 2.43228 3.06170 3.11407 3.25333 3.33741 3.41401 3.65166 3.71113 3.85944 3.89930 3.95810 3.98177 4.09144 4.21343 4.25565 4.30851 4.37004 4.42179 4.47157 4.55009 4.60687 4.64358 4.71276 4.77862 4.82069 4.85089 4.88161 4.89264 4.94975 5.02517 5.03528 5.05180 5.08511 5.22986 5.25159 5.27306 5.38258 5.43144 5.48232 5.55663 5.91706 6.14748 6.78661 6.83618 6.98229 7.19406 7.68549 8.00660 9.06883 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013284 B = 0.002745 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.364369 B =10197.200568 C =11192.714227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 C -0.152 4.152 4 C -0.125 4.125 5 C 0.111 3.889 6 N -0.346 5.346 7 C 0.099 3.901 8 C -0.116 4.116 9 C 0.620 3.380 10 O -0.577 6.577 11 N -0.629 5.629 12 C 0.116 3.884 13 C -0.101 4.101 14 H 0.147 0.853 15 C -0.110 4.110 16 C 0.119 3.881 17 N -0.610 5.610 18 C -0.241 4.241 19 H 0.028 0.972 20 C -0.045 4.045 21 N -0.966 5.966 22 Si 0.963 3.037 23 H -0.274 1.274 24 H -0.314 1.314 25 H -0.249 1.249 26 C 0.142 3.858 27 C 0.120 3.880 28 H 0.124 0.876 29 N -0.214 5.214 30 N -0.082 5.082 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.120 0.880 41 H 0.133 0.867 42 H 0.225 0.775 43 H 0.117 0.883 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.096 0.904 47 H 0.044 0.956 48 H 0.052 0.948 49 H 0.260 0.740 50 H 0.039 0.961 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 25.836 -0.926 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.106 4.106 3 C -0.209 4.209 4 C -0.163 4.163 5 C -0.008 4.008 6 N -0.131 5.131 7 C -0.059 4.059 8 C -0.255 4.255 9 C 0.409 3.591 10 O -0.456 6.456 11 N -0.362 5.362 12 C -0.006 4.006 13 C -0.120 4.120 14 H 0.164 0.836 15 C -0.149 4.149 16 C -0.005 4.005 17 N -0.334 5.334 18 C -0.371 4.371 19 H 0.046 0.954 20 C -0.239 4.239 21 N -0.613 5.613 22 Si 0.791 3.209 23 H -0.200 1.200 24 H -0.243 1.243 25 H -0.173 1.173 26 C 0.016 3.984 27 C 0.017 3.983 28 H 0.141 0.859 29 N -0.087 5.087 30 N -0.063 5.063 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.138 0.862 41 H 0.151 0.849 42 H 0.241 0.759 43 H 0.135 0.865 44 H 0.098 0.902 45 H 0.050 0.950 46 H 0.114 0.886 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.253 26.422 -0.724 26.461 hybrid contribution 0.044 -1.661 -0.893 1.886 sum -1.209 24.761 -1.617 24.843 Atomic orbital electron populations 1.21849 0.94919 1.01730 1.02283 1.21035 0.96106 0.96747 0.96703 1.21948 1.01577 0.95095 1.02329 1.21923 0.92540 1.01547 1.00308 1.22668 0.96351 0.99664 0.82122 1.50756 1.33435 1.19779 1.09099 1.23699 0.93113 0.89245 0.99828 1.21368 1.10549 1.01835 0.91763 1.16498 0.79550 0.82376 0.80696 1.90800 1.51082 1.47250 1.56506 1.49299 1.52379 1.31279 1.03250 1.23509 1.01664 0.95494 0.79897 1.22886 0.94539 0.94742 0.99840 0.83552 1.21726 0.96918 0.95050 1.01189 1.21356 0.93048 0.96392 0.89701 1.43864 1.19258 1.50946 1.19383 1.18742 1.27140 1.03773 0.87487 0.95411 1.26023 0.98765 0.97549 1.01533 1.70012 1.32227 1.25543 1.33524 0.85666 0.79056 0.75453 0.80697 1.20038 1.24302 1.17263 1.20366 0.87276 0.91106 0.99633 1.22640 0.98749 0.89407 0.87551 0.85893 1.74589 1.05728 1.01214 1.27206 1.81801 1.21159 1.19338 0.83978 0.92952 0.91425 0.93217 0.89487 0.91683 0.92930 0.91575 0.92430 0.91311 0.86165 0.84866 0.75896 0.86474 0.90248 0.94961 0.88573 0.93785 0.92977 0.93096 0.94225 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.19 71.98 0.66 -0.93 16 2 C -0.09 -0.79 2.92 -10.79 -0.03 -0.82 16 3 C -0.15 -1.12 8.95 71.98 0.64 -0.48 16 4 C -0.12 -1.64 4.89 30.60 0.15 -1.49 16 5 C 0.11 1.30 6.29 86.38 0.54 1.85 16 6 N -0.35 -7.53 3.69 -347.10 -1.28 -8.81 16 7 C 0.10 2.59 11.27 83.85 0.95 3.53 16 8 C -0.12 -3.87 6.97 40.81 0.28 -3.58 16 9 C 0.62 24.78 8.00 86.69 0.69 25.47 16 10 O -0.58 -27.68 16.11 -4.03 -0.06 -27.74 16 11 N -0.63 -21.73 3.33 -869.54 -2.89 -24.62 16 12 C 0.12 2.88 7.16 81.17 0.58 3.46 16 13 C -0.10 -2.60 4.57 -10.50 -0.05 -2.65 16 14 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 15 C -0.11 -3.68 5.71 30.67 0.17 -3.51 16 16 C 0.12 5.10 4.13 86.42 0.36 5.46 16 17 N -0.61 -30.79 2.79 -707.23 -1.97 -32.76 16 18 C -0.24 -15.08 9.97 84.03 0.84 -14.24 16 19 H 0.03 2.01 8.00 -2.91 -0.02 1.99 16 20 C -0.05 -2.83 5.23 84.86 0.44 -2.39 16 21 N -0.97 -64.87 13.97 21.65 0.30 -64.57 16 22 Si 0.96 48.49 24.33 68.60 1.67 50.16 16 23 H -0.27 -12.89 6.70 99.48 0.67 -12.22 16 24 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 25 H -0.25 -11.57 6.45 99.48 0.64 -10.93 16 26 C 0.14 6.08 6.15 85.91 0.53 6.61 16 27 C 0.12 3.80 4.03 38.68 0.16 3.96 16 28 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 29 N -0.21 -6.75 10.83 -50.00 -0.54 -7.29 16 30 N -0.08 -2.29 13.65 37.02 0.51 -1.78 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 37 H 0.07 0.36 6.56 -2.39 -0.02 0.34 16 38 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.12 0.98 6.56 -2.39 -0.02 0.96 16 41 H 0.13 0.86 8.08 -2.38 -0.02 0.84 16 42 H 0.22 4.69 8.06 -2.91 -0.02 4.66 16 43 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.12 7.33 -2.38 -0.02 2.10 16 45 H 0.03 1.30 7.69 -2.39 -0.02 1.28 16 46 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.04 2.13 4.21 -2.39 -0.01 2.12 16 48 H 0.05 2.01 7.09 -2.38 -0.02 1.99 16 49 H 0.26 16.45 8.31 -92.71 -0.77 15.67 16 50 H 0.04 2.00 6.46 -2.39 -0.02 1.98 16 51 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -88.45 398.59 3.46 -84.99 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.82 Total: 12.18 kcal Atomic # 6 Polarization: 13.33 SS G_CDS: 6.92 Total: 20.25 kcal Atomic # 7 Polarization: -133.95 SS G_CDS: -5.88 Total: -139.83 kcal Atomic # 8 Polarization: -27.68 SS G_CDS: -0.06 Total: -27.74 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.67 Total: 50.16 kcal Total: -88.45 3.46 -84.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084657874.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.487 kcal (2) G-P(sol) polarization free energy of solvation -88.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds